Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G193400 Glycine max HOM05D005512 ORTHO05D006716 9.6e-281 969.5 500 100.0
Phvul.001G188300 Phaseolus vulgaris HOM05D005512 ORTHO05D006716 6.6e-173 611.3 529 66.5
VMungo1383G0830 Vigna mungo HOM05D005512 ORTHO05D006716 1.2e-166 590.5 586 59.9
Lj1g0021236 Lotus japonicus HOM05D005512 ORTHO05D006716 7.4e-156 554.7 503 66.2
Glyma.03G193300 Glycine max HOM05D005512 ORTHO05D006716 4.9e-144 515.4 500 63.4
arahy.Tifrunner.gnm1.ann1.EPRD9B Arachis hypogaea HOM05D005512 ORTHO05D006716 7.9e-142 508.1 508 59.8
TPR.G19527 Trifolium pratense HOM05D005512 ORTHO05D006716 6.1e-134 481.9 509 58.3
arahy.Tifrunner.gnm1.ann1.S7MLB0 Arachis hypogaea HOM05D005512 ORTHO05D006716 2.2e-131 473.4 507 57.6
Medtr7g104190 Medicago truncatula HOM05D005512 ORTHO05D006716 1.5e-129 467.2 505 57.6
Lalb_Chr20g0112081 Lupinus albus HOM05D005512 ORTHO05D006716 2.7e-126 456.4 469 57.6
Psat3g034880 Pisum sativum HOM05D005512 ORTHO05D006716 1.2e-121 441.0 498 56.4
RcHm_v2.0_Chr3g0472661 Rosa chinensis HOM05D005512 ORTHO05D006716 1.1e-87 328.2 500 44.4
Prupe.7G114400 Prunus persica HOM05D005512 ORTHO05D006716 1.3e-83 314.7 509 44.8
FAN09G0635 Fragaria x ananassa HOM05D005512 ORTHO05D006716 7.0e-82 308.9 498 42.8
FAN05G0202 Fragaria x ananassa HOM05D005512 ORTHO05D006716 9.2e-82 308.5 516 43.2
FvH4_6g18250 Fragaria vesca HOM05D005512 ORTHO05D006716 1.6e-81 307.8 499 42.5
CiPaw.09G010900 Carya illinoinensis HOM05D005512 ORTHO05D006716 2.0e-81 307.4 491 45.4
FAN14G2179 Fragaria x ananassa HOM05D005512 ORTHO05D006716 6.0e-81 305.8 489 42.7
QL07p039701 Quercus lobata HOM05D005512 ORTHO05D006716 3.0e-80 303.5 532 44.7
FAN02G2015 Fragaria x ananassa HOM05D005512 ORTHO05D006716 6.6e-80 302.4 493 43.0
Dinv21230 Davidia involucrata HOM05D005512 ORTHO05D006716 5.6e-79 299.3 540 42.6
FAN05G5667 Fragaria x ananassa HOM05D005512 ORTHO05D006716 4.7e-78 296.2 547 40.6
Cfa016575 Carpinus fangiana HOM05D005512 ORTHO05D006716 6.8e-77 292.4 507 44.6
Ca_08983_v3 Cicer arietinum L. HOM05D005512 ORTHO05D006716 1.1e-74 285.0 457 45.3
CiPaw.10G007200 Carya illinoinensis HOM05D005512 ORTHO05D006716 5.4e-74 282.7 393 47.8
MD12G1022300 Malus domestica HOM05D005512 ORTHO05D006716 9.2e-74 282.0 509 42.0
Ciclev10013541m.g Citrus clementina HOM05D005512 ORTHO05D006716 9.5e-71 271.9 521 42.0
Haze_19571 Corylus avellana HOM05D005512 ORTHO05D006716 2.8e-70 270.4 511 43.2
FAN14G2174 Fragaria x ananassa HOM05D005512 ORTHO05D006716 8.1e-70 268.9 494 40.3
Dinv31662 Davidia involucrata HOM05D005512 ORTHO05D006716 4.0e-69 266.5 534 41.2
Glyma.17G197300 Glycine max HOM05D005512 ORTHO05D006716 9.9e-68 261.9 144 93.8
Sabra06G0089500 Salix brachista HOM05D005512 ORTHO05D006716 4.9e-67 259.6 519 40.7
Potri.006G114600 Populus trichocarpa HOM05D005512 ORTHO05D006716 2.4e-66 257.3 506 41.5
MD14G1019200 Malus domestica HOM05D005512 ORTHO05D006716 2.7e-65 253.8 437 42.6
CANSAT80G2511 Cannabis sativa HOM05D005512 ORTHO05D006716 6.0e-65 252.7 513 38.6
Glyma.19G084800 Glycine max HOM05D005512 ORTHO05D006716 1.0e-64 251.9 144 91.7
Thecc.05G085400 Theobroma cacao HOM05D005512 ORTHO05D006716 2.4e-61 240.7 412 40.5
TWI74G0342 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 8.9e-61 238.8 521 38.6
TWI53G0330 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 6.4e-59 232.6 509 39.7
Manes.09G059527 Manihot esculenta HOM05D005512 ORTHO05D006716 1.9e-58 231.1 494 40.7
Duzib128G1345 Durio zibethinus HOM05D005512 ORTHO05D006716 4.2e-58 229.9 368 43.5
Gohir.D04G102100 Gossypium hirsutum HOM05D005512 ORTHO05D006716 2.3e-56 224.2 489 36.4
ClCG10G019160 Citrullus lanatus HOM05D005512 ORTHO05D006716 6.6e-56 222.6 504 39.7
Gorai.009G405400 Gossypium raimondii HOM05D005512 ORTHO05D006716 8.7e-56 222.2 489 36.2
Cpa.g.sc5.51 Carica papaya HOM05D005512 ORTHO05D006716 4.3e-55 219.9 505 36.2
Sed0026834 Sechium edule HOM05D005512 ORTHO05D006716 1.1e-53 215.3 490 38.0
Gohir.A04G064600 Gossypium hirsutum HOM05D005512 ORTHO05D006716 4.0e-53 213.4 384 39.6
MELO3C009455.2 Cucumis melo HOM05D005512 ORTHO05D006716 6.9e-53 212.6 506 37.4
COL.COLO4_29783 Corchorus olitorius HOM05D005512 ORTHO05D006716 1.5e-52 211.5 512 37.1
GSVIVG01033811001 Vitis vinifera HOM05D005512 ORTHO05D006716 2.6e-52 210.7 533 37.5
Nn6g34983 Nelumbo nucifera HOM05D005512 ORTHO05D006716 4.4e-52 209.9 492 37.6
Atru.chr8.1592 Acer truncatum HOM05D005512 ORTHO05D006716 9.3e-50 202.2 354 44.9
Duzib093G0027 Durio zibethinus HOM05D005512 ORTHO05D006716 2.7e-49 200.7 415 36.1
CsaV3_3G037090 Cucumis sativus L. HOM05D005512 ORTHO05D006716 1.3e-48 198.4 499 36.1
Actinidia10388 Actinidia chinensis HOM05D005512 ORTHO05D006716 3.9e-48 196.8 501 36.3
CARHR020060 Cardamine hirsuta HOM05D005512 ORTHO05D006716 9.0e-45 185.7 480 35.4
Sp1g17370 Schrenkiella parvula HOM05D005512 ORTHO05D006716 5.8e-44 183.0 522 32.8
Thhalv10009681m.g Eutrema salsugineum HOM05D005512 ORTHO05D006716 2.2e-43 181.0 364 36.8
Hma1.2p1_0084F.1_g043460 Hydrangea macrophylla HOM05D005512 ORTHO05D006716 6.4e-43 179.5 535 33.6
THA.LOC104804992 Tarenaya hassleriana HOM05D005512 ORTHO05D006716 8.4e-43 179.1 554 32.9
BraA06t24676Z Brassica rapa HOM05D005512 ORTHO05D006716 1.1e-42 178.7 493 34.5
A06p15670 Brassica napus HOM05D005512 ORTHO05D006716 1.4e-42 178.3 493 34.7
AT1G19490 Arabidopsis thaliana HOM05D005512 ORTHO05D006716 2.4e-42 177.6 480 33.5
PGR142G2241 Punica granatum HOM05D005512 ORTHO05D006716 3.2e-42 177.2 414 34.3
AL1G32240 Arabidopsis lyrata HOM05D005512 ORTHO05D006716 1.2e-41 175.3 476 33.6
C05p17910 Brassica napus HOM05D005512 ORTHO05D006716 2.7e-41 174.1 498 34.1
Carub.0001s1906 Capsella rubella HOM05D005512 ORTHO05D006716 1.8e-40 171.4 479 33.2
Oeu056908.1 Olea europaea HOM05D005512 ORTHO05D006716 8.7e-40 169.1 477 32.1
Rhsim03G0078100 Rhododendron simsii HOM05D005512 ORTHO05D006716 8.7e-40 169.1 465 35.1
Actinidia08422 Actinidia chinensis HOM05D005512 ORTHO05D006716 1.1e-39 168.7 367 39.0
Aa31LG7G4150 Aethionema arabicum HOM05D005512 ORTHO05D006716 1.5e-39 168.3 503 34.0
Aqoxy4G02826 Aquilegia oxysepala HOM05D005512 ORTHO05D006716 4.3e-39 166.8 496 33.9
MSTRG.10360 Avicennia marina HOM05D005512 ORTHO05D006716 6.2e-38 162.9 377 35.3
Lj3A1000G63 Lonicera japonica HOM05D005512 ORTHO05D006716 3.1e-37 160.6 476 35.3
BcaB03g14441 Brassica carinata HOM05D005512 ORTHO05D006716 4.5e-36 156.8 480 33.3
ECA238G0726 Erigeron canadensis HOM05D000284 ORTHO05D001229 5.8e-36 156.4 486 33.1
PSO339G0823 Papaver somniferum HOM05D005512 ORTHO05D006716 7.6e-36 156.0 445 32.1
Nitab4.5_0000794g0130 Nicotiana tabacum HOM05D005512 ORTHO05D006716 1.0e-35 155.6 402 35.3
TAR623G0330 Trochodendron aralioides HOM05D005512 ORTHO05D006716 1.0e-35 155.6 280 44.3
Eucgr.K02060 Eucalyptus grandis HOM05D005512 ORTHO05D006716 1.7e-35 154.8 317 36.9
Peaxi162Scf00752g00310 Petunia axillaris HOM05D005512 ORTHO05D006716 6.5e-35 152.9 391 35.5
Peaxi162Scf36127g00005 Petunia axillaris HOM05D005512 ORTHO05D006716 6.5e-35 152.9 391 35.5
PSO384G3501 Papaver somniferum HOM05D005512 ORTHO05D006716 3.2e-34 150.6 524 30.2
CSS0012282 Camellia sinensis var. sinensis HOM05D005512 ORTHO05D006716 1.8e-32 144.8 426 34.5
Sopen09g004520 Solanum pennellii HOM05D005512 ORTHO05D006716 1.8e-32 144.8 374 35.8
Lsat_1_v5_gn_2_22561 Lactuca sativa HOM05D005512 ORTHO05D006716 1.5e-31 141.7 297 37.7
Cc08_g02550 Coffea canephora HOM05D005512 ORTHO05D006716 9.6e-31 139.0 420 33.8
Solyc09g009760.1 Solanum lycopersicum HOM05D005512 ORTHO05D006716 9.6e-31 139.0 375 34.1
AUR62028570 Chenopodium quinoa HOM05D005512 ORTHO05D006716 1.3e-30 138.7 402 34.6
AUR62033525 Chenopodium quinoa HOM05D005512 ORTHO05D006716 1.3e-30 138.7 400 34.8
Sc20g0006160 Simmondsia chinensis HOM05D005512 ORTHO05D006716 1.1e-29 135.6 355 33.0
Nitab4.5_0011780g0020 Nicotiana tabacum HOM05D005512 ORTHO05D006716 1.4e-29 135.2 382 32.2
CAN.G397.46 Capsicum annuum HOM05D005512 ORTHO05D006716 1.8e-29 134.8 362 34.3
Nitab4.5_0005756g0030 Nicotiana tabacum HOM05D005512 ORTHO05D006716 5.3e-29 133.3 257 38.5
MBI17_g31309_MAGBIO Magnolia biondii HOM05D005512 ORTHO05D006716 1.4e-26 125.2 392 33.2
EL10Ac7g16952 Beta vulgaris HOM05D005512 ORTHO05D006716 2.5e-26 124.4 369 32.5
HanXRQChr16g0518951 Helianthus annuus HOM05D005512 ORTHO05D006716 4.2e-26 123.6 475 29.9
Hund14853 Selenicereus undatus HOM05D005512 ORTHO05D006716 1.1e-23 115.5 355 33.5
ATR0820G165 Amborella trichopoda HOM05D005512 ORTHO05D006716 7.4e-23 112.8 334 30.8
Lj2A133G43 Lonicera japonica HOM05D005512 ORTHO05D006716 4.8e-22 110.2 467 29.6
Nn2g14077 Nelumbo nucifera HOM05D005512 ORTHO05D006716 9.0e-21 105.9 223 40.4
PGSC0003DMG400028166 Solanum tuberosum HOM05D005512 ORTHO05D006716 2.6e-20 104.4 342 29.8
CDE08G0293 Ceratophyllum demersum HOM05D005512 ORTHO05D006716 3.8e-19 100.5 242 38.0
Sopen10g032880 Solanum pennellii HOM05D005512 ORTHO05D006716 9.4e-18 95.9 196 38.8
Lsat_1_v5_gn_6_66321 Lactuca sativa HOM05D005512 ORTHO05D006716 2.1e-17 94.7 210 38.6
CDE06G1506 Ceratophyllum demersum HOM05D000077 ORTHO05D002348 1.4e-16 92.0 92 59.8
DCAR_020766 Daucus carota HOM05D005512 ORTHO05D006716 3.9e-16 90.5 299 33.8
Solyc10g083380.2 Solanum lycopersicum HOM05D005512 ORTHO05D006716 6.7e-16 89.7 174 39.7
DCAR_009151 Daucus carota HOM05D005512 ORTHO05D006716 3.3e-15 87.4 463 26.1
Zm00001eb197160 Zea mays HOM05D005512 ORTHO05D006716 3.3e-15 87.4 132 45.5
PGSC0003DMG402008883 Solanum tuberosum HOM05D005512 ORTHO05D006716 7.4e-15 86.3 332 30.4
Os11g0154900 Oryza sativa ssp. japonica HOM05D005512 ORTHO05D006716 1.7e-14 85.1 132 46.2
HPP92_009043 Vanilla planifolia HOM05D005512 ORTHO05D006716 1.7e-14 85.1 287 31.4
QL07p039646 Quercus lobata HOM05D005512 ORTHO05D006716 1.2e-12 79.0 330 28.2
Pp3c17_11650 Physcomitrium patens HOM05D005512 ORTHO05D006716 2.0e-12 78.2 276 29.7
Pp3c14_6250 Physcomitrium patens HOM05D005512 ORTHO05D006716 1.7e-11 75.1 156 38.5
Zm00001eb406920 Zea mays HOM05D005512 ORTHO05D006716 2.2e-11 74.7 138 41.3
SalBow3G2059 Salvia bowleyana HOM05D005512 ORTHO05D006716 8.5e-11 72.8 212 34.0
Eucgr.K02061 Eucalyptus grandis HOM05D005512 ORTHO05D006716 2.1e-09 68.2 169 38.5
AagrBONN_evm.TU.Sc2ySwM_117.2312 Anthoceros agrestis HOM05D005512 ORTHO05D006716 1.8e-08 65.1 80 50.0
unitig_22.g5122 Utricularia gibba HOM05D005512 ORTHO05D006716 2.3e-08 64.7 70 58.6
SMO351G0354 Selaginella moellendorffii HOM05D005512 ORTHO05D006716 8.8e-08 62.8 79 51.9
Oeu040522.1 Olea europaea HOM05D005512 ORTHO05D006716 1.5e-07 62.0 369 27.9
Atru.chr8.1591 Acer truncatum HOM05D005512 ORTHO05D006716 2.2e-06 58.2 46 67.4
Sc07g0005480 Simmondsia chinensis HOM05D005512 ORTHO05D006716 2.8e-06 57.8 76 48.7


User provided reference genes

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