Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G186500 Glycine max HOM05D007857 ORTHO05D009355 7.9e-129 463.8 232 100.0
Glyma.03G186400 Glycine max HOM05D007857 ORTHO05D009355 5.0e-107 391.3 236 86.9
Glyma.05G146200 Glycine max HOM05D007857 ORTHO05D009355 2.2e-94 349.4 229 77.7
Phvul.002G175100 Phaseolus vulgaris HOM05D007857 ORTHO05D009355 1.8e-85 319.7 226 73.9
Lj4g0021592 Lotus japonicus HOM05D007857 ORTHO05D009355 2.6e-79 299.3 240 65.4
VMungo0251G2942 Vigna mungo HOM05D007857 ORTHO05D009355 5.8e-71 271.6 227 64.8
Medtr8g080270 Medicago truncatula HOM05D007857 ORTHO05D009355 1.6e-60 236.9 236 58.1
Lalb_Chr07g0187361 Lupinus albus HOM05D007857 ORTHO05D009355 1.3e-59 233.8 227 58.6
Ca_18058_v3 Cicer arietinum L. HOM05D007857 ORTHO05D009355 1.4e-56 223.8 239 56.9
Psat7g078480 Pisum sativum HOM05D007857 ORTHO05D009355 1.5e-55 220.3 235 54.5
TPR.G17074 Trifolium pratense HOM05D007857 ORTHO05D009355 1.3e-54 217.2 268 51.5
arahy.Tifrunner.gnm1.ann1.AFM6H1 Arachis hypogaea HOM05D007857 ORTHO05D009355 9.3e-53 211.1 227 55.5
arahy.Tifrunner.gnm1.ann1.32T9N9 Arachis hypogaea HOM05D007857 ORTHO05D009355 4.6e-52 208.8 227 54.2
arahy.Tifrunner.gnm1.ann1.ZB6N55 Arachis hypogaea HOM05D007857 ORTHO05D009355 4.6e-52 208.8 227 54.2
Dinv10979 Davidia involucrata HOM05D007857 ORTHO05D009355 1.3e-43 180.6 238 45.4
QL03p054319 Quercus lobata HOM05D007857 ORTHO05D009355 2.3e-43 179.9 246 46.3
TWI75G0924 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 1.6e-41 173.7 240 41.2
Dinv14814 Davidia involucrata HOM05D007857 ORTHO05D009355 5.3e-40 168.7 159 54.1
CANSAT01G1499 Cannabis sativa HOM05D007857 ORTHO05D009355 9.0e-40 167.9 242 43.0
Hma1.2p1_1239F.1_g269420 Hydrangea macrophylla HOM05D007857 ORTHO05D009355 6.4e-38 161.8 232 40.9
Actinidia20693 Actinidia chinensis HOM05D007857 ORTHO05D009355 8.4e-38 161.4 179 48.6
Rhsim12G0103100 Rhododendron simsii HOM05D007857 ORTHO05D009355 1.4e-37 160.6 255 41.2
Ciclev10033758m.g Citrus clementina HOM05D007857 ORTHO05D009355 2.4e-37 159.8 218 40.4
Thecc.02G276200 Theobroma cacao HOM05D007857 ORTHO05D009355 7.1e-37 158.3 240 42.5
CiPaw.06G100500 Carya illinoinensis HOM05D007857 ORTHO05D009355 1.8e-35 153.7 227 38.3
CSS0005757 Camellia sinensis var. sinensis HOM05D007857 ORTHO05D009355 1.1e-34 151.0 232 38.4
Sc04g0010010 Simmondsia chinensis HOM05D007857 ORTHO05D009355 5.6e-34 148.7 219 40.6
TWI36G0032 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 1.6e-33 147.1 237 38.0
TWI36G1497 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 1.6e-33 147.1 237 38.0
COL.COLO4_20347 Corchorus olitorius HOM05D007857 ORTHO05D009355 1.8e-32 143.7 224 38.8
Potri.010G057800 Populus trichocarpa HOM05D007857 ORTHO05D009355 1.8e-32 143.7 222 38.7
RcHm_v2.0_Chr4g0430861 Rosa chinensis HOM05D007857 ORTHO05D009355 3.1e-32 142.9 237 39.2
Solyc04g045390.1 Solanum lycopersicum HOM05D007857 ORTHO05D009355 3.1e-32 142.9 156 46.2
Potri.008G177300 Populus trichocarpa HOM05D007857 ORTHO05D009355 4.0e-32 142.5 223 40.4
Sabra10G0047600 Salix brachista HOM05D007857 ORTHO05D009355 9.0e-32 141.4 222 37.8
Atru.chr11.2290 Acer truncatum HOM05D007857 ORTHO05D009355 1.5e-31 140.6 219 41.6
TAR374G0584 Trochodendron aralioides HOM05D007857 ORTHO05D009355 7.6e-31 138.3 240 38.8
MD16G1115600 Malus domestica HOM05D007857 ORTHO05D009355 1.3e-30 137.5 163 47.9
Manes.13G017400 Manihot esculenta HOM05D007857 ORTHO05D009355 1.3e-30 137.5 215 41.4
Haze_12382 Corylus avellana HOM05D007857 ORTHO05D009355 1.7e-30 137.1 159 47.8
Oeu020304.1 Olea europaea HOM05D001334 ORTHO05D001119 2.2e-30 136.7 272 34.9
Aqoxy5G03443 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 8.4e-30 134.8 223 37.2
Cfa009341 Carpinus fangiana HOM05D007857 ORTHO05D009355 8.4e-30 134.8 159 47.2
CsaV3_2G025390 Cucumis sativus L. HOM05D007857 ORTHO05D009355 8.4e-30 134.8 217 38.7
Sed0006532 Sechium edule HOM05D007857 ORTHO05D009355 7.1e-29 131.7 228 38.6
MELO3C010736.2 Cucumis melo HOM05D007857 ORTHO05D009355 2.7e-28 129.8 213 38.0
Sed0017756 Sechium edule HOM05D007857 ORTHO05D009355 2.7e-28 129.8 225 36.4
ClCG08G017230 Citrullus lanatus HOM05D007857 ORTHO05D009355 3.5e-28 129.4 215 36.7
Nn4g22377 Nelumbo nucifera HOM05D007857 ORTHO05D009355 1.8e-27 127.1 256 33.2
MD13G1115600 Malus domestica HOM05D007857 ORTHO05D009355 3.0e-27 126.3 164 43.9
DCAR_031188 Daucus carota HOM05D007857 ORTHO05D009355 6.7e-27 125.2 209 36.4
Gohir.A03G127600 Gossypium hirsutum HOM05D007857 ORTHO05D009355 6.7e-27 125.2 195 39.5
Gohir.D02G151200 Gossypium hirsutum HOM05D007857 ORTHO05D009355 1.1e-26 124.4 195 40.0
Gorai.005G169600 Gossypium raimondii HOM05D007857 ORTHO05D009355 1.5e-26 124.0 195 40.0
Prupe.1G231500 Prunus persica HOM05D007857 ORTHO05D009355 2.5e-26 123.2 193 38.3
Eucgr.H04657 Eucalyptus grandis HOM05D007857 ORTHO05D009355 3.3e-26 122.9 202 36.1
FvH4_4g24090 Fragaria vesca HOM05D007857 ORTHO05D009355 3.3e-26 122.9 255 35.7
PSO782G1056 Papaver somniferum HOM05D007857 ORTHO05D009355 1.3e-25 120.9 227 33.9
FAN07G0728 Fragaria x ananassa HOM05D007857 ORTHO05D009355 2.2e-25 120.2 160 41.9
Migut.K00709 Erythranthe guttata HOM05D007857 ORTHO05D009355 4.8e-25 119.0 161 41.0
FAN12G2990 Fragaria x ananassa HOM05D007857 ORTHO05D009355 8.2e-25 118.2 255 35.3
PSO063G0898 Papaver somniferum HOM05D007857 ORTHO05D009355 1.5e-23 114.0 229 34.1
MBI11_g31349_MAGBIO Magnolia biondii HOM05D007857 ORTHO05D009355 2.0e-23 113.6 195 37.9
TAR622G0135 Trochodendron aralioides HOM05D007857 ORTHO05D009355 5.9e-23 112.1 160 41.9
SalBow2G3021 Salvia bowleyana HOM05D007857 ORTHO05D009355 5.5e-21 105.5 179 38.0
PGSC0003DMG400017971 Solanum tuberosum HOM05D007857 ORTHO05D009355 5.5e-21 105.5 191 37.2
Sabra08G0135300 Salix brachista HOM05D007857 ORTHO05D009355 2.7e-20 103.2 161 37.3
PGR119G0189 Punica granatum HOM05D007857 ORTHO05D009355 1.0e-19 101.3 234 33.8
AT1G67540 Arabidopsis thaliana HOM05D010720 ORTHO05D009355 1.5e-18 97.4 214 32.7
Cc11_g16750 Coffea canephora HOM05D007857 ORTHO05D009355 5.7e-18 95.5 133 41.4
A07p34090 Brassica napus HOM05D010720 ORTHO05D009355 1.7e-17 94.0 156 34.6
SGA_v2.0_scaffold9G04766 Striga asiatica HOM05D007857 ORTHO05D009355 2.2e-17 93.6 219 31.1
BraA07t31035Z Brassica rapa HOM05D010720 ORTHO05D009355 3.7e-17 92.8 156 34.0
BcaB03g15187 Brassica carinata HOM05D010720 ORTHO05D009355 4.8e-17 92.4 156 34.0
C06p42700 Brassica napus HOM05D010720 ORTHO05D009355 4.8e-17 92.4 156 34.0
BolC6t39169H Brassica oleracea HOM05D010720 ORTHO05D009355 4.8e-17 92.4 156 34.0
AL2G26210 Arabidopsis lyrata HOM05D010720 ORTHO05D009355 3.1e-16 89.7 221 30.8
CARHR060110 Cardamine hirsuta HOM05D010720 ORTHO05D009355 1.5e-15 87.4 159 33.3
Nitab4.5_0004967g0040 Nicotiana tabacum HOM05D007857 ORTHO05D009355 1.5e-15 87.4 94 45.7
SHI17949 Sapria himalayana HOM05D007857 ORTHO05D009355 2.0e-15 87.0 129 37.2
Cpa.g.sc43.26 Carica papaya HOM05D007857 ORTHO05D009355 2.6e-15 86.7 148 35.8
PSO357G0688 Papaver somniferum HOM05D007857 ORTHO05D009355 1.3e-14 84.3 130 33.1
Sopen04g010360 Solanum pennellii HOM05D007857 ORTHO05D009355 2.2e-14 83.6 170 36.5
Aa31sc48G30 Aethionema arabicum HOM05D010720 ORTHO05D009355 1.4e-13 80.9 208 29.3
Carub.0002s1388 Capsella rubella HOM05D010720 ORTHO05D009355 9.4e-13 78.2 198 28.8
Aqoxy3G01489 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 1.6e-12 77.4 117 35.9
Thhalv10019017m.g Eutrema salsugineum HOM05D010720 ORTHO05D009355 1.6e-12 77.4 212 30.2
THA.LOC104807888 Tarenaya hassleriana HOM05D010720 ORTHO05D009355 7.9e-12 75.1 156 28.2
BcaC03g14845 Brassica carinata HOM05D010720 ORTHO05D009355 2.3e-11 73.6 156 29.5
BolC2t08453H Brassica oleracea HOM05D010720 ORTHO05D009355 2.3e-11 73.6 156 29.5
C02p23110 Brassica napus HOM05D010720 ORTHO05D009355 6.7e-11 72.0 156 29.5
BcaB05g24293 Brassica carinata HOM05D010720 ORTHO05D009355 1.5e-10 70.9 156 28.2
Nitab4.5_0000146g0080 Nicotiana tabacum HOM05D007857 ORTHO05D009355 2.0e-10 70.5 81 44.4
A02p14300 Brassica napus HOM05D010720 ORTHO05D009355 5.7e-10 68.9 156 28.8
BraA02t06491Z Brassica rapa HOM05D010720 ORTHO05D009355 5.7e-10 68.9 156 28.8
ATR0686G174 Amborella trichopoda HOM05D007857 ORTHO05D009355 7.7e-07 58.5 73 42.5
Lj6E824T1 Lonicera japonica HOM05D007857 ORTHO05D009355 5.0e-06 55.8 136 30.1


User provided reference genes

Program Settings