Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 1.9e-300 1035.0 507 100.0
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 8.2e-288 993.0 504 96.4
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 2.3e-282 974.9 507 94.3
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 4.7e-267 924.1 507 89.0
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 1.2e-262 909.4 507 87.6
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 2.5e-260 901.7 507 87.4
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 6.1e-259 897.1 507 86.6
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 1.2e-257 892.9 507 86.4
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 1.9e-252 875.5 458 93.7
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 7.3e-252 873.6 545 80.6
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 8.0e-251 870.2 545 80.4
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 1.5e-233 812.8 514 77.6
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.7e-232 809.3 510 77.5
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 1.7e-232 809.3 509 77.8
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 1.4e-231 806.2 509 77.0
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 9.2e-231 803.5 515 76.7
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 1.3e-229 799.7 509 76.8
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 2.3e-229 798.9 509 76.8
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 6.6e-229 797.3 509 76.6
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 1.5e-228 796.2 514 76.5
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 1.9e-228 795.8 509 77.4
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 8.1e-227 790.4 507 75.9
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 8.1e-227 790.4 509 75.8
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 2.4e-226 788.9 505 77.2
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 8.9e-226 786.9 509 75.6
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 3.4e-225 785.0 509 76.0
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 7.6e-225 783.9 509 75.6
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 6.4e-224 780.8 508 76.4
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 1.1e-223 780.0 504 76.8
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 5.4e-223 777.7 509 75.6
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.7e-221 772.7 511 75.1
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 5.1e-221 771.2 447 85.2
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.1e-221 771.2 513 75.0
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 8.7e-221 770.4 548 70.1
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 1.1e-220 770.0 510 75.1
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.6e-219 766.1 513 73.9
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.1e-219 765.8 508 74.0
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 6.2e-219 764.2 509 73.9
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.1e-218 763.5 509 73.5
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 1.4e-218 763.1 514 73.0
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 1.4e-218 763.1 514 71.8
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 4.0e-218 761.5 514 73.0
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 6.9e-218 760.8 514 72.2
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 6.9e-218 760.8 489 77.7
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 9.0e-218 760.4 509 73.7
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 7.6e-217 757.3 513 72.9
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 7.6e-217 757.3 511 73.0
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.7e-216 756.1 476 77.9
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 2.2e-216 755.7 514 73.0
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 1.1e-215 753.4 514 71.6
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 9.3e-215 750.4 511 72.2
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 1.2e-214 750.0 506 72.9
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.2e-214 750.0 514 71.2
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 3.5e-214 748.4 509 72.7
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 4.6e-214 748.0 509 71.7
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 6.0e-214 747.7 506 70.9
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 6.0e-214 747.7 509 71.7
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 7.8e-214 747.3 509 71.5
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 1.7e-213 746.1 509 72.5
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 1.7e-213 746.1 517 71.6
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 3.9e-213 745.0 517 71.4
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 5.1e-213 744.6 509 71.3
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 5.1e-213 744.6 509 72.5
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 6.6e-213 744.2 510 71.6
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 6.6e-213 744.2 511 71.0
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 2.5e-212 742.3 510 71.6
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 2.5e-212 742.3 510 71.6
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 9.6e-212 740.3 474 77.2
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 1.3e-211 740.0 511 70.6
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 1.3e-211 740.0 509 72.1
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 1.6e-211 739.6 526 70.5
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.6e-211 738.4 509 72.5
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 1.1e-210 736.9 509 71.7
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 1.1e-210 736.9 509 71.7
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 1.4e-210 736.5 509 71.7
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 1.8e-210 736.1 509 70.9
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 1.8e-210 736.1 507 71.4
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.8e-210 736.1 500 71.4
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 3.1e-210 735.3 509 71.1
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 3.1e-210 735.3 601 63.9
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 5.3e-210 734.6 513 71.2
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 6.9e-210 734.2 510 71.4
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 9.0e-210 733.8 511 70.6
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.5e-209 733.0 509 72.1
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 2.0e-209 732.6 505 71.3
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 3.4e-209 731.9 513 71.9
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.4e-209 731.9 501 72.1
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.4e-209 731.9 501 72.1
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 2.2e-208 729.2 513 70.2
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 1.4e-207 726.5 476 75.0
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 7.1e-207 724.2 513 70.8
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 4.6e-206 721.5 511 70.3
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 6.0e-206 721.1 474 74.9
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 1.1e-204 716.8 506 70.4
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.9e-204 716.1 514 70.2
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 2.5e-204 715.7 511 68.9
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 4.3e-204 714.9 483 72.5
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 1.3e-203 713.4 452 78.1
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 1.4e-202 709.9 509 70.1
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 2.6e-201 705.7 503 69.4
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.4e-200 701.0 509 69.9
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 8.4e-200 700.7 509 69.9
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 6.0e-198 694.5 567 63.7
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.1e-195 686.0 535 66.9
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 1.4e-194 683.3 588 60.9
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 6.9e-194 681.0 511 66.5
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.2e-193 680.2 500 67.0
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 7.6e-193 677.6 510 68.2
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 1.3e-192 676.8 512 67.0
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 2.9e-192 675.6 508 65.2
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 6.5e-192 674.5 507 66.5
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 6.5e-192 674.5 514 66.3
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 3.2e-191 672.2 513 66.5
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.6e-190 669.8 510 67.6
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 7.9e-190 667.5 473 70.8
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 1.0e-189 667.2 498 67.1
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 8.7e-189 664.1 528 65.2
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 3.3e-188 662.1 502 65.3
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 8.2e-187 657.5 453 70.4
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.4e-186 656.0 528 63.8
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 1.2e-185 653.7 511 65.2
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 2.5e-180 636.0 509 63.7
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 2.2e-168 596.3 404 72.3
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 1.9e-167 593.2 404 71.8
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 4.2e-159 565.5 532 54.5
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 9.4e-159 564.3 483 62.9
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 1.4e-157 560.5 336 83.3
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 2.2e-155 553.1 542 52.8
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 1.8e-154 550.1 664 48.6
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 1.1e-143 514.2 453 59.4
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 3.3e-143 512.7 417 61.6
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 4.3e-127 459.1 444 55.4
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.9e-119 433.7 297 74.1
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 3.1e-117 426.4 273 75.8
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 7.8e-113 411.8 282 74.8
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 2.1e-89 334.0 243 71.2
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 7.4e-87 325.5 237 65.4
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.2e-84 318.2 209 72.2
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 3.2e-82 310.1 255 60.0
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 1.1e-77 295.0 219 68.5
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 1.2e-73 281.6 497 38.8
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 4.6e-65 253.1 582 30.9
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 2.9e-59 233.8 393 36.4
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 2.6e-52 210.7 106 96.2
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 5.2e-48 196.4 138 68.8
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.7e-44 184.1 186 53.2
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.6e-39 167.5 127 69.3
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.0e-35 155.6 230 40.0
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 3.2e-34 150.6 114 62.3
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 5.7e-31 139.8 68 94.1
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.0e-28 131.3 242 38.0
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 5.9e-28 129.8 242 37.6
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.5e-23 115.2 63 85.7
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 3.5e-20 104.0 168 31.0
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 3.1e-16 90.9 73 61.6
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 6.4e-14 83.2 113 46.9
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 4.6e-12 77.0 61 62.3
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 2.5e-10 71.2 211 26.5
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.0e-08 63.9 36 83.3
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 2.0e-07 61.6 86 43.0
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.4e-07 60.8 36 75.0
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 4.4e-07 60.5 126 31.0
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 5.8e-07 60.1 106 34.0
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.3e-06 56.2 110 39.1


User provided reference genes

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