Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 3.8e-168 594.7 296 100.0
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 1.3e-139 500.0 293 86.7
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 3.1e-138 495.4 287 87.5
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 6.6e-128 461.1 295 80.3
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 7.3e-127 457.6 295 80.0
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 8.9e-125 450.7 286 82.2
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 9.2e-122 440.7 287 79.4
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 1.2e-121 440.3 290 76.9
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 1.9e-119 433.0 298 75.5
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 1.6e-118 429.9 292 75.0
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 2.8e-118 429.1 289 74.7
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 8.9e-117 424.1 283 75.6
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 9.5e-111 404.1 302 70.5
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 1.1e-106 390.6 308 67.2
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 5.4e-106 388.3 295 70.5
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 5.4e-106 388.3 295 67.8
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.0e-104 384.0 286 69.2
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.0e-104 384.0 286 69.2
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.3e-104 382.9 285 69.1
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 5.1e-104 381.7 305 65.9
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 1.1e-103 380.6 295 69.2
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 1.5e-103 380.2 335 62.7
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 1.5e-103 380.2 294 69.4
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.9e-103 379.8 285 68.4
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 1.9e-103 379.8 291 69.8
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 9.5e-103 377.5 313 63.6
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 9.5e-103 377.5 291 67.7
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 1.2e-102 377.1 295 67.5
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 1.4e-101 373.6 284 68.7
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 1.4e-101 373.6 289 67.5
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 1.8e-101 373.2 287 67.6
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 1.8e-101 373.2 295 66.8
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 3.1e-101 372.5 301 65.4
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 3.1e-101 372.5 289 67.1
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 4.0e-101 372.1 248 74.6
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 4.0e-101 372.1 255 72.2
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 1.5e-100 370.2 223 78.9
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 2.2e-99 366.3 300 62.7
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 2.9e-99 365.9 303 65.3
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 9.2e-98 360.9 294 65.6
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 1.2e-97 360.5 296 65.5
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 1.6e-97 360.1 310 62.3
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 2.1e-97 359.8 213 80.8
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 2.7e-97 359.4 291 64.3
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 2.7e-97 359.4 278 64.4
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 6.0e-97 358.2 251 70.9
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 7.8e-97 357.8 286 66.4
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 7.8e-97 357.8 286 66.4
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 1.0e-96 357.5 256 69.9
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 3.9e-96 355.5 288 64.6
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 3.9e-96 355.5 220 77.7
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 5.1e-96 355.1 287 65.2
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 5.1e-96 355.1 218 78.0
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 1.9e-95 353.2 241 73.0
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 2.5e-95 352.8 225 76.0
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 3.3e-95 352.4 225 76.9
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 4.3e-95 352.1 292 64.7
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 5.6e-95 351.7 305 60.0
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 7.3e-95 351.3 215 78.6
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 7.3e-95 351.3 299 63.2
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 1.2e-94 350.5 293 64.8
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 1.2e-94 350.5 307 61.2
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 1.2e-94 350.5 272 66.2
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 2.1e-94 349.7 289 64.4
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 3.6e-94 349.0 300 62.3
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 3.6e-94 349.0 300 62.3
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 4.7e-94 348.6 265 68.3
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 8.1e-94 347.8 296 61.8
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 1.4e-93 347.1 272 64.3
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 3.1e-93 345.9 271 63.8
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 5.2e-93 345.1 287 65.5
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 6.9e-93 344.7 300 60.7
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 1.5e-92 343.6 311 63.0
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 9.9e-92 340.9 243 67.5
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 2.9e-91 339.3 259 66.0
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 3.8e-91 339.0 233 68.2
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 3.8e-91 339.0 217 73.3
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 4.9e-91 338.6 316 61.4
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 1.1e-90 337.4 216 72.7
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 1.1e-90 337.4 296 62.5
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 1.1e-90 337.4 312 57.7
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 1.6e-89 333.6 268 61.6
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 1.7e-88 330.1 229 69.9
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 1.7e-88 330.1 286 64.0
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 3.0e-88 329.3 197 78.7
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 1.9e-87 326.6 211 72.5
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 4.0e-85 318.9 276 63.0
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 6.9e-85 318.2 296 59.5
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 1.3e-83 313.9 214 67.8
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 4.6e-81 305.4 229 68.1
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 6.9e-77 291.6 211 64.0
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 5.6e-71 271.9 234 59.4
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 2.8e-70 269.6 213 59.6
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 3.8e-67 259.2 213 57.3
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 2.7e-65 253.1 213 59.6
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 7.6e-60 235.0 144 85.4
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 1.1e-58 231.1 211 57.8
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 4.2e-58 229.2 205 61.5
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 3.9e-56 222.6 181 64.1
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 1.5e-55 220.7 182 62.1
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 3.3e-55 219.5 165 65.5
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 2.2e-54 216.9 191 52.4
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 6.3e-54 215.3 211 47.9
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 6.3e-54 215.3 239 46.4
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.0e-51 208.0 141 70.9
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 2.2e-51 206.8 163 65.0
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 4.5e-44 182.6 106 82.1
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 3.8e-43 179.5 154 61.0
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 1.9e-42 177.2 124 68.5
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 4.4e-39 166.0 121 64.5
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 3.6e-33 146.4 79 87.3
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 3.6e-33 146.4 79 87.3
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 1.0e-32 144.8 87 77.0
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 1.2e-17 94.7 225 27.1
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 1.0e-16 91.7 117 47.9
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 1.5e-10 71.2 56 69.6
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 7.3e-10 68.9 232 24.1
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 1.6e-09 67.8 42 69.0
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 3.0e-08 63.5 215 24.7
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 3.0e-08 63.5 212 24.1
MELO3C032679.2 Cucumis melo HOM05D006384 ORTHO05D007917 4.0e-08 63.2 70 55.7
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 8.9e-08 62.0 168 25.6
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.0e-07 60.8 220 22.3
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 2.0e-07 60.8 222 22.1
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 3.4e-07 60.1 226 21.2
Cre12.g527850 Chlamydomonas reinhardtii HOM05D006384 ORTHO05D007917 5.7e-07 59.3 226 22.6
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 7.5e-07 58.9 263 24.7
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 7.5e-07 58.9 221 22.6
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 7.5e-07 58.9 46 56.5
RcHm_v2.0_Chr4g0411411 Rosa chinensis HOM05D006384 ORTHO05D007917 9.8e-07 58.5 47 61.7
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 1.7e-06 57.8 130 24.6
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 1.7e-06 57.8 203 22.7
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 1.7e-06 57.8 168 24.4
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 2.9e-06 57.0 168 23.8
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 6.4e-06 55.8 240 22.9


User provided reference genes

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