Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 7.4e-251 870.2 466 100.0
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 1.0e-239 833.2 470 95.1
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 2.0e-224 782.3 470 87.2
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 2.6e-219 765.4 468 86.5
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 4.5e-200 701.4 462 79.0
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 2.8e-181 639.0 487 72.5
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 6.8e-180 634.4 469 68.9
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 1.0e-175 620.5 471 69.2
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 5.8e-171 604.7 468 67.9
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 5.8e-171 604.7 469 68.0
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 5.1e-167 591.7 473 64.7
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 6.6e-167 591.3 477 65.0
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 1.5e-166 590.1 476 67.4
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 3.3e-166 589.0 473 64.5
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 1.2e-165 587.0 472 65.3
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 3.6e-165 585.5 466 65.0
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 1.5e-163 580.1 490 64.5
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 4.4e-163 578.6 479 63.9
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 1.7e-162 576.6 493 65.9
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 6.4e-162 574.7 476 65.8
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 5.4e-161 571.6 463 63.9
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 5.4e-161 571.6 478 64.4
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.3e-159 567.0 459 63.8
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 1.8e-156 556.6 462 63.9
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 3.1e-156 555.8 467 66.0
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 2.6e-155 552.7 480 62.3
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 7.6e-155 551.2 462 63.2
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 1.7e-151 540.0 458 63.1
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 3.9e-151 538.9 464 62.5
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 6.6e-151 538.1 474 60.5
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 8.7e-151 537.7 484 60.7
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 1.9e-150 536.6 465 64.3
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 1.3e-149 533.9 470 61.3
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 1.6e-149 533.5 464 61.2
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.8e-149 531.9 461 62.3
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 3.1e-148 529.3 473 60.0
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 6.9e-148 528.1 464 61.0
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 3.4e-147 525.8 472 60.6
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 5.8e-147 525.0 477 58.7
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 9.9e-147 524.2 461 61.8
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 1.3e-146 523.9 468 60.0
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 2.1e-144 516.5 468 59.4
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 6.0e-144 515.0 473 59.4
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 7.9e-144 514.6 472 60.2
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 3.9e-143 512.3 473 59.2
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.1e-143 511.9 468 58.8
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 2.5e-142 509.6 468 58.5
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 7.4e-142 508.1 468 58.3
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 4.8e-141 505.4 467 57.6
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 4.8e-141 505.4 468 58.1
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 8.1e-141 504.6 468 58.5
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 4.0e-140 502.3 464 58.2
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 6.9e-140 501.5 463 58.3
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 9.0e-140 501.1 465 58.3
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 7.6e-139 498.0 467 59.5
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.0e-138 497.7 480 57.1
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.9e-137 493.4 467 55.7
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.5e-137 493.0 465 55.7
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.2e-136 490.7 468 56.2
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 4.6e-136 488.8 471 56.3
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 7.9e-136 488.0 461 56.4
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 1.0e-135 487.6 464 56.7
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 4.3e-134 482.3 466 55.8
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 9.6e-134 481.1 465 56.3
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.6e-133 480.3 468 56.8
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 2.1e-133 479.9 473 55.8
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 8.2e-133 478.0 458 55.7
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 5.3e-132 475.3 479 55.1
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 5.3e-132 475.3 482 55.8
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.3e-132 475.3 470 54.5
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 2.0e-131 473.4 482 55.0
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.0e-130 471.1 456 55.0
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 1.3e-130 470.7 482 55.4
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 6.5e-130 468.4 482 55.2
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 1.4e-129 467.2 459 54.2
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 5.5e-129 465.3 483 54.2
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 4.6e-128 462.2 462 53.7
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 2.3e-127 459.9 480 55.4
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 6.7e-127 458.4 444 55.9
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 9.7e-126 454.5 445 54.4
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 2.8e-125 453.0 445 54.2
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 1.1e-124 451.1 432 55.1
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 4.5e-123 445.7 458 56.1
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 1.6e-120 437.2 456 51.8
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 4.6e-120 435.6 481 52.4
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 4.6e-120 435.6 465 53.8
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 8.8e-119 431.4 611 43.0
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 1.5e-118 430.6 482 54.4
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 2.5e-118 429.9 469 53.1
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 2.5e-118 429.9 464 52.4
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 4.3e-118 429.1 401 58.6
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 2.2e-117 426.8 466 50.6
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 1.1e-116 424.5 337 63.5
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.1e-116 424.5 424 53.8
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 9.1e-116 421.4 515 49.7
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 1.0e-114 417.9 264 77.3
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 2.9e-114 416.4 473 52.4
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 1.9e-113 413.7 468 48.9
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.0e-111 407.9 454 47.6
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.4e-111 407.5 457 48.4
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.8e-111 407.1 457 48.4
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.7e-109 400.6 442 50.9
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 2.8e-109 399.8 253 76.3
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.7e-109 399.4 253 75.9
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.7e-109 399.4 253 75.9
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 1.4e-108 397.5 271 70.1
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 3.1e-108 396.4 465 46.7
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 1.5e-105 387.5 462 51.1
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 7.2e-105 385.2 464 47.0
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 2.1e-104 383.6 584 43.7
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.7e-104 382.5 438 46.8
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 1.4e-103 380.9 431 48.3
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 6.7e-103 378.6 478 45.4
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 9.1e-100 368.2 459 45.1
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 1.4e-95 354.4 268 66.4
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.3e-95 353.6 362 58.0
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 1.5e-94 350.9 468 44.9
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 1.8e-92 344.0 452 43.6
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 4.7e-88 329.3 451 42.4
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 3.4e-86 323.2 264 63.3
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 5.9e-83 312.4 433 42.5
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 1.5e-78 297.7 447 43.0
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 2.2e-69 267.3 452 36.7
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 1.0e-66 258.5 432 35.6
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 1.7e-61 241.1 422 34.4
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 7.8e-51 205.7 450 34.2
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 1.2e-48 198.4 117 84.6
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 2.1e-48 197.6 439 32.8
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 9.9e-46 188.7 339 40.7
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 2.2e-45 187.6 472 31.4
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 6.0e-43 179.5 345 37.4
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 6.0e-43 179.5 253 40.7
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.7e-42 177.9 218 44.0
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.5e-41 174.9 136 58.8
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 1.9e-41 174.5 231 48.1
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 6.9e-39 166.0 437 30.0
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.2e-35 155.2 106 68.9
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 8.1e-32 142.5 222 39.2
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 5.3e-31 139.8 222 39.2
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.9e-29 133.3 237 34.6
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.4e-28 131.7 176 50.0
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 1.9e-28 131.3 172 48.3
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 3.9e-26 123.6 231 39.4
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.7e-26 122.9 129 57.4
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 8.7e-26 122.5 99 60.6
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 1.8e-23 114.8 189 32.3
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 2.0e-22 111.3 150 48.0
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 7.6e-22 109.4 121 50.4
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 7.6e-22 109.4 121 50.4
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.6e-22 109.4 177 46.3
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 1.7e-21 108.2 240 31.2
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 1.1e-20 105.5 451 24.8
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 2.1e-19 101.3 440 26.4
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 1.9e-17 94.7 78 56.4
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 7.4e-17 92.8 113 41.6
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.7e-16 90.5 77 63.6
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.4e-15 87.8 77 62.3
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 1.5e-14 85.1 245 29.4
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.4e-14 84.0 76 60.5
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.5e-13 79.7 79 58.2
Psat2g063600 Pisum sativum HOM05D004355 ORTHO05D005228 1.9e-09 68.2 68 47.1
Haze_04707 Corylus avellana HOM05D006763 ORTHO05D008659 1.1e-07 62.4 102 45.1


User provided reference genes

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