Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G177833 Glycine max HOM05D003394 ORTHO05D004183 4.8e-49 197.6 104 100.0
Glyma.03G177100 Glycine max HOM05D003394 ORTHO05D004183 4.5e-23 111.3 64 93.8
SGA_v2.0_scaffold94G28659 Striga asiatica HOM05D003394 ORTHO05D004183 1.0e-22 110.2 89 69.7
SGA_v2.0_scaffold35G14175 Striga asiatica HOM05D003394 ORTHO05D004183 1.3e-22 109.8 69 87.0
MSTRG.26735 Avicennia marina HOM05D003394 ORTHO05D004183 3.8e-22 108.2 64 92.2
arahy.Tifrunner.gnm1.ann1.TFIN41 Arachis hypogaea HOM05D003394 ORTHO05D004183 4.2e-21 104.8 64 87.5
arahy.Tifrunner.gnm1.ann1.V9C9EC Arachis hypogaea HOM05D003394 ORTHO05D004183 4.2e-21 104.8 64 87.5
Glyma.10G048400 Glycine max HOM05D003394 ORTHO05D004183 7.2e-21 104.0 64 85.9
Glyma.13G136200 Glycine max HOM05D003394 ORTHO05D004183 7.2e-21 104.0 64 85.9
Hma1.2p1_0111F.1_g053750 Hydrangea macrophylla HOM05D003394 ORTHO05D004183 9.3e-21 103.6 64 85.9
Manes.08G001804 Manihot esculenta HOM05D003394 ORTHO05D004183 9.3e-21 103.6 64 87.5
Migut.L01654 Erythranthe guttata HOM05D003394 ORTHO05D004183 1.2e-20 103.2 64 87.5
Lalb_Chr21g0314591 Lupinus albus HOM05D003394 ORTHO05D004183 2.7e-20 102.1 64 82.8
Rhsim03G0141300 Rhododendron simsii HOM05D003394 ORTHO05D004183 2.7e-20 102.1 64 85.9
Manes.09G070600 Manihot esculenta HOM05D003394 ORTHO05D004183 3.5e-20 101.7 64 84.4
Lalb_Chr02g0153591 Lupinus albus HOM05D003394 ORTHO05D004183 4.6e-20 101.3 64 84.4
Cpa.g.sc2216.1 Carica papaya HOM05D003394 ORTHO05D004183 1.0e-19 100.1 64 81.2
CSS0037704 Camellia sinensis var. sinensis HOM05D003394 ORTHO05D004183 1.3e-19 99.8 64 82.8
Cc06_g03410 Coffea canephora HOM05D003394 ORTHO05D004183 1.3e-19 99.8 64 81.2
SalBow4G2948 Salvia bowleyana HOM05D003394 ORTHO05D004183 1.3e-19 99.8 69 75.4
VMungo0720G1327 Vigna mungo HOM05D003394 ORTHO05D004183 1.3e-19 99.8 64 81.2
ClCG02G013800 Citrullus lanatus HOM05D003394 ORTHO05D004183 1.8e-19 99.4 100 62.0
TAR636G1733 Trochodendron aralioides HOM05D003394 ORTHO05D004183 1.8e-19 99.4 64 82.8
CiPaw.01G277700 Carya illinoinensis HOM05D003394 ORTHO05D004183 2.3e-19 99.0 101 61.4
Ca_02310_v3 Cicer arietinum L. HOM05D003394 ORTHO05D004183 2.3e-19 99.0 64 82.8
Ciclev10012046m.g Citrus clementina HOM05D003394 ORTHO05D004183 2.3e-19 99.0 64 81.2
Haze_20669 Corylus avellana HOM05D003394 ORTHO05D004183 2.3e-19 99.0 64 82.8
GSVIVG01016357001 Vitis vinifera HOM05D003394 ORTHO05D004183 2.3e-19 99.0 72 72.2
CiPaw.02G177300 Carya illinoinensis HOM05D003394 ORTHO05D004183 3.0e-19 98.6 64 82.8
Nn2g10616 Nelumbo nucifera HOM05D003394 ORTHO05D004183 3.0e-19 98.6 64 82.8
Phvul.007G162750 Phaseolus vulgaris HOM05D003394 ORTHO05D004183 3.0e-19 98.6 64 81.2
Actinidia05277 Actinidia chinensis HOM05D003394 ORTHO05D004183 3.9e-19 98.2 64 79.7
Actinidia38239 Actinidia chinensis HOM05D003394 ORTHO05D004183 3.9e-19 98.2 64 82.8
ATR0594G173 Amborella trichopoda HOM05D003394 ORTHO05D004183 3.9e-19 98.2 64 82.8
Oeu018422.1 Olea europaea HOM05D003394 ORTHO05D004183 3.9e-19 98.2 61 83.6
Atru.chr8.2539 Acer truncatum HOM05D003394 ORTHO05D004183 5.1e-19 97.8 64 82.8
Atru.chr8.2540 Acer truncatum HOM05D003394 ORTHO05D004183 5.1e-19 97.8 64 82.8
QL08p057203 Quercus lobata HOM05D003394 ORTHO05D004183 5.1e-19 97.8 101 61.4
TPR.G35662 Trifolium pratense HOM05D003394 ORTHO05D004183 5.1e-19 97.8 64 81.2
MELO3C011721.2 Cucumis melo HOM05D003394 ORTHO05D004183 6.7e-19 97.4 103 60.2
CsaV3_5G006370 Cucumis sativus L. HOM05D003394 ORTHO05D004183 6.7e-19 97.4 103 60.2
TAR633G2643 Trochodendron aralioides HOM05D003394 ORTHO05D004183 6.7e-19 97.4 64 82.8
CDE09G0715 Ceratophyllum demersum HOM05D003394 ORTHO05D004183 8.7e-19 97.1 64 81.2
COL.COLO4_27101 Corchorus olitorius HOM05D003394 ORTHO05D004183 8.7e-19 97.1 64 81.2
Haze_16950 Corylus avellana HOM05D003394 ORTHO05D004183 8.7e-19 97.1 101 60.4
Dinv31373 Davidia involucrata HOM05D003394 ORTHO05D004183 8.7e-19 97.1 64 81.2
Prupe.6G243000 Prunus persica HOM05D003394 ORTHO05D004183 8.7e-19 97.1 64 82.8
SalBow3G4124 Salvia bowleyana HOM05D003394 ORTHO05D004183 8.7e-19 97.1 64 81.2
CDE02G0377 Ceratophyllum demersum HOM05D003394 ORTHO05D004183 1.1e-18 96.7 64 79.7
Duzib114G0225 Durio zibethinus HOM05D003394 ORTHO05D004183 1.1e-18 96.7 64 81.2
Gohir.D04G082200 Gossypium hirsutum HOM05D003394 ORTHO05D004183 1.1e-18 96.7 64 81.2
Gorai.012G092900 Gossypium raimondii HOM05D003394 ORTHO05D004183 1.1e-18 96.7 64 81.2
Potri.006G132800 Populus trichocarpa HOM05D003394 ORTHO05D004183 1.1e-18 96.7 64 81.2
Thecc.10G065500 Theobroma cacao HOM05D003394 ORTHO05D004183 1.1e-18 96.7 64 81.2
vmacro07093 Vaccinium macrocarpon HOM05D003394 ORTHO05D004183 1.1e-18 96.7 64 81.2
DCAR_009274 Daucus carota HOM05D003394 ORTHO05D004183 1.5e-18 96.3 64 78.1
Lj5g0004676 Lotus japonicus HOM05D003394 ORTHO05D004183 1.5e-18 96.3 64 81.2
QL07p045546 Quercus lobata HOM05D003394 ORTHO05D004183 1.5e-18 96.3 64 79.7
Cfa017491 Carpinus fangiana HOM05D003394 ORTHO05D004183 1.9e-18 95.9 64 81.2
Gohir.A05G343800 Gossypium hirsutum HOM05D003394 ORTHO05D004183 1.9e-18 95.9 64 81.2
Lj3C977T6 Lonicera japonica HOM05D003394 ORTHO05D004183 1.9e-18 95.9 64 79.7
MD04G1114100 Malus domestica HOM05D003394 ORTHO05D004183 1.9e-18 95.9 64 79.7
Duzib128G0237 Durio zibethinus HOM05D003394 ORTHO05D004183 2.5e-18 95.5 71 74.6
FAN03G2813 Fragaria x ananassa HOM05D003394 ORTHO05D004183 2.5e-18 95.5 101 57.4
FAN06G0926 Fragaria x ananassa HOM05D003394 ORTHO05D004183 2.5e-18 95.5 101 57.4
Potri.016G084100 Populus trichocarpa HOM05D003394 ORTHO05D004183 2.5e-18 95.5 64 78.1
THA.LOC104799363 Tarenaya hassleriana HOM05D003394 ORTHO05D004183 2.5e-18 95.5 64 78.1
MBI14_g24892_MAGBIO Magnolia biondii HOM05D003394 ORTHO05D004183 3.3e-18 95.1 64 79.7
TWI15G1024 Tripterygium wilfordii HOM05D003394 ORTHO05D004183 3.3e-18 95.1 64 82.8
Lalb_Chr06g0171311 Lupinus albus HOM05D003394 ORTHO05D004183 4.3e-18 94.7 64 81.2
FvH4_7g20460 Fragaria vesca HOM05D003394 ORTHO05D004183 5.7e-18 94.4 101 57.4
FAN10G3299 Fragaria x ananassa HOM05D003394 ORTHO05D004183 5.7e-18 94.4 101 57.4
Oeu029424.1 Olea europaea HOM05D003394 ORTHO05D004183 5.7e-18 94.4 64 78.1
Sabra08G0031900 Salix brachista HOM05D003394 ORTHO05D004183 5.7e-18 94.4 64 78.1
FAN06G2221 Fragaria x ananassa HOM05D003394 ORTHO05D004183 7.4e-18 94.0 101 56.4
Atru.chr2.559 Acer truncatum HOM05D003394 ORTHO05D004183 9.7e-18 93.6 64 79.7
CSS0040010 Camellia sinensis var. sinensis HOM05D003394 ORTHO05D004183 9.7e-18 93.6 64 78.1
FAN10G3966 Fragaria x ananassa HOM05D003394 ORTHO05D004183 9.7e-18 93.6 98 58.2
Atru.chr12.617 Acer truncatum HOM05D003394 ORTHO05D004183 1.3e-17 93.2 64 76.6
COL.COLO4_23774 Corchorus olitorius HOM05D003394 ORTHO05D004183 1.3e-17 93.2 64 76.6
FvH4_6g15130 Fragaria vesca HOM05D003394 ORTHO05D004183 1.3e-17 93.2 64 78.1
FAN01G1405 Fragaria x ananassa HOM05D003394 ORTHO05D004183 1.3e-17 93.2 101 57.4
FAN09G2519 Fragaria x ananassa HOM05D003394 ORTHO05D004183 1.3e-17 93.2 64 78.1
FAN14G5170 Fragaria x ananassa HOM05D003394 ORTHO05D004183 1.3e-17 93.2 64 78.1
Sed0009252 Sechium edule HOM05D003394 ORTHO05D004183 1.3e-17 93.2 97 60.8
Psat0ss6317g0120 Pisum sativum HOM05D003394 ORTHO05D004183 1.6e-17 92.8 64 78.1
HPP92_001029 Vanilla planifolia HOM05D003394 ORTHO05D004183 1.6e-17 92.8 64 76.6
DCAR_019147 Daucus carota HOM05D003394 ORTHO05D004183 2.2e-17 92.4 64 76.6
MD01G1113600 Malus domestica HOM05D003394 ORTHO05D004183 2.2e-17 92.4 64 76.6
MD07G1181600 Malus domestica HOM05D003394 ORTHO05D004183 2.2e-17 92.4 64 76.6
Potri.008G045600 Populus trichocarpa HOM05D003394 ORTHO05D004183 2.2e-17 92.4 64 78.1
Migut.J00405 Erythranthe guttata HOM05D003394 ORTHO05D004183 2.8e-17 92.0 64 78.1
Prupe.2G220500 Prunus persica HOM05D003394 ORTHO05D004183 2.8e-17 92.0 64 76.6
RcHm_v2.0_Chr1g0364371 Rosa chinensis HOM05D003394 ORTHO05D004183 2.8e-17 92.0 64 78.1
Sabra06G0104300 Salix brachista HOM05D003394 ORTHO05D004183 2.8e-17 92.0 64 76.6
Aqoxy4G03149 Aquilegia oxysepala HOM05D003394 ORTHO05D004183 3.7e-17 91.7 64 76.6
Gorai.002G251700 Gossypium raimondii HOM05D003394 ORTHO05D004183 3.7e-17 91.7 64 76.6
Ciclev10031903m.g Citrus clementina HOM05D003394 ORTHO05D004183 4.8e-17 91.3 100 56.0
ECA232G1617 Erigeron canadensis HOM05D003394 ORTHO05D004183 4.8e-17 91.3 64 76.6
Peaxi162Scf00005g05117 Petunia axillaris HOM05D003394 ORTHO05D004183 4.8e-17 91.3 64 75.0
PGR004G2225 Punica granatum HOM05D003394 ORTHO05D004183 4.8e-17 91.3 64 75.0
Sc01g0003650 Simmondsia chinensis HOM05D003394 ORTHO05D004183 4.8e-17 91.3 64 76.6
Gohir.A01G217900 Gossypium hirsutum HOM05D003394 ORTHO05D004183 6.3e-17 90.9 64 75.0
Lsat_1_v5_gn_9_66560 Lactuca sativa HOM05D003394 ORTHO05D004183 6.3e-17 90.9 64 75.0
Medtr1g067020 Medicago truncatula HOM05D003394 ORTHO05D004183 6.3e-17 90.9 64 76.6
Duzib128G1992 Durio zibethinus HOM05D003394 ORTHO05D004183 8.2e-17 90.5 64 73.4
HanXRQChr12g0370391 Helianthus annuus HOM05D003394 ORTHO05D004183 1.4e-16 89.7 64 73.4
Nitab4.5_0003820g0050 Nicotiana tabacum HOM05D003394 ORTHO05D004183 1.4e-16 89.7 64 73.4
Hund20140 Selenicereus undatus HOM05D003394 ORTHO05D004183 1.4e-16 89.7 64 71.9
Os01g0834700 Oryza sativa ssp. japonica HOM05D003394 ORTHO05D004183 1.8e-16 89.4 64 76.6
ECA233G1391 Erigeron canadensis HOM05D003394 ORTHO05D004183 3.1e-16 88.6 64 73.4
Nitab4.5_0016592g0010 Nicotiana tabacum HOM05D003394 ORTHO05D286500 3.1e-16 88.6 69 69.6
Dinv37240 Davidia involucrata HOM05D003394 ORTHO05D004183 4.1e-16 88.2 67 71.6
Eucgr.G02789 Eucalyptus grandis HOM05D003394 ORTHO05D004183 4.1e-16 88.2 64 70.3
Lsat_1_v5_gn_8_20961 Lactuca sativa HOM05D003394 ORTHO05D004183 4.1e-16 88.2 64 73.4
HanXRQChr08g0219711 Helianthus annuus HOM05D003394 ORTHO05D004183 5.3e-16 87.8 64 71.9
RcHm_v2.0_Chr3g0468431 Rosa chinensis HOM05D003394 ORTHO05D004183 5.3e-16 87.8 61 75.4
Thecc.05G052300 Theobroma cacao HOM05D003394 ORTHO05D004183 5.3e-16 87.8 64 71.9
Lj8A94G44 Lonicera japonica HOM05D003394 ORTHO05D004183 6.9e-16 87.4 64 73.4
CANSAT56G1215 Cannabis sativa HOM05D003394 ORTHO05D004183 9.0e-16 87.0 64 70.3
CAN.G350.44 Capsicum annuum HOM05D003394 ORTHO05D004183 9.0e-16 87.0 64 68.8
HanXRQChr15g0496801 Helianthus annuus HOM05D003394 ORTHO05D004183 9.0e-16 87.0 64 70.3
Nitab4.5_0000848g0130 Nicotiana tabacum HOM05D003394 ORTHO05D004183 9.0e-16 87.0 64 70.3
Nitab4.5_0006316g0020 Nicotiana tabacum HOM05D003394 ORTHO05D004183 9.0e-16 87.0 64 70.3
PGR142G1653 Punica granatum HOM05D003394 ORTHO05D004183 9.0e-16 87.0 64 71.9
PGSC0003DMG400027902 Solanum tuberosum HOM05D003394 ORTHO05D004183 9.0e-16 87.0 64 70.3
Solyc09g007230.3 Solanum lycopersicum HOM05D003394 ORTHO05D004183 1.2e-15 86.7 64 70.3
Sopen09g002100 Solanum pennellii HOM05D003394 ORTHO05D004183 1.2e-15 86.7 64 70.3
BcaB08g34902 Brassica carinata HOM05D003394 ORTHO05D004183 2.6e-15 85.5 64 70.3
BcaC06g36708 Brassica carinata HOM05D003394 ORTHO05D004183 2.6e-15 85.5 64 70.3
BcaNung04098 Brassica carinata HOM05D003394 ORTHO05D004183 2.6e-15 85.5 64 70.3
A07p00440 Brassica napus HOM05D003394 ORTHO05D004183 2.6e-15 85.5 64 70.3
A09p58950 Brassica napus HOM05D003394 ORTHO05D004183 2.6e-15 85.5 64 70.3
C07p00860 Brassica napus HOM05D003394 ORTHO05D004183 2.6e-15 85.5 64 70.3
C09p15140 Brassica napus HOM05D003394 ORTHO05D004183 2.6e-15 85.5 64 70.3
BolC7t40525H Brassica oleracea HOM05D003394 ORTHO05D004183 2.6e-15 85.5 64 70.3
BolC9t54420H Brassica oleracea HOM05D003394 ORTHO05D004183 2.6e-15 85.5 64 70.3
BraA07t27835Z Brassica rapa HOM05D003394 ORTHO05D004183 2.6e-15 85.5 64 70.3
BraA09t36921Z Brassica rapa HOM05D003394 ORTHO05D004183 2.6e-15 85.5 64 70.3
BraA09t41282Z Brassica rapa HOM05D003394 ORTHO05D004183 2.6e-15 85.5 64 70.3
Thhalv10002021m.g Eutrema salsugineum HOM05D003394 ORTHO05D004183 2.6e-15 85.5 64 70.3
Sp3g33510 Schrenkiella parvula HOM05D003394 ORTHO05D004183 2.6e-15 85.5 64 70.3
Zm00001eb148820 Zea mays HOM05D003394 ORTHO05D004183 2.6e-15 85.5 64 73.4
BcaC07g41222 Brassica carinata HOM05D003394 ORTHO05D004183 4.5e-15 84.7 64 70.3
BolC8t51787H Brassica oleracea HOM05D003394 ORTHO05D004183 4.5e-15 84.7 70 65.7
EL10Ac7g17330 Beta vulgaris HOM05D003394 ORTHO05D004183 5.9e-15 84.3 64 68.8
PSO339G1296 Papaver somniferum HOM05D003394 ORTHO05D004183 7.7e-15 84.0 64 71.9
PSO384G0969 Papaver somniferum HOM05D003394 ORTHO05D004183 7.7e-15 84.0 64 71.9
Aa31LG8G17270 Aethionema arabicum HOM05D003394 ORTHO05D004183 1.0e-14 83.6 64 70.3
BcaB03g16817 Brassica carinata HOM05D003394 ORTHO05D004183 1.0e-14 83.6 64 67.2
C08p42270 Brassica napus HOM05D003394 ORTHO05D004183 1.0e-14 83.6 70 64.3
AUR62040529 Chenopodium quinoa HOM05D003394 ORTHO05D004183 1.0e-14 83.6 64 68.8
A09p12770 Brassica napus HOM05D003394 ORTHO05D004183 1.7e-14 82.8 64 68.8
AUR62042915 Chenopodium quinoa HOM05D003394 ORTHO05D004183 2.9e-14 82.0 64 68.8
Eucgr.A01194 Eucalyptus grandis HOM05D003394 ORTHO05D004183 5.0e-14 81.3 64 70.3
Duzib093G0661 Durio zibethinus HOM05D003394 ORTHO05D004183 6.5e-14 80.9 72 63.9
Ah.08g211990 Amaranthus hybridus HOM05D003394 ORTHO05D004183 1.1e-13 80.1 64 67.2
AL3G47810 Arabidopsis lyrata HOM05D003394 ORTHO05D004183 1.1e-13 80.1 65 67.7
AT2G20280 Arabidopsis thaliana HOM05D003394 ORTHO05D004183 1.1e-13 80.1 65 67.7
Carub.0003s3461 Capsella rubella HOM05D003394 ORTHO05D004183 1.1e-13 80.1 65 67.7
CARHR110770 Cardamine hirsuta HOM05D003394 ORTHO05D004183 1.1e-13 80.1 65 67.7
Pp3c25_2690 Physcomitrium patens HOM05D003394 ORTHO05D004183 1.4e-13 79.7 64 65.6
SMO358G0089 Selaginella moellendorffii HOM05D003394 ORTHO05D004183 1.9e-13 79.3 64 65.6
Hma1.2p1_0348F.1_g131920 Hydrangea macrophylla HOM05D003394 ORTHO05D004183 3.2e-13 78.6 93 54.8
Mapoly0100s0024 Marchantia polymorpha HOM05D003394 ORTHO05D004183 6.1e-12 74.3 64 62.5
Pp3c6_18260 Physcomitrium patens HOM05D003394 ORTHO05D004183 6.1e-12 74.3 64 62.5
SEGI_02269 Sequoiadendron giganteum HOM05D003394 ORTHO05D004183 1.8e-11 72.8 64 62.5
AagrBONN_evm.TU.Sc2ySwM_344.1346 Anthoceros agrestis HOM05D003394 ORTHO05D004183 8.8e-11 70.5 64 59.4
Haze_20530 Corylus avellana HOM05D003394 ORTHO05D004183 4.3e-10 68.2 47 72.3
CBR_g30214 Chara braunii HOM05D003394 ORTHO05D004183 2.2e-09 65.9 64 54.7
A09p58970 Brassica napus HOM05D003394 ORTHO05D027701 4.8e-09 64.7 53 62.3
BraA09t41283Z Brassica rapa HOM05D003394 ORTHO05D027701 4.8e-09 64.7 53 62.3
MD12G1126400 Malus domestica HOM05D003394 ORTHO05D004183 8.2e-09 63.9 38 86.8
CiPaw.09G181800 Carya illinoinensis HOM05D003394 ORTHO05D004183 5.3e-08 61.2 53 67.9
unitig_8.g4664 Utricularia gibba HOM05D003394 ORTHO05D004183 9.1e-08 60.5 41 75.6
Gohir.D01G206800 Gossypium hirsutum HOM05D003394 ORTHO05D004183 1.5e-07 59.7 64 54.7
TAR636G1965 Trochodendron aralioides HOM05D003394 ORTHO05D004183 2.9e-06 55.5 46 63.0


User provided reference genes

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