Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 2.1e-253 878.6 470 100.0
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 1.8e-233 812.4 475 93.5
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 3.7e-226 788.1 471 90.4
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 3.5e-216 755.0 446 90.8
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 7.3e-190 667.5 447 80.8
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 7.3e-190 667.5 443 82.6
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 3.1e-188 662.1 441 81.6
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 5.8e-187 657.9 446 80.0
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 3.2e-185 652.1 438 81.7
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 1.1e-180 637.1 439 78.6
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 3.4e-179 632.1 441 79.8
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 4.3e-174 615.1 448 76.6
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 2.4e-172 609.4 421 78.1
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 6.4e-170 601.3 424 79.5
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 1.2e-168 597.0 421 75.8
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 4.8e-165 585.1 441 75.1
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 4.0e-164 582.0 447 71.6
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 1.7e-154 550.1 436 69.3
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 6.1e-152 541.6 451 67.0
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 7.4e-150 534.6 436 67.9
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 9.7e-150 534.3 436 67.9
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 4.1e-148 528.9 437 66.1
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 2.0e-147 526.6 430 66.5
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 7.7e-147 524.6 442 65.6
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 2.2e-146 523.1 429 65.7
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.4e-145 520.4 434 65.4
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 1.9e-145 520.0 443 63.9
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 9.4e-145 517.7 442 64.3
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.6e-144 516.9 438 66.0
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 2.1e-144 516.5 437 64.8
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 3.9e-143 512.3 447 63.1
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 6.7e-143 511.5 429 64.6
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 2.0e-142 510.0 439 62.4
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 2.0e-142 510.0 436 64.7
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 2.0e-142 510.0 437 64.8
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.8e-141 505.4 434 64.1
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 6.3e-141 505.0 437 63.4
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 1.1e-140 504.2 430 64.9
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.8e-140 503.4 450 63.8
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 1.8e-140 503.4 438 63.0
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.5e-139 500.4 433 63.7
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 2.6e-139 499.6 432 62.5
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 2.6e-139 499.6 430 63.5
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 5.9e-139 498.4 429 63.2
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 5.9e-139 498.4 430 64.4
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 7.7e-139 498.0 444 63.7
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.3e-138 497.3 430 63.0
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 2.9e-138 496.1 431 63.8
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 2.9e-138 496.1 431 63.3
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 2.9e-138 496.1 445 62.9
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 2.9e-138 496.1 430 63.0
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 3.8e-138 495.7 431 63.8
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 5.0e-138 495.4 431 63.3
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 8.5e-138 494.6 430 63.0
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 1.1e-137 494.2 431 63.8
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 1.4e-137 493.8 428 64.0
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.4e-137 493.8 430 62.8
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 1.9e-137 493.4 432 64.1
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 2.5e-137 493.0 437 63.4
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 7.2e-137 491.5 412 64.1
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 7.2e-137 491.5 412 64.6
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 7.2e-137 491.5 434 61.5
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 3.6e-136 489.2 412 63.8
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 4.7e-136 488.8 412 63.6
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 8.0e-136 488.0 409 65.0
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.4e-135 487.3 429 62.7
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 2.3e-135 486.5 427 62.1
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 5.2e-135 485.3 430 63.3
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 6.7e-135 485.0 440 61.1
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 6.7e-135 485.0 430 62.3
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 2.6e-134 483.0 431 62.2
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 3.3e-134 482.6 439 62.0
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 7.4e-134 481.5 437 61.1
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 9.7e-134 481.1 431 63.3
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 1.3e-133 480.7 438 60.3
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 1.7e-133 480.3 433 61.2
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 2.2e-133 479.9 427 62.5
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 8.2e-133 478.0 437 61.8
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 2.4e-132 476.5 425 61.2
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 4.1e-132 475.7 432 60.9
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 4.1e-132 475.7 432 60.9
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 4.1e-132 475.7 443 62.1
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 1.2e-131 474.2 429 59.9
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.6e-131 473.8 439 60.6
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 2.0e-131 473.4 438 61.9
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 2.6e-131 473.0 430 62.1
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 3.5e-131 472.6 430 60.9
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 6.5e-130 468.4 432 60.2
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 8.5e-130 468.0 442 61.8
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.1e-129 467.6 436 58.7
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 3.2e-129 466.1 429 60.4
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 5.5e-129 465.3 463 58.3
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 7.2e-129 464.9 438 60.7
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.1e-128 463.4 440 60.0
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 3.6e-128 462.6 395 62.3
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 6.1e-128 461.8 525 53.3
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 1.0e-127 461.1 437 58.1
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 3.0e-127 459.5 436 58.3
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 1.3e-125 454.1 302 81.8
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 2.2e-125 453.4 436 58.9
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 2.8e-125 453.0 375 64.8
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 2.8e-125 453.0 436 59.2
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 8.3e-125 451.4 440 57.0
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 1.4e-124 450.7 436 58.9
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.4e-124 450.7 430 59.3
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 2.7e-123 446.4 445 56.0
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.5e-123 445.7 436 58.5
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 4.5e-123 445.7 345 70.4
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 2.5e-121 439.9 419 59.9
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 2.1e-120 436.8 434 58.3
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 2.7e-120 436.4 472 53.8
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 3.0e-119 433.0 415 59.0
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 8.8e-119 431.4 436 57.3
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 4.1e-116 422.5 440 55.2
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 1.1e-113 414.5 410 57.1
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 9.5e-113 411.4 430 55.1
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 4.7e-112 409.1 438 55.3
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.3e-109 401.0 437 54.2
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 1.1e-108 397.9 427 54.8
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.5e-105 386.7 432 55.3
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.6e-104 384.0 430 53.7
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 8.0e-96 355.1 305 62.0
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 1.1e-95 354.8 509 45.0
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 1.3e-93 347.8 320 61.9
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 4.6e-91 339.3 430 50.5
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 3.9e-90 336.3 447 47.4
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 7.3e-89 332.0 429 44.1
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 6.4e-85 318.9 381 53.0
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 1.2e-83 314.7 461 41.6
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 5.6e-81 305.8 314 54.1
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 6.6e-66 255.8 248 59.7
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 9.6e-65 251.9 177 70.1
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 1.1e-60 238.4 178 69.1
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 8.7e-58 228.8 197 64.5
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 4.3e-57 226.5 323 44.0
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.4e-55 221.5 198 57.6
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 5.3e-55 219.5 426 40.4
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 9.6e-49 198.7 179 59.2
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 2.8e-48 197.2 120 90.0
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 2.8e-48 197.2 192 58.3
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.3e-40 171.8 159 61.0
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 2.4e-39 167.5 139 59.0
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.0e-33 147.9 145 60.7
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 2.2e-32 144.4 244 41.4
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 1.7e-29 134.8 114 65.8
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 6.3e-24 116.3 94 60.6
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 1.5e-22 111.7 90 60.0
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 6.3e-16 89.7 374 27.5
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 7.0e-15 86.3 80 62.5
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 4.5e-14 83.6 112 43.8
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.2e-13 81.3 115 45.2
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 1.0e-10 72.4 447 25.7
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.8e-10 71.6 316 25.9
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 3.4e-09 67.4 285 26.3
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 4.8e-08 63.5 208 27.4
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.4e-07 62.0 201 29.4
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 7.0e-07 59.7 171 26.9
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 7.0e-07 59.7 171 26.9
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 7.0e-07 59.7 201 27.9
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 9.1e-07 59.3 202 27.2
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 1.6e-06 58.5 201 26.4
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 2.0e-06 58.2 201 26.4
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 3.5e-06 57.4 144 28.5
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.5e-06 57.4 144 28.5
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.5e-06 57.4 144 28.5
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.5e-06 57.4 147 27.2
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.5e-06 57.4 147 27.2
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 3.5e-06 57.4 201 26.9
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 4.5e-06 57.0 147 27.9
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 5.9e-06 56.6 201 27.9


User provided reference genes

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