Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 0.0e+00 1208.0 605 100.0
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 0.0e+00 1075.5 607 89.8
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 2.6e-296 1021.5 602 86.2
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 3.1e-265 918.3 611 76.8
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 9.9e-240 833.6 612 71.1
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 2.2e-239 832.4 606 71.5
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 6.4e-239 830.9 606 71.3
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 7.1e-230 800.8 619 69.5
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 3.3e-219 765.4 612 66.3
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 5.1e-212 741.5 624 65.1
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 1.4e-193 680.2 605 60.2
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 5.0e-191 671.8 603 59.5
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 3.6e-189 665.6 602 59.0
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 4.4e-187 658.7 606 58.4
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 7.5e-179 631.3 610 56.2
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 3.7e-178 629.0 524 64.3
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 3.7e-178 629.0 605 57.0
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 1.1e-174 617.5 611 54.8
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.6e-173 613.6 606 55.9
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 4.0e-172 609.0 604 55.5
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 1.5e-171 607.1 602 54.3
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 1.5e-171 607.1 622 53.2
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 5.7e-171 605.1 609 55.2
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 2.9e-170 602.8 600 54.7
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 3.5e-168 595.9 609 55.0
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 8.6e-167 591.3 681 51.7
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 1.8e-164 583.6 609 53.7
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 5.4e-161 572.0 609 53.5
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 2.7e-160 569.7 565 54.7
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 1.7e-159 567.0 608 52.6
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 3.1e-156 556.2 601 50.7
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 2.0e-155 553.5 616 51.5
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 5.8e-155 552.0 604 50.7
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 9.8e-155 551.2 606 52.3
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 2.4e-153 546.6 628 50.5
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 3.2e-153 546.2 649 49.2
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 4.6e-152 542.3 609 49.9
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 3.9e-151 539.3 318 85.5
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 1.5e-150 537.3 576 53.6
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 2.1e-149 533.5 612 49.8
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 2.1e-149 533.5 612 49.8
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 6.2e-149 531.9 612 49.7
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 4.4e-147 525.8 625 48.0
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 1.1e-145 521.2 608 49.7
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 3.2e-145 519.6 623 48.2
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 1.6e-144 517.3 614 49.3
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 2.7e-144 516.5 615 48.9
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 7.8e-144 515.0 620 47.1
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 1.9e-142 510.4 367 70.6
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 8.1e-141 505.0 623 47.5
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 1.8e-140 503.8 481 59.3
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 2.4e-140 503.4 623 47.5
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 3.1e-140 503.1 609 48.1
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 8.9e-140 501.5 623 47.4
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 2.6e-139 500.0 621 46.9
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 4.4e-139 499.2 606 48.2
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 9.9e-139 498.0 607 48.6
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 1.3e-138 497.7 608 48.8
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 7.8e-136 488.4 606 47.7
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 2.3e-135 486.9 619 46.5
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 1.6e-133 480.7 654 46.2
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 1.8e-132 477.2 643 45.1
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 9.0e-132 474.9 627 44.7
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 2.6e-131 473.4 638 45.0
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 1.4e-129 467.6 624 45.0
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 1.9e-129 467.2 624 45.5
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 2.4e-129 466.8 637 44.4
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 4.2e-129 466.1 624 44.9
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 1.2e-128 464.5 624 45.5
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 8.7e-127 458.4 622 44.5
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 3.1e-124 449.9 635 44.3
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 6.9e-124 448.7 621 44.3
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 1.2e-123 448.0 604 43.5
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 9.9e-123 444.9 710 41.4
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 3.2e-121 439.9 614 43.3
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 1.2e-112 411.4 484 49.8
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 2.0e-107 394.0 484 49.6
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 8.5e-106 388.7 394 55.8
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 3.2e-105 386.7 648 39.5
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 4.3e-102 376.3 618 40.1
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 4.8e-101 372.9 478 45.2
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 6.9e-100 369.0 395 53.9
VMungo1383G3184 Vigna mungo HOM05D006061 ORTHO05D007450 7.7e-99 365.5 231 79.2
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 3.8e-90 336.7 371 53.1
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 7.2e-89 332.4 224 75.4
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 2.1e-88 330.9 408 48.0
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 4.1e-84 316.6 278 59.7
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 3.5e-83 313.5 316 54.7
Cpa.g.sc8.208 Carica papaya HOM05D006061 ORTHO05D007450 9.4e-73 278.9 318 49.7
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 9.4e-73 278.9 277 56.0
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 5.2e-63 246.5 276 50.7
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 6.6e-58 229.6 329 42.2
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 7.5e-54 216.1 179 69.8
Pp3c7_21970 Physcomitrium patens HOM05D006061 ORTHO05D007450 2.7e-51 207.6 620 28.2
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 3.0e-50 204.1 224 50.0
Zm00001eb133830 Zea mays HOM05D006061 ORTHO05D007450 7.0e-44 183.0 268 42.2
SMO356G0042 Selaginella moellendorffii HOM05D006061 ORTHO05D007450 9.2e-44 182.6 610 28.0
unitig_8.g4624 Utricularia gibba HOM05D006061 ORTHO05D007450 1.6e-43 181.8 301 41.2
DCAR_004700 Daucus carota HOM05D000065 ORTHO05D007450 2.9e-37 161.0 399 32.3
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 1.7e-29 135.2 149 49.0
Psat0ss8385g0040 Pisum sativum HOM05D006061 ORTHO05D007450 1.2e-27 129.0 113 55.8
Psat1g093320 Pisum sativum HOM05D006061 ORTHO05D007450 2.1e-27 128.3 117 54.7
Os12g0228900 Oryza sativa ssp. japonica HOM05D006061 ORTHO05D007450 1.0e-26 125.9 251 37.5
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 3.9e-26 124.0 151 49.0
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 3.9e-26 124.0 357 29.4
HPP92_014830 Vanilla planifolia HOM05D006061 ORTHO05D007450 6.6e-26 123.2 459 26.8
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 2.5e-25 121.3 146 46.6
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 1.4e-23 115.5 118 53.4
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 4.2e-20 104.0 153 41.8
PSO675G3076 Papaver somniferum HOM05D006061 ORTHO05D007450 2.7e-19 101.3 367 28.6
Oeu039641.2 Olea europaea HOM05D006061 ORTHO05D007450 1.0e-18 99.4 161 36.6
Gohir.D10G064900 Gossypium hirsutum HOM05D006061 ORTHO05D007450 1.3e-18 99.0 114 43.9
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.7e-18 98.6 114 43.0
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 1.1e-17 95.9 101 46.5
Rhsim13G0055400 Rhododendron simsii HOM05D006061 ORTHO05D007450 9.6e-17 92.8 122 46.7
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 6.9e-15 86.7 111 43.2
SHI26843 Sapria himalayana HOM05D006061 ORTHO05D007450 8.4e-13 79.7 121 38.0
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 5.4e-12 77.0 88 47.7
PSO541G3330 Papaver somniferum HOM05D006061 ORTHO05D007450 2.5e-09 68.2 482 23.7
Psat2g031160 Pisum sativum HOM05D006061 ORTHO05D007450 3.3e-09 67.8 96 44.8
SHI26848 Sapria himalayana HOM05D006061 ORTHO05D007450 8.1e-08 63.2 77 46.8
RcHm_v2.0_Chr3g0485191 Rosa chinensis HOM05D006061 ORTHO05D007450 2.6e-06 58.2 56 51.8


User provided reference genes

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