Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G160000 Glycine max HOM05D007181 ORTHO05D008722 1.5e-105 386.3 214 100.0
Phvul.001G155300 Phaseolus vulgaris HOM05D007181 ORTHO05D008722 1.1e-79 300.4 214 78.5
VMungo1383G2224 Vigna mungo HOM05D007181 ORTHO05D008722 2.6e-78 295.8 211 76.8
TPR.G19095 Trifolium pratense HOM05D007181 ORTHO05D008722 1.4e-66 256.9 215 71.6
Lj1g0009574 Lotus japonicus HOM05D007181 ORTHO05D008722 4.0e-66 255.4 211 64.0
Medtr7g095740 Medicago truncatula HOM05D007181 ORTHO05D008722 2.2e-64 249.6 205 72.2
arahy.Tifrunner.gnm1.ann1.M9RGYA Arachis hypogaea HOM05D007181 ORTHO05D008722 6.8e-58 228.0 207 57.0
Ca_20981_v3 Cicer arietinum L. HOM05D007181 ORTHO05D008722 2.7e-54 216.1 215 64.7
Haze_04636 Corylus avellana HOM05D007181 ORTHO05D008722 3.7e-48 195.7 204 53.9
Haze_04637 Corylus avellana HOM05D000129 ORTHO05D000144 3.7e-48 195.7 197 55.8
Manes.05G082200 Manihot esculenta HOM05D007181 ORTHO05D008722 5.4e-47 191.8 200 60.5
Prupe.8G234100 Prunus persica HOM05D007181 ORTHO05D008722 4.5e-46 188.7 209 54.5
Gorai.007G100900 Gossypium raimondii HOM05D007181 ORTHO05D008722 2.9e-45 186.0 201 52.7
Duzib211G0516 Durio zibethinus HOM05D007181 ORTHO05D008722 3.8e-45 185.7 194 60.3
Gohir.D11G094500 Gossypium hirsutum HOM05D007181 ORTHO05D008722 3.8e-45 185.7 201 53.2
Psat3g061320 Pisum sativum HOM05D007181 ORTHO05D008722 1.1e-44 184.1 216 51.9
GSVIVG01003131001 Vitis vinifera HOM05D007181 ORTHO05D008722 1.9e-44 183.3 197 57.9
MD03G1257200 Malus domestica HOM05D007181 ORTHO05D008722 2.5e-44 183.0 205 56.6
Actinidia19968 Actinidia chinensis HOM05D007181 ORTHO05D008722 7.3e-44 181.4 216 45.8
Atru.chr5.1530 Acer truncatum HOM05D007181 ORTHO05D008722 9.5e-44 181.0 191 58.6
CSS0010421 Camellia sinensis var. sinensis HOM05D007181 ORTHO05D008722 9.5e-44 181.0 166 54.8
CSS0018066 Camellia sinensis var. sinensis HOM05D007181 ORTHO05D008722 2.8e-43 179.5 199 51.3
CANSAT25G0029 Cannabis sativa HOM05D007181 ORTHO05D008722 4.7e-43 178.7 205 46.3
Ciclev10022317m.g Citrus clementina HOM05D007181 ORTHO05D008722 4.7e-43 178.7 201 51.7
FvH4_2g22890 Fragaria vesca HOM05D007181 ORTHO05D008722 8.0e-43 177.9 206 51.0
Potri.002G047400 Populus trichocarpa HOM05D007181 ORTHO05D008722 8.0e-43 177.9 197 49.7
Thecc.01G270500 Theobroma cacao HOM05D007181 ORTHO05D008722 8.0e-43 177.9 194 55.2
CiPaw.08G110300 Carya illinoinensis HOM05D007181 ORTHO05D008722 1.0e-42 177.6 190 60.0
RcHm_v2.0_Chr6g0289821 Rosa chinensis HOM05D007181 ORTHO05D008722 1.0e-42 177.6 207 48.3
Dinv32881 Davidia involucrata HOM05D007181 ORTHO05D008722 1.2e-41 174.1 201 57.2
COL.COLO4_09179 Corchorus olitorius HOM05D007181 ORTHO05D008722 2.0e-41 173.3 192 58.3
Gorai.004G217700 Gossypium raimondii HOM05D007181 ORTHO05D008722 4.4e-41 172.2 194 47.9
Aa31LG10G17220 Aethionema arabicum HOM05D007181 ORTHO05D008722 7.5e-41 171.4 194 58.2
Gohir.A08G187400 Gossypium hirsutum HOM05D007181 ORTHO05D008722 9.8e-41 171.0 201 49.8
Nn8g40635 Nelumbo nucifera HOM05D007181 ORTHO05D008722 1.3e-40 170.6 201 52.7
Cpa.g.sc52.129 Carica papaya HOM05D007181 ORTHO05D008722 8.3e-40 167.9 204 56.4
Nn8g40634 Nelumbo nucifera HOM05D007181 ORTHO05D008722 1.4e-39 167.2 201 51.7
Gohir.A05G078500 Gossypium hirsutum HOM05D000144 ORTHO05D008722 4.1e-39 165.6 203 43.8
ClCG07G000510 Citrullus lanatus HOM05D007181 ORTHO05D008722 5.4e-39 165.2 193 56.5
Sed0014767 Sechium edule HOM05D007181 ORTHO05D008722 5.4e-39 165.2 192 57.3
Gohir.D08G205700 Gossypium hirsutum HOM05D007181 ORTHO05D008722 7.0e-39 164.9 167 52.7
Gohir.A11G090066 Gossypium hirsutum HOM05D007181 ORTHO05D008722 9.2e-39 164.5 167 55.1
THA.LOC104817569 Tarenaya hassleriana HOM05D007181 ORTHO05D008722 9.2e-39 164.5 196 57.1
Sabra02G0038300 Salix brachista HOM05D007181 ORTHO05D008722 1.0e-37 161.0 144 54.2
QL12p042395 Quercus lobata HOM05D007181 ORTHO05D008722 1.7e-37 160.2 192 58.3
Hma1.2p1_0760F.1_g214120 Hydrangea macrophylla HOM05D007181 ORTHO05D008722 5.0e-37 158.7 204 44.1
MD11G1277900 Malus domestica HOM05D007181 ORTHO05D008722 4.3e-36 155.6 204 50.5
PGR044G0699 Punica granatum HOM05D007181 ORTHO05D008722 2.1e-35 153.3 199 53.3
Hma1.2p1_1332F.1_g276040 Hydrangea macrophylla HOM05D007181 ORTHO05D008722 8.0e-35 151.4 203 44.8
SGA_v2.0_scaffold1G00542 Striga asiatica HOM05D007181 ORTHO05D008722 3.1e-34 149.4 167 55.7
MBI13_g01691_MAGBIO Magnolia biondii HOM05D007181 ORTHO05D008722 6.8e-34 148.3 159 50.9
CsaV3_2G013840 Cucumis sativus L. HOM05D007181 ORTHO05D008722 1.5e-33 147.1 146 65.1
HPP92_028259 Vanilla planifolia HOM05D007181 ORTHO05D008722 1.5e-33 147.1 98 65.3
Cc00_g18800 Coffea canephora HOM05D007181 ORTHO05D008722 3.4e-33 146.0 199 47.7
MELO3C001156.2 Cucumis melo HOM05D007181 ORTHO05D008722 7.5e-33 144.8 110 61.8
PSO210G2070 Papaver somniferum HOM05D007181 ORTHO05D008722 1.7e-32 143.7 189 47.6
EL10Ac5g10486 Beta vulgaris HOM05D007181 ORTHO05D008722 2.9e-32 142.9 155 46.5
Aqoxy7G04176 Aquilegia oxysepala HOM05D007181 ORTHO05D008722 4.9e-32 142.1 186 41.9
CDE06G2554 Ceratophyllum demersum HOM05D007181 ORTHO05D008722 4.9e-32 142.1 158 51.9
PGSC0003DMG400004278 Solanum tuberosum HOM05D007181 ORTHO05D008722 6.4e-32 141.7 198 40.4
PSO210G2677 Papaver somniferum HOM05D007181 ORTHO05D008722 8.3e-32 141.4 186 44.6
Oeu025775.1 Olea europaea HOM05D007181 ORTHO05D008722 1.4e-31 140.6 138 56.5
VMungo1215G0236 Vigna mungo HOM05D007181 ORTHO05D008722 1.4e-31 140.6 128 59.4
Ah.11g050140 Amaranthus hybridus HOM05D007181 ORTHO05D008722 3.2e-31 139.4 156 44.9
AUR62011964 Chenopodium quinoa HOM05D007181 ORTHO05D008722 3.2e-31 139.4 203 40.4
AUR62032277 Chenopodium quinoa HOM05D007181 ORTHO05D008722 5.4e-31 138.7 199 40.7
Nitab4.5_0003555g0080 Nicotiana tabacum HOM05D007181 ORTHO05D008722 7.0e-31 138.3 197 43.1
Sp5g00160 Schrenkiella parvula HOM05D007181 ORTHO05D008722 9.2e-31 137.9 161 52.2
BcaC07g40807 Brassica carinata HOM05D007181 ORTHO05D008722 6.0e-30 135.2 156 48.1
C08p38020 Brassica napus HOM05D007181 ORTHO05D008722 6.0e-30 135.2 156 48.1
BolC8t51376H Brassica oleracea HOM05D007181 ORTHO05D008722 6.0e-30 135.2 156 48.1
Thhalv10006272m.g Eutrema salsugineum HOM05D007181 ORTHO05D008722 7.8e-30 134.8 159 53.5
BraA09t40915Z Brassica rapa HOM05D007181 ORTHO05D008722 1.7e-29 133.7 161 46.6
SalBow4G0298 Salvia bowleyana HOM05D007181 ORTHO05D008722 1.7e-29 133.7 206 48.5
SalBow4G3342 Salvia bowleyana HOM05D007181 ORTHO05D008722 1.7e-29 133.7 206 48.5
A09p55080 Brassica napus HOM05D007181 ORTHO05D008722 2.3e-29 133.3 186 44.6
Lsat_1_v5_gn_5_185100 Lactuca sativa HOM05D007181 ORTHO05D008722 2.3e-29 133.3 197 44.7
SalBow6G6987 Salvia bowleyana HOM05D007181 ORTHO05D008722 3.0e-29 132.9 196 49.5
Solyc12g100320.2 Solanum lycopersicum HOM05D007181 ORTHO05D008722 3.0e-29 132.9 194 38.7
Peaxi162Scf00146g10111 Petunia axillaris HOM05D007181 ORTHO05D008722 3.9e-29 132.5 194 43.3
Sopen12g034950 Solanum pennellii HOM05D007181 ORTHO05D008722 3.9e-29 132.5 197 38.1
SHI10021 Sapria himalayana HOM05D007181 ORTHO05D008722 5.0e-29 132.1 196 47.4
CAN.G575.12 Capsicum annuum HOM05D007181 ORTHO05D008722 1.5e-28 130.6 196 42.3
CARHR291580 Cardamine hirsuta HOM05D007181 ORTHO05D008722 5.6e-28 128.6 188 53.2
BcaB03g13697 Brassica carinata HOM05D007181 ORTHO05D008722 1.2e-27 127.5 161 50.9
AT3G63390 Arabidopsis thaliana HOM05D007181 ORTHO05D008722 3.6e-27 125.9 179 52.0
Os11g0616200 Oryza sativa ssp. japonica HOM05D007181 ORTHO05D008722 2.3e-26 123.2 135 57.8
vmacro02617 Vaccinium macrocarpon HOM05D007181 ORTHO05D008722 3.1e-26 122.9 201 40.8
Lj2P1163T10 Lonicera japonica HOM05D007181 ORTHO05D008722 3.4e-25 119.4 174 39.1
FAN24G0107 Fragaria x ananassa HOM05D007181 ORTHO05D008722 4.4e-25 119.0 168 47.0
AL5G46250 Arabidopsis lyrata HOM05D007181 ORTHO05D008722 5.8e-25 118.6 179 44.7
SEGI_03897 Sequoiadendron giganteum HOM05D007181 ORTHO05D008722 5.8e-25 118.6 105 56.2
Sc05g0001150 Simmondsia chinensis HOM05D007181 ORTHO05D008722 4.9e-24 115.5 106 52.8
AagrBONN_evm.TU.Sc2ySwM_362.2054 Anthoceros agrestis HOM05D007181 ORTHO05D008722 9.2e-23 111.3 107 48.6
TAR624G0264 Trochodendron aralioides HOM05D007181 ORTHO05D008722 1.6e-22 110.5 210 38.6
Pp3c24_16150 Physcomitrium patens HOM05D007181 ORTHO05D008722 2.1e-22 110.2 100 48.0
Rhsim13G0029700 Rhododendron simsii HOM05D007181 ORTHO05D008722 2.7e-22 109.8 202 37.6
Carub.0005s3001 Capsella rubella HOM05D007181 ORTHO05D008722 3.5e-22 109.4 185 38.4
HanXRQChr01g0005991 Helianthus annuus HOM05D007181 ORTHO05D008722 1.7e-21 107.1 141 48.2
SMO143G0136 Selaginella moellendorffii HOM05D007181 ORTHO05D008722 3.0e-21 106.3 99 45.5
Pp3c8_19140 Physcomitrium patens HOM05D007181 ORTHO05D008722 3.3e-20 102.8 100 48.0
Zm00001eb166760 Zea mays HOM05D007181 ORTHO05D008722 1.2e-19 100.9 139 51.1
Mapoly0126s0033 Marchantia polymorpha HOM05D007181 ORTHO05D008722 2.6e-17 93.2 90 46.7
ATR0099G083 Amborella trichopoda HOM05D007181 ORTHO05D008722 6.6e-13 78.6 62 56.5
VMungo0720G2453 Vigna mungo HOM05D001407 ORTHO05D001314 2.5e-12 76.6 64 64.1
BcaC07g42693 Brassica carinata HOM05D007181 ORTHO05D008722 1.6e-11 73.9 161 33.5
SMO203G0031 Selaginella moellendorffii HOM05D007181 ORTHO05D008722 2.8e-11 73.2 60 45.0
CBR_g39816 Chara braunii HOM05D007181 ORTHO05D008722 8.9e-10 68.2 98 40.8
SMO203G0072 Selaginella moellendorffii HOM05D007181 ORTHO05D008722 3.4e-09 66.2 61 44.3
VMungo1080G0524 Vigna mungo HOM05D007188 ORTHO05D008722 4.9e-08 62.4 81 64.2


User provided reference genes

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