Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 2.0e-106 389.0 191 100.0
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 3.2e-91 338.6 192 90.1
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 8.4e-76 287.3 196 75.5
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 1.1e-75 287.0 196 75.0
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 5.6e-56 221.5 203 65.5
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 1.6e-50 203.4 205 60.0
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 1.6e-50 203.4 205 60.0
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 1.0e-49 200.7 199 60.3
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 5.1e-49 198.4 196 62.8
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 1.3e-47 193.7 198 60.1
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 1.6e-47 193.4 201 61.2
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 2.1e-47 193.0 200 60.5
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 2.8e-47 192.6 198 59.1
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 2.8e-47 192.6 196 59.7
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 3.7e-47 192.2 199 58.3
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 6.3e-47 191.4 203 60.6
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 1.5e-45 186.8 203 59.6
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 3.4e-45 185.7 212 56.1
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 5.9e-45 184.9 210 53.3
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 7.6e-45 184.5 215 54.4
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 5.0e-44 181.8 210 52.9
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 8.5e-44 181.0 210 52.9
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 2.5e-43 179.5 214 53.3
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 7.2e-43 177.9 215 50.7
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 9.3e-43 177.6 195 54.4
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 9.3e-43 177.6 212 55.2
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 1.6e-42 176.8 214 51.4
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 3.6e-42 175.6 214 50.9
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 3.6e-42 175.6 216 51.9
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 1.8e-41 173.3 208 54.3
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 3.0e-41 172.6 218 50.5
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 3.0e-41 172.6 185 58.9
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 3.9e-41 172.2 215 51.6
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 3.9e-41 172.2 216 53.2
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 8.7e-41 171.0 209 54.5
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.9e-40 169.9 196 52.6
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 2.5e-40 169.5 214 50.5
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 3.3e-40 169.1 213 51.2
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 7.4e-40 167.9 221 50.2
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 7.4e-40 167.9 194 55.7
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.6e-39 166.8 213 51.2
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 2.2e-39 166.4 222 49.5
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 2.8e-39 166.0 182 56.6
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 1.1e-38 164.1 218 50.0
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.8e-38 163.3 192 51.6
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.4e-38 162.9 213 51.2
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 3.1e-38 162.5 218 49.5
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 4.1e-38 162.2 195 51.8
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 4.1e-38 162.2 230 48.3
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 1.5e-37 160.2 225 50.2
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 3.4e-37 159.1 221 48.4
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 5.9e-37 158.3 221 48.4
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 5.9e-37 158.3 217 50.2
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 7.7e-37 157.9 221 47.1
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.0e-36 157.5 214 49.5
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 5.0e-36 155.2 204 48.5
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 6.5e-36 154.8 212 49.1
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 6.5e-36 154.8 216 49.1
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 8.5e-36 154.5 208 49.5
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 8.5e-36 154.5 223 47.5
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.1e-35 154.1 208 51.0
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 2.5e-35 152.9 223 48.0
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 3.2e-35 152.5 179 52.5
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 3.2e-35 152.5 203 51.7
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 4.2e-35 152.1 209 48.8
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 4.2e-35 152.1 226 47.8
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 1.2e-34 150.6 207 51.2
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.6e-34 150.2 208 51.0
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.6e-34 150.2 211 48.8
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 2.7e-34 149.4 203 46.8
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 4.6e-34 148.7 202 47.5
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 1.0e-33 147.5 215 46.5
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.0e-33 147.5 216 45.4
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.0e-33 147.5 213 48.8
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 1.8e-33 146.7 219 44.7
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.3e-33 146.4 208 47.1
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 2.3e-33 146.4 208 47.1
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 2.3e-33 146.4 216 44.9
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 8.8e-33 144.4 217 48.8
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.1e-32 144.1 209 46.4
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 2.0e-32 143.3 210 46.7
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 2.0e-32 143.3 210 46.2
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 2.0e-32 143.3 216 44.4
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.3e-31 140.6 210 46.7
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 2.8e-31 139.4 211 47.9
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 2.8e-31 139.4 218 45.0
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 3.7e-31 139.0 210 45.2
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 3.7e-31 139.0 211 48.3
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 4.8e-31 138.7 227 45.4
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 6.3e-31 138.3 197 49.7
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 1.4e-30 137.1 215 45.1
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.8e-30 136.7 170 50.6
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.8e-30 136.7 216 44.9
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 4.1e-30 135.6 209 44.5
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 5.3e-30 135.2 288 38.5
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 9.1e-30 134.4 212 45.3
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 9.1e-30 134.4 210 44.8
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 2.0e-29 133.3 210 45.7
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 2.2e-28 129.8 221 42.5
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 1.1e-27 127.5 211 42.2
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 1.4e-27 127.1 225 40.9
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.4e-27 127.1 204 45.1
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.9e-27 126.7 211 44.5
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 2.5e-27 126.3 159 49.1
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 2.5e-27 126.3 170 49.4
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 5.5e-27 125.2 194 46.4
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 7.2e-27 124.8 221 39.8
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 7.2e-27 124.8 204 44.1
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 9.4e-27 124.4 205 41.0
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 9.4e-27 124.4 206 39.8
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.1e-26 123.2 204 45.6
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 2.7e-26 122.9 207 45.4
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 2.7e-26 122.9 242 38.0
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 3.6e-26 122.5 202 41.1
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 4.7e-26 122.1 217 41.0
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 6.1e-26 121.7 208 41.8
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 1.4e-25 120.6 205 40.0
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 1.8e-25 120.2 219 40.6
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 3.0e-25 119.4 199 43.7
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 3.0e-25 119.4 209 39.2
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 3.0e-25 119.4 216 44.0
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 3.9e-25 119.0 208 40.9
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 1.1e-24 117.5 221 38.5
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.1e-24 117.5 195 42.6
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.1e-24 117.5 211 39.3
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 2.0e-24 116.7 223 40.4
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 9.7e-24 114.4 223 39.5
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 1.3e-23 114.0 191 44.0
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 2.2e-23 113.2 199 40.2
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 2.2e-23 113.2 199 40.2
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 3.7e-23 112.5 195 39.5
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 3.7e-23 112.5 215 37.7
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 6.3e-23 111.7 192 39.6
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 1.1e-22 110.9 186 43.0
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 1.1e-22 110.9 186 43.0
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 1.1e-22 110.9 197 38.6
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.8e-22 110.2 211 38.9
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.8e-22 110.2 216 37.5
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 2.4e-22 109.8 198 41.4
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 2.4e-22 109.8 218 38.5
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 9.1e-22 107.8 218 41.3
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 9.1e-22 107.8 180 42.8
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 2.0e-21 106.7 197 41.1
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 5.9e-21 105.1 156 43.6
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.0e-20 104.4 195 41.5
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 5.0e-20 102.1 129 51.2
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.1e-19 100.9 125 49.6
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 1.1e-19 100.9 195 37.9
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 3.2e-19 99.4 192 38.5
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 7.2e-19 98.2 196 37.2
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 3.0e-17 92.8 163 41.1
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 1.2e-16 90.9 170 40.6
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 1.7e-15 87.0 157 40.8
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 2.2e-15 86.7 147 44.2
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 3.7e-15 85.9 157 40.8
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 3.1e-14 82.8 115 50.4
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 3.1e-14 82.8 145 40.0
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 7.7e-13 78.2 88 54.5
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 2.9e-12 76.3 198 37.4
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 4.7e-10 68.9 81 51.9
VMungo0540G2292 Vigna mungo HOM05D004016 ORTHO05D004732 4.0e-09 65.9 99 48.5
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 8.8e-09 64.7 141 31.9
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 5.7e-08 62.0 99 41.4
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 1.3e-07 60.8 81 49.4
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 1.7e-07 60.5 55 63.6
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 3.7e-07 59.3 44 61.4
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 1.1e-06 57.8 87 48.3
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 3.1e-06 56.2 97 44.3


User provided reference genes

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