Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G155500 Glycine max HOM05D005331 ORTHO05D007596 9.0e-136 486.9 240 100.0
Glyma.03G153100 Glycine max HOM05D005331 ORTHO05D007596 5.2e-99 364.8 213 89.7
VMungo1383G2522 Vigna mungo HOM05D005331 ORTHO05D007596 2.8e-84 315.8 216 77.8
Phvul.001G150500 Phaseolus vulgaris HOM05D005331 ORTHO05D007596 6.2e-84 314.7 216 76.4
Ca_08578_v3 Cicer arietinum L. HOM05D005331 ORTHO05D007596 9.2e-72 274.2 214 69.6
TPR.G6149 Trifolium pratense HOM05D005331 ORTHO05D007596 2.1e-68 263.1 213 67.1
Lj1g0019807 Lotus japonicus HOM05D005331 ORTHO05D007596 7.6e-66 254.6 217 67.3
Psat3g064480 Pisum sativum HOM05D005331 ORTHO05D007596 4.6e-63 245.4 214 64.0
Medtr7g094800 Medicago truncatula HOM05D005331 ORTHO05D007596 4.0e-59 232.3 213 62.0
arahy.Tifrunner.gnm1.ann1.BTF7DQ Arachis hypogaea HOM05D005331 ORTHO05D007596 6.0e-55 218.4 223 57.0
QL12p021971 Quercus lobata HOM05D005331 ORTHO05D007596 2.1e-52 209.9 226 54.4
arahy.Tifrunner.gnm1.ann1.Z72PTZ Arachis hypogaea HOM05D005331 ORTHO05D007596 6.2e-52 208.4 215 57.2
Nn1g02210 Nelumbo nucifera HOM05D005331 ORTHO05D007596 6.2e-52 208.4 223 56.1
MD03G1266100 Malus domestica HOM05D005331 ORTHO05D007596 3.1e-51 206.1 218 56.9
MD11G1286500 Malus domestica HOM05D005331 ORTHO05D007596 9.0e-51 204.5 219 55.7
Atru.chr5.1429 Acer truncatum HOM05D005331 ORTHO05D007596 1.5e-50 203.8 225 53.3
Haze_04717 Corylus avellana HOM05D005331 ORTHO05D007596 1.3e-49 200.7 165 66.7
FAN15G1459 Fragaria x ananassa HOM05D005331 ORTHO05D007596 1.3e-49 200.7 220 55.0
GSVIVG01011128001 Vitis vinifera HOM05D005331 ORTHO05D007596 1.3e-49 200.7 224 54.0
FAN20G2110 Fragaria x ananassa HOM05D005331 ORTHO05D007596 2.2e-49 199.9 220 54.1
Thecc.01G280200 Theobroma cacao HOM05D005331 ORTHO05D007596 2.2e-49 199.9 225 54.2
Prupe.8G241800 Prunus persica HOM05D005331 ORTHO05D007596 3.8e-49 199.1 223 55.2
FAN24G2921 Fragaria x ananassa HOM05D005331 ORTHO05D007596 1.1e-48 197.6 249 50.2
Duzib138G0982 Durio zibethinus HOM05D005331 ORTHO05D007596 3.2e-48 196.1 227 52.9
Ciclev10023848m.g Citrus clementina HOM05D005331 ORTHO05D007596 4.2e-48 195.7 224 53.1
CiPaw.08G104900 Carya illinoinensis HOM05D005331 ORTHO05D007596 9.3e-48 194.5 225 51.1
TAR633G1479 Trochodendron aralioides HOM05D005331 ORTHO05D007596 1.6e-47 193.7 226 54.4
Manes.05G075600 Manihot esculenta HOM05D005331 ORTHO05D007596 4.6e-47 192.2 152 66.4
RcHm_v2.0_Chr6g0291131 Rosa chinensis HOM05D005331 ORTHO05D007596 1.3e-46 190.7 225 53.3
CSS0033819 Camellia sinensis var. sinensis HOM05D005331 ORTHO05D007596 1.8e-46 190.3 223 56.1
Gorai.008G004800 Gossypium raimondii HOM05D005331 ORTHO05D007596 3.9e-46 189.1 226 50.4
Gohir.A12G005400 Gossypium hirsutum HOM05D005331 ORTHO05D007596 5.1e-46 188.7 226 50.9
Actinidia24888 Actinidia chinensis HOM05D005331 ORTHO05D007596 6.7e-46 188.3 161 61.5
Gohir.D12G004900 Gossypium hirsutum HOM05D005331 ORTHO05D007596 8.7e-46 188.0 226 50.9
CSS0010605 Camellia sinensis var. sinensis HOM05D005331 ORTHO05D007596 1.5e-45 187.2 130 78.5
PSO302G0146 Papaver somniferum HOM05D005331 ORTHO05D007596 2.5e-45 186.4 200 59.0
Sabra02G0043800 Salix brachista HOM05D005331 ORTHO05D007596 9.6e-45 184.5 161 64.6
COL.COLO4_09103 Corchorus olitorius HOM05D005331 ORTHO05D007596 1.3e-44 184.1 156 64.7
Rhsim01G0275000 Rhododendron simsii HOM05D005331 ORTHO05D007596 6.2e-44 181.8 160 61.9
CANSAT25G3094 Cannabis sativa HOM05D005331 ORTHO05D007596 1.1e-43 181.0 220 50.5
PSO170G4087 Papaver somniferum HOM05D005331 ORTHO05D007596 1.1e-43 181.0 160 65.0
Lj2A469T42 Lonicera japonica HOM05D005331 ORTHO05D007596 1.8e-43 180.3 163 63.2
Potri.002G053900 Populus trichocarpa HOM05D005331 ORTHO05D007596 1.8e-43 180.3 161 62.7
Cpa.g.sc52.30 Carica papaya HOM05D005331 ORTHO05D007596 9.0e-43 177.9 157 63.1
DCAR_012471 Daucus carota HOM05D005331 ORTHO05D007596 9.0e-43 177.9 162 59.9
Eucgr.K03374 Eucalyptus grandis HOM05D005331 ORTHO05D007596 1.5e-42 177.2 225 50.2
Aa31LG5G5400 Aethionema arabicum HOM05D005331 ORTHO05D007596 1.3e-41 174.1 161 58.4
CsaV3_6G037090 Cucumis sativus L. HOM05D005331 ORTHO05D007596 4.9e-41 172.2 185 55.7
AL4G26780 Arabidopsis lyrata HOM05D005331 ORTHO05D007596 6.4e-41 171.8 165 58.8
MELO3C014403.2 Cucumis melo HOM05D005331 ORTHO05D007596 6.4e-41 171.8 185 55.1
BcaB01g04039 Brassica carinata HOM05D005331 ORTHO05D007596 1.1e-40 171.0 166 58.4
TWI14G1044 Tripterygium wilfordii HOM05D005331 ORTHO05D007596 1.1e-40 171.0 157 58.6
CAN.G567.46 Capsicum annuum HOM05D005331 ORTHO05D007596 1.9e-40 170.2 160 59.4
Lalb_Chr01g0013751 Lupinus albus HOM05D005331 ORTHO05D007596 1.9e-40 170.2 217 50.7
Carub.0004s1284 Capsella rubella HOM05D005331 ORTHO05D007596 2.4e-40 169.9 162 58.0
Thhalv10016447m.g Eutrema salsugineum HOM05D005331 ORTHO05D007596 3.2e-40 169.5 167 58.1
Sopen09g026840 Solanum pennellii HOM05D005331 ORTHO05D007596 3.2e-40 169.5 152 60.5
ClCG07G000230 Citrullus lanatus HOM05D005331 ORTHO05D007596 4.2e-40 169.1 137 65.7
PGR044G2121 Punica granatum HOM05D005331 ORTHO05D007596 4.2e-40 169.1 218 48.2
AT2G31530 Arabidopsis thaliana HOM05D005331 ORTHO05D007596 5.5e-40 168.7 164 56.1
Nitab4.5_0010448g0040 Nicotiana tabacum HOM05D005331 ORTHO05D007596 5.5e-40 168.7 185 53.5
Solyc09g065120.4 Solanum lycopersicum HOM05D005331 ORTHO05D007596 5.5e-40 168.7 152 59.9
Sed0009831 Sechium edule HOM05D005331 ORTHO05D007596 7.1e-40 168.3 162 60.5
Nitab4.5_0001028g0020 Nicotiana tabacum HOM05D005331 ORTHO05D007596 9.3e-40 167.9 139 64.7
THA.LOC104817518 Tarenaya hassleriana HOM05D005331 ORTHO05D007596 2.1e-39 166.8 159 57.9
Peaxi162Scf01622g00017 Petunia axillaris HOM05D005331 ORTHO05D007596 3.5e-39 166.0 152 59.9
BcaC01g05946 Brassica carinata HOM05D005331 ORTHO05D007596 4.6e-39 165.6 170 54.7
C03p20770 Brassica napus HOM05D005331 ORTHO05D007596 4.6e-39 165.6 170 54.7
Migut.N02164 Erythranthe guttata HOM05D005331 ORTHO05D007596 4.6e-39 165.6 105 78.1
Sp4g13980 Schrenkiella parvula HOM05D005331 ORTHO05D007596 4.6e-39 165.6 166 57.2
BolC3t14446H Brassica oleracea HOM05D005331 ORTHO05D007596 6.0e-39 165.2 170 54.7
Cc01_g19540 Coffea canephora HOM05D005331 ORTHO05D007596 7.9e-39 164.9 118 72.9
BraA03t11033Z Brassica rapa HOM05D005331 ORTHO05D007596 1.3e-38 164.1 191 52.9
A03p17680 Brassica napus HOM05D005331 ORTHO05D007596 1.8e-38 163.7 157 58.6
Oeu028078.2 Olea europaea HOM05D005331 ORTHO05D007596 2.3e-38 163.3 183 52.5
DCAR_032170 Daucus carota HOM05D005331 ORTHO05D007596 3.9e-38 162.5 161 56.5
EL10Ac4g08368 Beta vulgaris HOM05D005331 ORTHO05D007596 6.7e-38 161.8 184 52.7
CARHR125170 Cardamine hirsuta HOM05D005331 ORTHO05D007596 6.7e-38 161.8 160 53.1
CDE04G0111 Ceratophyllum demersum HOM05D005331 ORTHO05D007596 1.5e-37 160.6 155 56.1
ATR0626G344 Amborella trichopoda HOM05D005331 ORTHO05D007596 2.5e-37 159.8 118 69.5
Aqoxy2G03313 Aquilegia oxysepala HOM05D005331 ORTHO05D007596 4.3e-37 159.1 121 69.4
Ah.04g164200 Amaranthus hybridus HOM05D005331 ORTHO05D007596 5.6e-37 158.7 167 55.7
SalBow6G0673 Salvia bowleyana HOM05D005331 ORTHO05D007596 8.2e-36 154.8 105 69.5
HPP92_001334 Vanilla planifolia HOM05D005331 ORTHO05D007596 8.2e-36 154.8 165 55.8
ECA247G2661 Erigeron canadensis HOM05D005331 ORTHO05D007596 1.1e-35 154.5 107 74.8
Lsat_1_v5_gn_9_3840 Lactuca sativa HOM05D005331 ORTHO05D007596 3.1e-35 152.9 107 75.7
AUR62018058 Chenopodium quinoa HOM05D005331 ORTHO05D007596 9.0e-35 151.4 154 59.7
AUR62015257 Chenopodium quinoa HOM05D005331 ORTHO05D007596 1.2e-34 151.0 106 73.6
SGA_v2.0_scaffold81G25989 Striga asiatica HOM05D005331 ORTHO05D007596 1.2e-34 151.0 104 72.1
Sc24g0003040 Simmondsia chinensis HOM05D005331 ORTHO05D007596 2.0e-34 150.2 118 61.9
HanXRQChr13g0386871 Helianthus annuus HOM05D005331 ORTHO05D007596 3.4e-34 149.4 94 79.8
HanXRQChr10g0282731 Helianthus annuus HOM05D005331 ORTHO05D007596 1.0e-33 147.9 93 80.6
Mapoly0002s0128 Marchantia polymorpha HOM05D005331 ORTHO05D007596 4.2e-32 142.5 178 47.8
Zm00001eb287470 Zea mays HOM05D005331 ORTHO05D007596 1.0e-30 137.9 116 64.7
HPP92_001779 Vanilla planifolia HOM05D005331 ORTHO05D018710 3.9e-30 136.0 157 51.6
Os05g0397700 Oryza sativa ssp. japonica HOM05D005331 ORTHO05D007596 3.3e-29 132.9 93 72.0
CAN.G904.2 Capsicum annuum HOM05D005331 ORTHO05D018710 3.7e-28 129.4 90 73.3
SEGI_01497 Sequoiadendron giganteum HOM05D005331 ORTHO05D007596 1.1e-27 127.9 148 52.0
Pp3c15_8820 Physcomitrium patens HOM05D005331 ORTHO05D007596 1.8e-27 127.1 155 49.7
AagrBONN_evm.TU.Sc2ySwM_344.2919 Anthoceros agrestis HOM05D005331 ORTHO05D007596 3.6e-23 112.8 128 49.2
Hund10478 Selenicereus undatus HOM05D005331 ORTHO05D007596 1.8e-22 110.5 93 62.4
CBR_g25857 Chara braunii HOM05D005331 ORTHO05D007596 8.7e-22 108.2 95 54.7
SMO275G0046 Selaginella moellendorffii HOM05D005331 ORTHO05D007596 5.7e-21 105.5 138 40.6
C06p10110 Brassica napus HOM05D005331 ORTHO05D018710 6.9e-19 98.6 56 83.9
SMO367G0256 Selaginella moellendorffii HOM05D005331 ORTHO05D007596 6.9e-19 98.6 144 38.9
A10p17750 Brassica napus HOM05D005331 ORTHO05D018710 9.1e-19 98.2 56 83.9
vmacro14920 Vaccinium macrocarpon HOM05D005331 ORTHO05D007596 4.5e-18 95.9 164 42.1
Dinv34748 Davidia involucrata HOM05D005331 ORTHO05D007596 2.1e-15 87.0 162 39.5
unitig_744.g24627 Utricularia gibba HOM05D005331 ORTHO05D007596 3.0e-14 83.2 57 66.7
BraA09t41203Z Brassica rapa HOM05D005331 ORTHO05D018710 4.4e-13 79.3 44 86.4
BraA04t16189Z Brassica rapa HOM05D005331 ORTHO05D018710 6.3e-12 75.5 44 84.1
RcHm_v2.0_Chr5g0070641 Rosa chinensis HOM05D005331 ORTHO05D007596 5.9e-10 68.9 108 45.4
C04p60930 Brassica napus HOM05D005331 ORTHO05D097229 1.0e-06 58.2 72 47.2


User provided reference genes

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