Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 5.8e-107 391.0 206 100.0
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 6.0e-96 354.4 206 91.3
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 1.8e-84 316.2 208 82.7
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 7.6e-83 310.8 207 82.6
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 1.4e-63 246.9 202 68.8
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 3.0e-63 245.7 188 70.7
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 2.4e-60 236.1 179 72.6
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 2.4e-60 236.1 179 72.6
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 1.3e-58 230.3 181 70.2
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 6.7e-55 218.0 222 60.4
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 5.7e-54 214.9 140 82.9
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 7.4e-54 214.5 183 66.1
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 2.7e-40 169.5 222 49.1
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 4.7e-40 168.7 226 50.4
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 5.2e-39 165.2 187 50.3
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 6.8e-39 164.9 221 48.9
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 1.5e-38 163.7 188 48.4
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 2.6e-38 162.9 175 53.1
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 2.6e-38 162.9 221 46.6
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 5.7e-38 161.8 189 51.3
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 1.7e-37 160.2 194 48.5
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 2.8e-37 159.5 183 48.6
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 3.7e-37 159.1 196 48.5
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 6.3e-37 158.3 203 44.3
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 1.1e-36 157.5 195 49.2
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 1.8e-36 156.8 202 47.0
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 2.4e-36 156.4 202 48.5
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 3.1e-36 156.0 181 49.2
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 3.1e-36 156.0 198 46.5
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 4.1e-36 155.6 210 45.7
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 4.1e-36 155.6 194 45.9
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 4.1e-36 155.6 178 50.0
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 4.1e-36 155.6 213 46.0
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 5.4e-36 155.2 199 48.2
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 5.4e-36 155.2 190 51.6
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 5.4e-36 155.2 198 48.0
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 7.0e-36 154.8 174 51.1
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 7.0e-36 154.8 199 46.7
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 9.1e-36 154.5 180 48.9
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 9.1e-36 154.5 185 47.6
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 1.2e-35 154.1 180 48.3
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 1.2e-35 154.1 186 47.3
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 1.6e-35 153.7 190 49.5
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 2.0e-35 153.3 172 50.6
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 2.0e-35 153.3 198 44.9
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 2.0e-35 153.3 214 43.9
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 2.7e-35 152.9 212 46.2
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 2.7e-35 152.9 194 51.5
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 2.7e-35 152.9 203 49.8
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 3.5e-35 152.5 206 47.1
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 4.5e-35 152.1 198 44.4
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 4.5e-35 152.1 224 44.6
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 5.9e-35 151.8 201 43.8
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 7.7e-35 151.4 211 44.1
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 7.7e-35 151.4 185 52.4
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 7.7e-35 151.4 188 48.9
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 1.3e-34 150.6 194 43.3
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 1.3e-34 150.6 188 49.5
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.7e-34 150.2 179 48.6
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 2.3e-34 149.8 231 45.0
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 2.9e-34 149.4 207 42.5
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 3.8e-34 149.1 214 43.5
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 3.8e-34 149.1 214 43.5
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 5.0e-34 148.7 183 48.6
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 5.0e-34 148.7 219 43.4
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 5.0e-34 148.7 185 50.3
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 5.0e-34 148.7 181 49.7
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 5.0e-34 148.7 181 49.7
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 5.0e-34 148.7 197 47.2
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 6.5e-34 148.3 218 44.5
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 6.5e-34 148.3 179 51.4
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 6.5e-34 148.3 181 49.7
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 8.6e-34 147.9 221 43.0
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 8.6e-34 147.9 181 49.2
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 1.1e-33 147.5 182 50.5
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.1e-33 147.5 181 49.2
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 1.1e-33 147.5 189 48.7
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 1.5e-33 147.1 218 44.5
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.9e-33 146.7 204 45.1
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 1.9e-33 146.7 212 44.3
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 2.5e-33 146.4 198 46.0
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 2.5e-33 146.4 190 47.9
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 9.5e-33 144.4 202 46.5
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 1.2e-32 144.1 178 50.6
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 1.2e-32 144.1 196 47.4
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 1.6e-32 143.7 268 39.9
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 1.6e-32 143.7 189 47.6
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 2.8e-32 142.9 197 43.7
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 3.6e-32 142.5 168 51.8
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 3.6e-32 142.5 173 49.1
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 3.6e-32 142.5 185 45.9
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 4.7e-32 142.1 191 45.5
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 4.7e-32 142.1 189 48.1
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 4.7e-32 142.1 190 47.9
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 8.0e-32 141.4 171 49.1
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 8.0e-32 141.4 200 44.0
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 1.8e-31 140.2 238 39.9
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 3.0e-31 139.4 225 39.1
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 6.8e-31 138.3 181 48.1
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 1.5e-30 137.1 198 44.4
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 1.5e-30 137.1 209 44.0
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 2.6e-30 136.3 198 46.0
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 7.5e-30 134.8 233 41.2
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 1.7e-29 133.7 176 46.0
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 2.2e-29 133.3 189 43.4
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 2.2e-29 133.3 169 48.5
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 4.9e-29 132.1 164 47.6
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 2.4e-28 129.8 190 41.1
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 2.0e-27 126.7 162 51.9
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 1.0e-26 124.4 165 49.1
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 4.6e-19 99.0 156 43.6
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 1.0e-18 97.8 106 50.0
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 4.7e-16 89.0 122 43.4
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 6.8e-15 85.1 189 34.4
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 8.9e-15 84.7 92 50.0
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 5.8e-14 82.0 287 29.3
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 1.6e-11 73.9 77 53.2
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 1.3e-10 70.9 125 38.4
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 3.0e-10 69.7 200 28.5
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 9.5e-09 64.7 48 64.6
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 9.5e-09 64.7 213 28.2
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 3.6e-08 62.8 146 28.8
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.4e-07 60.8 59 47.5
TPR.G38169 Trifolium pratense HOM05D006240 ORTHO05D007709 3.4e-06 56.2 115 38.3


User provided reference genes

Program Settings