Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G150500 Glycine max HOM05D004031 ORTHO05D011186 5.8e-29 130.2 65 100.0
Glyma.03G147100 Glycine max HOM05D004031 ORTHO05D011186 1.5e-21 105.5 81 72.8
Phvul.001G144800 Phaseolus vulgaris HOM05D004031 ORTHO05D011186 1.5e-21 105.5 60 85.0
Lj1g0020490 Lotus japonicus HOM05D004031 ORTHO05D011186 1.4e-19 99.0 55 85.5
Lalb_Chr15g0079141 Lupinus albus HOM05D004031 ORTHO05D011186 2.5e-19 98.2 59 79.7
Medtr7g093770 Medicago truncatula HOM05D004031 ORTHO05D011186 2.7e-18 94.7 57 80.7
GSVIVG01033459001 Vitis vinifera HOM05D004031 ORTHO05D011186 1.8e-17 92.0 60 76.7
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 1.9e-16 88.6 60 75.0
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 5.7e-16 87.0 54 72.2
Manes.09G038400 Manihot esculenta HOM05D004031 ORTHO05D011186 7.4e-16 86.7 54 77.8
Potri.016G060550 Populus trichocarpa HOM05D004031 ORTHO05D011186 7.4e-16 86.7 54 75.9
Eucgr.K01857 Eucalyptus grandis HOM05D004031 ORTHO05D011186 9.6e-16 86.3 53 81.1
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 1.3e-15 85.9 55 70.9
Thecc.05G176000 Theobroma cacao HOM05D004031 ORTHO05D011186 1.6e-15 85.5 54 75.9
CDE05G3199 Ceratophyllum demersum HOM05D004031 ORTHO05D011186 2.1e-15 85.1 54 75.9
Nn7g35951 Nelumbo nucifera HOM05D004031 ORTHO05D011186 2.1e-15 85.1 54 72.2
MD12G1054200 Malus domestica HOM05D004031 ORTHO05D011186 2.8e-15 84.7 55 74.5
Prupe.7G082600 Prunus persica HOM05D004031 ORTHO05D011186 2.8e-15 84.7 55 74.5
Sed0024429 Sechium edule HOM05D004031 ORTHO05D011186 3.7e-15 84.3 53 75.5
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 4.8e-15 84.0 51 74.5
Gohir.D01G124600 Gossypium hirsutum HOM05D004031 ORTHO05D011186 1.1e-14 82.8 54 74.1
Nn7g36859 Nelumbo nucifera HOM05D004031 ORTHO05D011186 1.1e-14 82.8 58 70.7
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 1.4e-14 82.4 53 75.5
CiPaw.09G027900 Carya illinoinensis HOM05D004031 ORTHO05D011186 1.8e-14 82.0 60 68.3
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 1.8e-14 82.0 62 66.1
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 1.8e-14 82.0 53 71.7
MELO3C009606.2 Cucumis melo HOM05D004031 ORTHO05D011186 2.4e-14 81.6 53 71.7
Gohir.A01G137400 Gossypium hirsutum HOM05D004031 ORTHO05D011186 3.1e-14 81.3 54 72.2
RcHm_v2.0_Chr3g0479131 Rosa chinensis HOM05D004031 ORTHO05D011186 3.1e-14 81.3 60 66.7
Migut.J01860 Erythranthe guttata HOM05D004031 ORTHO05D011186 9.0e-14 79.7 56 66.1
CSS0013106 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D011186 1.2e-13 79.3 51 68.6
Cc06_g15560 Coffea canephora HOM05D004031 ORTHO05D011186 1.2e-13 79.3 59 64.4
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 2.0e-13 78.6 60 63.3
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 2.0e-13 78.6 60 63.3
Duzib128G0401 Durio zibethinus HOM05D004031 ORTHO05D011186 2.6e-13 78.2 54 70.4
Hma1.2p1_0124F.1_g058300 Hydrangea macrophylla HOM05D004031 ORTHO05D011186 4.5e-13 77.4 54 70.4
A03p37430 Brassica napus HOM05D004031 ORTHO05D011186 1.3e-12 75.9 56 69.6
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 2.9e-12 74.7 55 67.3
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 2.9e-12 74.7 56 67.9
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 2.9e-12 74.7 56 67.9
Carub.0003s1134 Capsella rubella HOM05D004031 ORTHO05D011186 5.0e-12 73.9 55 69.1
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 6.5e-12 73.6 57 57.9
Aa31LG3G5490 Aethionema arabicum HOM05D004031 ORTHO05D011186 1.4e-11 72.4 60 60.0
Aa31LG3G5450 Aethionema arabicum HOM05D004031 ORTHO05D011186 1.9e-11 72.0 60 60.0
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 2.5e-11 71.6 56 66.1
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 9.3e-11 69.7 57 64.9
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 9.3e-11 69.7 57 64.9
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 9.3e-11 69.7 58 65.5
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 1.3e-09 65.9 38 76.3
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.3e-07 59.3 35 71.4
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 1.6e-07 58.9 33 75.8
Mapoly0005s0168 Marchantia polymorpha HOM05D004031 ORTHO05D011186 2.2e-07 58.5 48 52.1
SHI31744 Sapria himalayana HOM05D004031 ORTHO05D011186 4.8e-07 57.4 39 64.1
Hund06156 Selenicereus undatus HOM05D000159 ORTHO05D011186 6.3e-07 57.0 34 67.6
Sed0004834 Sechium edule HOM05D004031 ORTHO05D011186 8.2e-07 56.6 60 53.3
SEGI_01182 Sequoiadendron giganteum HOM05D004031 ORTHO05D011186 1.1e-06 56.2 37 67.6


User provided reference genes

Program Settings