Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 0.0e+00 1467.2 765 100.0
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 0.0e+00 1331.6 765 91.6
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 0.0e+00 1270.0 765 87.8
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 0.0e+00 1218.4 765 84.6
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 0.0e+00 1196.8 765 83.1
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 0.0e+00 1188.7 766 82.0
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 0.0e+00 1184.5 765 81.7
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 0.0e+00 1183.3 765 82.6
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 0.0e+00 1177.9 765 81.7
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 0.0e+00 1177.5 793 79.6
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 0.0e+00 1173.3 765 82.4
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 0.0e+00 1160.2 707 87.1
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 3.8e-297 1024.6 783 69.1
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 2.1e-295 1018.8 783 69.7
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 6.6e-289 997.3 773 67.7
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 1.1e-288 996.5 778 67.7
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.7e-287 991.1 804 67.2
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 2.3e-286 988.8 769 68.9
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 1.3e-284 983.0 784 67.9
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 1.1e-283 979.9 785 67.5
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 1.9e-283 979.2 769 68.1
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 3.2e-283 978.4 782 67.5
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 4.6e-282 974.5 781 67.0
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 1.1e-280 969.9 811 64.9
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 2.5e-280 968.8 782 66.8
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 1.2e-279 966.5 782 65.6
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 6.2e-279 964.1 791 66.5
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 5.2e-278 961.1 766 65.8
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.3e-276 956.4 768 66.9
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 4.6e-274 948.0 768 65.4
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 6.0e-274 947.6 777 65.0
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 1.3e-273 946.4 769 65.7
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 1.7e-273 946.0 769 65.4
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 1.4e-270 936.4 760 66.3
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 4.4e-269 931.4 748 67.8
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 9.9e-269 930.2 762 64.8
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 9.9e-269 930.2 770 65.1
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 2.9e-268 928.7 772 64.5
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 1.4e-267 926.4 777 62.7
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 3.2e-267 925.2 815 62.9
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 4.6e-266 921.4 808 62.3
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 7.8e-266 920.6 770 63.1
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 1.8e-262 909.4 781 64.0
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 4.0e-262 908.3 783 64.0
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 4.4e-261 904.8 769 64.1
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 3.2e-259 898.7 808 61.9
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.7e-257 892.9 762 61.3
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 4.3e-256 888.3 770 60.3
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 1.2e-253 880.2 789 62.7
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 6.4e-252 874.4 786 61.1
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 8.4e-252 874.0 769 61.1
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 1.1e-251 873.6 772 61.1
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 5.4e-251 871.3 778 60.3
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 9.3e-251 870.5 773 60.4
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 2.7e-250 869.0 764 60.3
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 4.6e-250 868.2 773 60.5
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 1.9e-248 862.8 777 60.4
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 1.4e-246 856.7 760 63.0
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 1.2e-245 853.6 785 59.6
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.5e-245 853.2 815 58.3
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 2.9e-244 849.0 948 53.9
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 6.4e-244 847.8 782 59.6
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 2.7e-242 842.4 801 57.2
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 7.9e-242 840.9 784 58.4
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 1.5e-240 836.6 765 57.9
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 4.3e-240 835.1 762 57.9
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 6.5e-236 821.2 800 56.6
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.6e-234 816.6 724 59.9
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 4.6e-234 815.1 780 57.7
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 1.1e-232 810.4 754 58.4
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 3.8e-228 795.4 765 56.2
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 1.4e-227 793.5 789 56.4
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 1.6e-226 790.0 768 57.3
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 6.1e-226 788.1 768 57.4
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 8.7e-225 784.3 799 54.2
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 1.6e-223 780.0 790 55.8
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 6.3e-223 778.1 750 55.6
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 4.1e-222 775.4 749 55.7
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 1.2e-221 773.9 750 55.2
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 2.0e-221 773.1 760 55.4
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 1.7e-220 770.0 766 55.0
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 1.1e-219 767.3 766 55.0
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.4e-217 760.4 641 65.1
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 2.8e-215 752.7 765 54.4
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.2e-213 747.3 760 52.4
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 1.9e-211 740.0 801 51.4
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 1.6e-210 736.9 796 52.0
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 2.2e-204 716.5 765 52.8
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 5.0e-204 715.3 770 53.0
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 6.7e-201 704.9 754 50.1
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 1.5e-187 660.6 637 58.1
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 5.5e-187 658.7 762 49.2
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 1.2e-186 657.5 764 49.7
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 1.2e-186 657.5 764 49.7
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 1.2e-186 657.5 764 49.7
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 3.1e-182 642.9 459 71.0
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 4.7e-178 629.0 727 50.3
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 4.6e-173 612.5 769 45.3
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 4.3e-171 605.9 623 54.9
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 2.3e-169 600.1 524 64.7
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 2.0e-168 597.0 723 48.4
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 8.3e-167 591.7 856 40.8
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 7.8e-165 585.1 642 55.0
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 2.8e-162 576.6 581 55.4
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 7.5e-160 568.5 423 67.8
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 3.7e-151 539.7 461 58.8
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 1.6e-149 534.3 747 41.5
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 3.9e-148 529.6 620 48.9
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 2.1e-141 507.3 558 52.5
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.5e-139 501.1 521 55.7
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 2.9e-119 433.7 260 81.2
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 2.2e-111 407.5 362 63.3
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 3.7e-106 390.2 598 41.6
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 3.2e-102 377.1 536 45.9
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 6.5e-79 299.7 194 71.6
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 2.7e-72 277.7 194 74.7
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 1.2e-67 262.3 169 75.7
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.6e-53 215.3 143 69.2
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 4.6e-48 197.2 142 63.4
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.1e-46 192.6 118 80.5
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 1.9e-46 191.8 143 63.6
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 4.7e-45 187.2 142 59.9
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 3.4e-43 181.0 141 70.2
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 4.9e-42 177.2 135 61.5
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 3.1e-36 157.9 116 69.8
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 8.9e-36 156.4 86 89.5
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 5.6e-30 137.1 157 40.8
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.3e-26 125.9 91 64.8
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 3.8e-26 124.4 101 58.4
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 5.4e-25 120.6 74 78.4
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 7.8e-24 116.7 90 58.9
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 7.8e-24 116.7 90 58.9
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 1.6e-21 109.0 779 21.7
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 6.2e-21 107.1 248 28.2
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 2.4e-17 95.1 149 36.9
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 8.7e-15 86.7 301 28.9
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 3.3e-14 84.7 567 20.5
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 2.0e-11 75.5 52 69.2
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 7.6e-11 73.6 47 74.5
Hund07844 Selenicereus undatus HOM05D004031 ORTHO05D006678 2.3e-07 62.0 65 50.8
Medtr8g106830 Medicago truncatula HOM05D004031 ORTHO05D006678 1.9e-06 58.9 49 65.3
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 1.9e-06 58.9 70 50.0


User provided reference genes

Program Settings