Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 7.8e-106 387.1 191 100.0
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 6.6e-89 330.9 197 86.8
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.9e-75 286.2 201 79.6
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 1.2e-74 283.5 201 80.1
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 5.6e-56 221.5 203 62.6
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 3.1e-54 215.7 200 64.5
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 3.1e-54 215.7 207 62.3
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 1.1e-51 207.2 200 59.0
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 9.3e-51 204.1 209 56.5
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 2.7e-50 202.6 208 59.1
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 1.3e-49 200.3 217 53.9
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.8e-46 189.9 207 54.6
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 6.9e-46 188.0 208 53.4
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 9.0e-46 187.6 210 53.8
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 5.0e-44 181.8 202 55.0
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 4.2e-43 178.7 203 54.2
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 1.8e-41 173.3 213 47.9
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 3.0e-41 172.6 218 47.7
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 5.1e-41 171.8 215 52.6
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 8.7e-41 171.0 219 49.8
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 1.1e-40 170.6 218 47.7
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 1.1e-40 170.6 208 50.0
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.1e-40 170.6 214 50.0
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.5e-40 170.2 163 60.7
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 4.3e-40 168.7 208 47.1
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 5.7e-40 168.3 221 48.0
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.3e-39 167.2 215 48.8
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 2.8e-39 166.0 220 46.4
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.7e-39 165.6 209 49.8
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 4.8e-39 165.2 216 48.6
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 6.3e-39 164.9 216 50.0
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 5.3e-38 161.8 202 49.0
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 9.1e-38 161.0 220 49.1
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 9.1e-38 161.0 217 47.9
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.0e-37 159.8 209 48.8
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.0e-37 159.8 209 48.8
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 2.6e-37 159.5 216 46.8
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 5.9e-37 158.3 216 47.7
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.9e-37 158.3 217 47.5
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.3e-36 157.1 198 47.5
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 2.9e-36 156.0 205 47.8
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 5.0e-36 155.2 190 47.9
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.9e-35 153.3 197 48.2
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 1.9e-35 153.3 211 46.0
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 9.4e-35 151.0 201 47.3
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 9.4e-35 151.0 194 46.9
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.7e-34 149.4 214 47.2
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 4.6e-34 148.7 210 45.2
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 6.1e-34 148.3 202 44.6
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 1.0e-33 147.5 219 43.8
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 2.3e-33 146.4 222 42.8
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 8.8e-33 144.4 214 47.7
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 8.8e-33 144.4 214 46.3
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.5e-32 143.7 207 44.4
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 2.6e-32 142.9 204 46.1
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.7e-32 141.7 227 43.2
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.4e-32 141.4 210 45.2
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 7.4e-32 141.4 187 48.1
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 9.7e-32 141.0 204 42.6
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 9.7e-32 141.0 216 44.4
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 1.3e-31 140.6 226 42.5
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.2e-31 139.8 227 43.2
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 2.2e-31 139.8 220 44.5
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 2.8e-31 139.4 223 41.7
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.7e-31 139.0 227 42.7
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 8.2e-31 137.9 208 45.2
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 8.2e-31 137.9 214 43.5
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.1e-30 137.5 235 41.7
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 2.4e-30 136.3 203 43.8
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 3.1e-30 136.0 227 42.3
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.1e-30 136.0 227 42.3
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.1e-30 136.0 227 42.3
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 4.1e-30 135.6 215 40.5
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 5.3e-30 135.2 178 49.4
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.3e-30 135.2 210 44.3
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 6.9e-30 134.8 210 44.3
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 2.0e-29 133.3 228 41.7
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 2.6e-29 132.9 207 44.4
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 3.4e-29 132.5 226 42.5
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 7.7e-29 131.3 185 44.9
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.3e-28 130.6 184 47.3
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 1.3e-28 130.6 226 41.6
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.7e-28 130.2 227 40.5
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.7e-28 130.2 183 47.0
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.9e-28 129.4 172 44.2
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 3.8e-28 129.0 173 48.0
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 5.0e-28 128.6 196 42.9
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 6.5e-28 128.3 173 47.4
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 6.5e-28 128.3 201 43.8
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 1.1e-27 127.5 178 46.6
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 1.1e-27 127.5 188 45.2
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 1.4e-27 127.1 178 46.6
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.4e-27 127.1 186 45.2
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 2.5e-27 126.3 190 43.2
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 2.5e-27 126.3 191 42.9
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 5.5e-27 125.2 174 46.6
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 7.2e-27 124.8 177 44.6
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 7.2e-27 124.8 177 46.9
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 7.2e-27 124.8 222 41.0
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 7.2e-27 124.8 198 41.4
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 7.2e-27 124.8 206 44.2
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 7.2e-27 124.8 220 40.0
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 9.4e-27 124.4 177 45.8
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 9.4e-27 124.4 214 43.0
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 9.4e-27 124.4 192 40.6
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 9.4e-27 124.4 197 44.7
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 9.4e-27 124.4 197 44.7
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-26 124.0 174 46.6
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.2e-26 124.0 211 43.1
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 1.2e-26 124.0 183 47.5
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.6e-26 123.6 218 40.4
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.7e-26 122.9 178 45.5
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 3.6e-26 122.5 193 44.0
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 6.1e-26 121.7 173 48.0
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 6.1e-26 121.7 172 47.7
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 1.4e-25 120.6 198 40.4
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 6.7e-25 118.2 175 44.6
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 8.8e-25 117.9 172 43.6
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 8.8e-25 117.9 175 47.4
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 1.1e-24 117.5 206 41.3
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 1.5e-24 117.1 181 45.3
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.0e-24 116.7 174 43.1
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 2.6e-24 116.3 174 45.4
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 2.6e-24 116.3 182 43.4
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 4.4e-24 115.5 156 46.8
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 4.4e-24 115.5 183 43.7
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 4.4e-24 115.5 190 43.2
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.7e-24 115.2 201 37.8
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 5.7e-24 115.2 189 40.2
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 5.7e-24 115.2 195 41.5
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 7.4e-24 114.8 176 41.5
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 9.7e-24 114.4 223 37.2
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 2.2e-23 113.2 176 43.2
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 2.8e-23 112.8 173 41.6
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 8.2e-23 111.3 197 37.1
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 8.2e-23 111.3 199 38.2
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.1e-22 110.9 216 37.0
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.4e-22 110.5 223 36.3
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 2.4e-22 109.8 222 36.0
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 4.1e-22 109.0 186 39.2
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 5.3e-22 108.6 212 37.3
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 1.2e-21 107.5 201 41.8
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-21 107.5 205 37.1
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 3.5e-21 105.9 163 42.9
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.7e-20 103.6 152 40.8
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.2e-20 103.2 206 36.9
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 5.0e-20 102.1 195 35.9
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 6.5e-20 101.7 195 35.9
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 1.9e-19 100.1 178 39.3
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.5e-19 99.8 119 45.4
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.5e-19 99.8 177 40.7
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 3.2e-19 99.4 162 40.7
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 3.2e-19 99.4 124 48.4
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 7.2e-19 98.2 193 39.9
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 6.1e-18 95.1 135 42.2
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 1.0e-17 94.4 126 46.8
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 4.0e-17 92.4 206 37.4
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 8.8e-17 91.3 182 37.9
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 1.5e-16 90.5 185 36.8
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 1.5e-16 90.5 223 31.8
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.5e-16 90.5 185 36.8
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 1.5e-16 90.5 223 31.8
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 1.5e-16 90.5 174 40.8
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 2.0e-16 90.1 176 37.5
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 3.3e-16 89.4 185 36.2
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 4.4e-16 89.0 176 37.5
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 4.4e-16 89.0 223 31.8
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.2e-15 86.7 176 37.5
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.8e-15 86.3 180 36.1
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 6.3e-15 85.1 126 44.4
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 4.1e-14 82.4 124 43.5
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.1e-14 82.4 104 47.1
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.5e-13 79.3 281 29.2
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 2.2e-12 76.6 149 36.9
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.9e-12 76.3 114 44.7
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 6.5e-12 75.1 147 35.4
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 8.5e-12 74.7 146 35.6
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 5.5e-11 72.0 170 32.4
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 7.2e-11 71.6 170 33.5
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 4.7e-10 68.9 81 51.9
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 2.8e-07 59.7 71 49.3
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 3.7e-07 59.3 200 29.0
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 8.3e-07 58.2 72 50.0
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 5.4e-06 55.5 149 32.2


User provided reference genes

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