Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 3.5e-74 281.6 146 100.0
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 1.6e-47 193.0 121 86.0
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 2.5e-43 179.1 122 80.3
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.9e-36 155.6 116 74.1
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 4.5e-29 131.7 111 71.2
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 1.0e-25 120.6 115 61.7
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 5.3e-22 108.2 98 56.1
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 7.0e-22 107.8 98 56.1
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 1.0e-20 104.0 83 60.2
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 1.0e-20 104.0 111 52.3
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.7e-20 103.2 113 50.4
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 6.5e-20 101.3 71 69.0
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 1.1e-19 100.5 89 58.4
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 1.4e-19 100.1 123 49.6
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.9e-19 99.8 62 71.0
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.9e-19 99.8 62 71.0
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.9e-19 99.8 107 50.5
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 1.9e-19 99.8 88 59.1
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 2.5e-19 99.4 138 44.9
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 2.5e-19 99.4 114 49.1
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.5e-19 99.4 117 47.9
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.5e-19 99.4 112 48.2
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 3.2e-19 99.0 119 51.3
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 4.2e-19 98.6 128 43.8
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 7.2e-19 97.8 58 75.9
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 9.4e-19 97.4 116 49.1
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 9.4e-19 97.4 136 44.1
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 1.2e-18 97.1 65 78.5
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 1.2e-18 97.1 106 44.3
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 1.6e-18 96.7 112 51.8
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.1e-18 96.3 113 47.8
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 3.6e-18 95.5 122 47.5
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 3.6e-18 95.5 82 54.9
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 4.7e-18 95.1 73 60.3
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 6.1e-18 94.7 64 70.3
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 6.1e-18 94.7 114 45.6
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 6.1e-18 94.7 105 48.6
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 1.0e-17 94.0 119 49.6
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 1.0e-17 94.0 120 47.5
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 1.0e-17 94.0 125 44.8
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 2.3e-17 92.8 79 59.5
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 3.0e-17 92.4 124 41.1
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 3.0e-17 92.4 120 42.5
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 3.0e-17 92.4 125 45.6
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 3.9e-17 92.0 98 52.0
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 3.9e-17 92.0 80 58.8
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 5.2e-17 91.7 124 45.2
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 5.2e-17 91.7 106 48.1
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 5.2e-17 91.7 101 49.5
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 6.7e-17 91.3 62 66.1
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 6.7e-17 91.3 121 42.1
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 6.7e-17 91.3 104 48.1
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 8.8e-17 90.9 125 45.6
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.1e-16 90.5 113 45.1
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.1e-16 90.5 113 45.1
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 1.1e-16 90.5 89 52.8
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 1.5e-16 90.1 130 40.0
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 1.5e-16 90.1 121 46.3
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 1.5e-16 90.1 123 44.7
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 1.5e-16 90.1 118 46.6
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 1.5e-16 90.1 110 47.3
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 2.6e-16 89.4 123 43.9
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 2.6e-16 89.4 113 45.1
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 4.4e-16 88.6 127 44.1
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 4.4e-16 88.6 141 44.7
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 7.4e-16 87.8 82 54.9
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 9.7e-16 87.4 127 43.3
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.3e-15 87.0 80 55.0
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 1.7e-15 86.7 128 39.1
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.2e-15 86.3 80 55.0
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 2.2e-15 86.3 66 66.7
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 2.8e-15 85.9 116 44.0
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 3.7e-15 85.5 62 67.7
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 3.7e-15 85.5 86 53.5
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 3.7e-15 85.5 60 66.7
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 3.7e-15 85.5 127 42.5
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 4.8e-15 85.1 108 43.5
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 4.8e-15 85.1 119 43.7
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 4.8e-15 85.1 62 62.9
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.1e-14 84.0 109 47.7
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.4e-14 83.6 118 45.8
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 1.4e-14 83.6 51 74.5
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 1.4e-14 83.6 112 42.9
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 1.4e-14 83.6 95 47.4
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.8e-14 83.2 104 48.1
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 1.8e-14 83.2 113 47.8
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.8e-14 83.2 86 52.3
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 1.8e-14 83.2 138 42.0
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 2.4e-14 82.8 135 41.5
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 2.4e-14 82.8 137 40.9
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 3.1e-14 82.4 112 41.1
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 3.1e-14 82.4 62 58.1
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 5.3e-14 81.6 80 50.0
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 5.3e-14 81.6 56 58.9
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 1.6e-13 80.1 56 62.5
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 1.6e-13 80.1 68 57.4
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 2.0e-13 79.7 55 63.6
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.6e-13 79.3 120 41.7
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 2.6e-13 79.3 56 66.1
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 3.5e-13 79.0 57 68.4
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 3.5e-13 79.0 127 43.3
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 3.5e-13 79.0 88 51.1
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 4.5e-13 78.6 80 53.8
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 4.5e-13 78.6 64 54.7
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 5.9e-13 78.2 55 70.9
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 5.9e-13 78.2 66 56.1
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 5.9e-13 78.2 66 56.1
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 5.9e-13 78.2 90 44.4
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 1.0e-12 77.4 110 44.5
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 1.3e-12 77.0 53 64.2
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 1.3e-12 77.0 53 64.2
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 1.3e-12 77.0 53 64.2
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 1.3e-12 77.0 53 64.2
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.7e-12 76.6 53 66.0
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 2.2e-12 76.3 54 64.8
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 2.2e-12 76.3 55 63.6
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 2.2e-12 76.3 129 44.2
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 5.0e-12 75.1 55 63.6
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 5.0e-12 75.1 55 63.6
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 5.0e-12 75.1 55 63.6
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 5.0e-12 75.1 53 62.3
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 6.5e-12 74.7 54 63.0
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 6.5e-12 74.7 54 70.4
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.5e-12 74.7 99 42.4
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 8.5e-12 74.3 122 47.5
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 1.1e-11 73.9 52 65.4
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 1.1e-11 73.9 103 40.8
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 1.1e-11 73.9 102 41.2
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 1.5e-11 73.6 55 61.8
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 1.5e-11 73.6 53 62.3
Medtr7g092040 Medicago truncatula HOM05D031557 ORTHO05D030146 1.5e-11 73.6 93 48.4
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 1.9e-11 73.2 88 46.6
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 2.5e-11 72.8 98 43.9
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 2.5e-11 72.8 53 62.3
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 2.5e-11 72.8 55 61.8
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 2.5e-11 72.8 55 61.8
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 5.5e-11 71.6 53 62.3
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 5.5e-11 71.6 92 47.8
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 7.2e-11 71.2 55 61.8
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 7.2e-11 71.2 84 46.4
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 7.2e-11 71.2 67 52.2
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 9.4e-11 70.9 53 62.3
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.2e-10 70.5 50 66.0
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 1.2e-10 70.5 50 64.0
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 1.6e-10 70.1 73 43.8
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 2.1e-10 69.7 53 60.4
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 2.1e-10 69.7 130 40.0
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 2.7e-10 69.3 54 57.4
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 3.6e-10 68.9 116 38.8
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 3.6e-10 68.9 116 38.8
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 3.6e-10 68.9 116 38.8
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 3.6e-10 68.9 50 64.0
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 3.6e-10 68.9 85 44.7
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 4.7e-10 68.6 54 61.1
Atru.chr1.1053 Acer truncatum HOM05D003595 ORTHO05D004132 6.1e-10 68.2 69 52.2
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 6.1e-10 68.2 53 62.3
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 1.0e-09 67.4 49 61.2
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 1.0e-09 67.4 60 60.0
GSVIVG01033314001 Vitis vinifera HOM05D003595 ORTHO05D004132 1.0e-09 67.4 40 77.5
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.4e-09 67.0 58 55.2
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 1.8e-09 66.6 102 44.1
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 3.0e-09 65.9 116 37.1
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 3.0e-09 65.9 49 61.2
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 5.2e-09 65.1 83 44.6
Gohir.A11G311600 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.7e-09 64.7 109 36.7
Gohir.D11G328300 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.7e-09 64.7 109 35.8
Gorai.007G359500 Gossypium raimondii HOM05D003595 ORTHO05D004132 6.7e-09 64.7 109 35.8
Medtr7g091750 Medicago truncatula HOM05D031557 ORTHO05D030146 1.5e-08 63.5 90 46.7
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 2.0e-08 63.2 116 36.2
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 2.0e-08 63.2 116 36.2
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 2.0e-08 63.2 72 41.7
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 2.0e-08 63.2 72 41.7
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 2.6e-08 62.8 52 53.8
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 2.6e-08 62.8 52 53.8
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 4.4e-08 62.0 61 50.8
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 5.7e-08 61.6 115 39.1
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 1.3e-07 60.5 48 58.3
unitig_8.g2994 Utricularia gibba HOM05D003595 ORTHO05D004132 1.3e-07 60.5 57 54.4
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 2.2e-07 59.7 115 37.4
Aqoxy2G00199 Aquilegia oxysepala HOM05D003595 ORTHO05D004132 2.2e-07 59.7 92 39.1
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 4.8e-07 58.5 54 51.9
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 4.8e-07 58.5 54 51.9
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 6.3e-07 58.2 69 40.6
Lalb_Chr17g0349061 Lupinus albus HOM05D003595 ORTHO05D004132 6.3e-07 58.2 48 60.4
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 2.4e-06 56.2 61 45.9
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 5.3e-06 55.1 53 50.9
PGSC0003DMG400023720 Solanum tuberosum HOM05D003595 ORTHO05D049418 5.3e-06 55.1 74 44.6
TPR.G40525 Trifolium pratense HOM05D031557 ORTHO05D030146 9.1e-06 54.3 64 46.9


User provided reference genes

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