Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 1.3e-90 337.0 272 100.0
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 2.7e-67 259.6 191 84.8
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 2.6e-62 243.0 274 77.0
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 2.3e-55 219.9 188 68.6
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 9.8e-46 188.0 286 71.3
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 1.4e-44 184.1 294 69.7
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 6.0e-43 178.7 274 72.6
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 1.3e-42 177.6 286 72.7
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 5.1e-42 175.6 286 72.7
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 1.5e-41 174.1 287 67.2
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 4.7e-40 169.1 275 67.3
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 4.0e-39 166.0 273 65.6
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 8.9e-39 164.9 285 65.6
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 1.5e-38 164.1 280 55.7
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 2.0e-38 163.7 279 64.2
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 2.6e-38 163.3 280 63.2
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 3.4e-38 162.9 271 64.2
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 5.8e-38 162.2 271 63.5
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 5.8e-38 162.2 267 68.5
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 7.6e-38 161.8 285 69.8
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 7.6e-38 161.8 285 69.8
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 9.9e-38 161.4 287 67.9
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 9.9e-38 161.4 287 68.3
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 3.8e-37 159.5 281 61.6
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 6.4e-37 158.7 286 69.9
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 8.4e-37 158.3 275 65.8
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 1.4e-36 157.5 276 60.5
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 1.4e-36 157.5 286 68.9
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.9e-36 157.1 287 67.9
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 1.9e-36 157.1 192 53.1
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 4.1e-36 156.0 272 62.5
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 5.4e-36 155.6 279 60.6
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 5.4e-36 155.6 279 60.6
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 7.1e-36 155.2 291 60.8
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 7.1e-36 155.2 193 57.5
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 1.2e-35 154.5 251 76.5
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 2.1e-35 153.7 262 61.5
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 2.1e-35 153.7 289 61.6
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 2.1e-35 153.7 287 61.3
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 6.0e-35 152.1 287 62.0
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 6.0e-35 152.1 265 66.0
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 6.0e-35 152.1 270 65.9
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 6.6e-34 148.7 281 61.9
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 1.1e-33 147.9 269 69.9
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 1.5e-33 147.5 300 58.3
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 1.9e-33 147.1 277 63.5
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.9e-33 147.1 280 62.5
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 4.3e-33 146.0 285 60.4
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 5.6e-33 145.6 278 62.2
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 2.1e-32 143.7 181 59.1
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 2.8e-32 143.3 276 62.0
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 3.6e-32 142.9 268 52.6
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 3.6e-32 142.9 285 63.2
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 3.6e-32 142.9 253 64.0
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 4.7e-32 142.5 266 64.7
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 4.7e-32 142.5 266 67.3
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 1.4e-31 141.0 182 56.6
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.4e-31 141.0 278 60.4
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.4e-31 141.0 249 68.3
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.8e-31 140.6 288 64.9
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 3.1e-31 139.8 270 67.4
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 5.2e-31 139.0 269 61.0
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 6.9e-31 138.7 238 66.0
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 2.6e-30 136.7 277 50.5
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 3.4e-30 136.3 317 57.1
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 4.4e-30 136.0 273 62.6
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 4.4e-30 136.0 264 68.9
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 5.8e-30 135.6 285 59.6
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 5.8e-30 135.6 182 51.6
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 7.6e-30 135.2 296 65.2
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 9.9e-30 134.8 301 59.1
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 9.9e-30 134.8 267 62.5
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 9.9e-30 134.8 267 62.5
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 1.3e-29 134.4 288 58.3
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.3e-29 134.4 286 57.7
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.3e-29 134.4 283 62.9
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.3e-29 134.4 267 67.4
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.7e-29 134.0 281 62.6
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 4.9e-29 132.5 285 59.6
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 6.4e-29 132.1 276 63.4
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 1.1e-28 131.3 269 64.3
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 1.1e-28 131.3 291 60.5
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 1.4e-28 131.0 185 48.6
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 1.4e-28 131.0 186 52.2
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.9e-28 130.6 273 59.3
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 1.9e-28 130.6 281 62.6
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 4.2e-28 129.4 265 61.9
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 7.1e-28 128.6 176 51.7
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 7.1e-28 128.6 272 61.4
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 4.6e-27 125.9 286 58.0
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 4.6e-27 125.9 269 60.6
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 4.6e-27 125.9 269 60.6
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 6.0e-27 125.6 228 73.2
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 1.0e-26 124.8 278 57.2
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 1.0e-26 124.8 239 63.2
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 5.1e-26 122.5 273 61.9
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 6.6e-26 122.1 269 59.9
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 8.7e-26 121.7 191 45.0
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 1.1e-25 121.3 276 51.4
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.5e-25 120.2 264 56.4
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 1.6e-24 117.5 266 65.8
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 6.2e-24 115.5 253 61.7
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 8.1e-24 115.2 310 53.5
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.4e-23 114.4 274 60.6
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.8e-23 114.0 284 51.4
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 2.4e-23 113.6 269 57.6
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 3.1e-23 113.2 256 55.9
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 3.1e-23 113.2 272 57.7
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 3.1e-23 113.2 180 46.1
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 6.9e-23 112.1 290 62.4
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 7.6e-22 108.6 270 55.6
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 7.6e-22 108.6 287 54.7
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.7e-21 107.5 290 55.5
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 2.2e-21 107.1 301 57.1
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 3.8e-21 106.3 257 45.5
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 3.8e-21 106.3 257 45.5
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 3.8e-21 106.3 152 48.7
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 6.4e-21 105.5 287 61.7
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 1.1e-20 104.8 257 53.7
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 1.9e-20 104.0 264 56.8
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 2.4e-20 103.6 272 51.5
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 2.4e-20 103.6 260 46.2
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 3.2e-20 103.2 281 55.2
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 4.2e-20 102.8 268 57.1
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 4.2e-20 102.8 278 57.2
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 5.4e-20 102.4 294 55.4
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 5.4e-20 102.4 277 56.0
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 7.1e-20 102.1 271 56.1
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 9.3e-20 101.7 295 56.6
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 9.3e-20 101.7 127 59.8
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 9.3e-20 101.7 174 40.8
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.2e-19 101.3 276 55.4
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 1.6e-19 100.9 189 43.4
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 1.6e-19 100.9 292 53.8
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 2.1e-19 100.5 289 56.1
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 2.1e-19 100.5 265 60.8
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 6.0e-19 99.0 213 38.0
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 7.9e-19 98.6 226 44.7
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 7.9e-19 98.6 285 54.4
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 7.9e-19 98.6 285 54.4
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 7.9e-19 98.6 285 54.4
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.3e-18 97.1 164 76.2
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 2.3e-18 97.1 278 57.6
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 3.0e-18 96.7 254 31.9
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 3.0e-18 96.7 284 56.0
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 8.7e-18 95.1 222 38.3
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 1.5e-17 94.4 263 45.6
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 3.3e-17 93.2 272 58.1
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 5.6e-17 92.4 129 62.8
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 9.6e-17 91.7 266 50.8
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 9.6e-17 91.7 170 42.4
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 1.3e-16 91.3 282 40.1
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 1.8e-15 87.4 262 42.4
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 1.2e-14 84.7 194 39.2
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 3.8e-13 79.7 264 52.7
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 4.9e-13 79.3 259 60.2
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 2.4e-12 77.0 287 41.1
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 7.1e-12 75.5 174 36.8
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 5.6e-09 65.9 249 33.3
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 3.7e-08 63.2 35 88.6
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 6.2e-08 62.4 277 46.9
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 1.8e-07 60.8 136 44.9
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 2.4e-07 60.5 186 30.1
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 1.5e-06 57.8 66 56.1
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 2.6e-06 57.0 35 80.0
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 3.4e-06 56.6 66 56.1
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 3.4e-06 56.6 83 51.8


User provided reference genes

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