Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2739.1 1384 100.0
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2698.3 1385 98.3
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2684.4 1384 97.6
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2654.0 1384 96.2
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2601.2 1385 93.8
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2600.5 1388 94.1
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2597.8 1388 94.1
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2597.8 1384 93.7
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2587.0 1386 93.1
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2580.4 1384 92.5
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2577.4 1382 92.5
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2568.9 1384 92.8
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2567.7 1384 92.6
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2563.5 1384 92.1
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2560.8 1384 92.3
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2550.8 1387 91.4
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2550.8 1384 91.6
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2549.6 1386 91.4
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2548.1 1384 91.4
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2544.6 1384 92.2
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2542.3 1384 91.8
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2539.6 1384 90.8
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2539.2 1384 91.0
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2537.7 1383 91.4
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2536.1 1385 91.8
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2534.6 1384 91.0
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2533.8 1384 91.1
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2533.4 1384 91.5
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2532.3 1384 91.2
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2529.6 1384 91.3
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2529.2 1384 91.0
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2528.8 1384 91.0
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2527.3 1399 90.5
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2525.0 1384 91.5
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2522.3 1384 91.6
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2522.3 1384 90.4
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2519.2 1384 90.8
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2518.8 1384 90.8
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2518.4 1384 90.8
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2518.0 1384 90.2
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2513.4 1399 89.9
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2513.0 1384 90.4
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2511.5 1384 90.0
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2504.2 1384 89.9
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2503.4 1386 89.9
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2502.2 1384 89.9
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2502.2 1384 90.1
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2501.5 1385 89.6
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2493.8 1384 89.8
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2490.7 1384 90.9
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2486.4 1384 89.1
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2485.7 1384 89.2
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2484.9 1384 89.1
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2484.9 1384 89.1
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2484.1 1384 89.4
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2484.1 1384 89.2
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2483.0 1384 88.9
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2482.2 1384 89.5
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2480.7 1384 88.7
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2480.3 1384 89.2
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2479.5 1384 88.6
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2479.5 1384 89.6
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2479.1 1385 88.5
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2477.6 1386 88.0
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2477.2 1385 88.7
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2477.2 1385 89.2
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2476.4 1385 89.2
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2471.0 1411 87.3
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2471.0 1395 88.2
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2460.3 1385 87.8
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2457.9 1336 91.2
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2450.2 1386 87.6
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2449.5 1446 84.3
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2444.5 1385 87.1
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2443.3 1385 87.1
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2436.8 1384 88.2
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2435.6 1385 88.0
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2434.1 1384 87.1
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2432.9 1384 87.1
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2430.6 1383 87.3
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2429.4 1384 87.2
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2427.5 1384 87.0
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2414.4 1384 86.3
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2412.5 1384 86.3
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2408.6 1385 87.1
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2406.3 1385 86.6
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2406.3 1385 86.6
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2404.0 1356 87.8
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2403.6 1384 86.4
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2403.6 1384 86.4
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2403.6 1384 86.4
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2380.5 1385 85.5
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2374.4 1387 85.7
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2370.1 1384 86.0
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2359.7 1384 85.2
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2339.7 1409 84.2
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2337.8 1404 82.8
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2310.0 1259 92.1
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2303.5 1260 91.2
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2301.6 1332 84.5
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2276.1 1347 85.3
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2250.3 1263 89.8
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2196.0 1334 80.7
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2189.8 1353 78.7
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2189.5 1340 79.9
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2177.1 1344 79.5
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2177.1 1344 79.5
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2161.3 1369 77.1
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1993.8 1382 75.8
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1993.4 1121 88.3
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1970.7 1109 88.4
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1935.2 1402 74.1
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1883.6 1333 69.7
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1873.2 1348 68.7
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1703.3 914 92.0
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1697.6 913 92.1
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1632.5 898 90.1
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1506.9 809 91.8
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1501.9 808 91.8
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1162.9 690 85.1
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1126.7 676 83.3
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 2.1e-309 1066.2 670 81.0
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 2.7e-301 1039.3 571 88.1
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 9.2e-265 917.9 1199 44.2
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 3.5e-264 916.0 588 79.6
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 4.3e-238 829.3 472 87.9
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 5.2e-236 822.4 472 86.9
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.3e-234 817.8 472 86.2
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 2.7e-216 756.9 472 81.4
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 1.2e-208 731.5 398 89.4
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 4.4e-174 616.7 1375 32.1
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 6.8e-159 566.2 1489 29.9
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 1.4e-108 399.1 1277 27.5
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 7.9e-91 340.1 175 96.0
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 1.6e-67 262.7 147 85.7
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 1.1e-60 240.0 123 94.3
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 1.6e-46 193.0 107 91.6
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 2.1e-43 182.6 174 57.5
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 3.2e-31 142.1 139 51.8
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 3.3e-28 132.1 99 68.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 2.0e-25 122.9 91 68.1
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 4.3e-20 105.1 61 83.6


User provided reference genes

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