Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 2.0e-218 762.3 421 100.0
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 9.2e-176 620.5 402 85.8
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 1.7e-137 493.4 348 75.6
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 4.9e-129 465.3 321 76.6
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 4.8e-124 448.7 434 62.4
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 3.4e-114 416.0 479 53.7
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 3.8e-113 412.5 484 52.7
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 9.4e-112 407.9 441 54.0
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 1.9e-104 383.6 461 51.4
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 1.9e-104 383.6 443 54.2
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 1.2e-103 380.9 458 50.7
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 1.4e-102 377.5 356 61.0
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 4.1e-99 365.9 468 49.1
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 3.8e-97 359.4 337 60.8
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 3.3e-93 346.3 458 47.2
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 1.0e-89 334.7 485 44.7
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 1.7e-89 334.0 458 46.7
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 1.7e-89 334.0 428 47.7
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 6.5e-89 332.0 302 60.9
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 1.5e-88 330.9 479 44.3
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 2.5e-88 330.1 502 43.6
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 2.5e-88 330.1 503 43.7
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 4.2e-88 329.3 449 46.8
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 4.2e-88 329.3 488 45.1
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 5.5e-88 328.9 475 45.7
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 7.2e-88 328.6 458 46.7
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 1.2e-87 327.8 424 48.8
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 2.1e-87 327.0 493 44.0
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 2.1e-87 327.0 435 46.2
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 6.1e-87 325.5 481 43.7
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 3.0e-86 323.2 490 43.5
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 5.2e-86 322.4 463 45.6
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 5.2e-86 322.4 457 45.3
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 5.2e-86 322.4 456 44.3
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 5.2e-86 322.4 457 45.1
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 4.4e-85 319.3 456 44.3
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 5.7e-85 318.9 462 45.0
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 5.7e-85 318.9 470 44.5
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 9.8e-85 318.2 457 44.0
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 3.7e-84 316.2 487 43.3
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 4.8e-84 315.8 473 43.6
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 6.3e-84 315.5 426 47.4
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 8.3e-84 315.1 423 46.8
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 1.1e-83 314.7 473 44.6
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 2.4e-83 313.5 489 44.2
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 2.4e-83 313.5 470 44.9
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 3.1e-83 313.2 462 44.8
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 5.4e-83 312.4 426 45.8
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 5.4e-83 312.4 486 44.0
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 5.4e-83 312.4 329 55.0
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 1.2e-82 311.2 367 48.2
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.6e-82 310.8 514 42.2
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 4.5e-82 309.3 467 45.0
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.3e-81 307.8 445 43.6
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 1.7e-81 307.4 363 49.6
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 1.7e-81 307.4 455 43.7
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 2.9e-81 306.6 425 45.4
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.9e-81 306.6 476 43.3
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 8.6e-81 305.1 440 46.4
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 1.5e-80 304.3 427 45.4
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 1.5e-80 304.3 362 49.4
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 1.9e-80 303.9 463 43.0
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 3.3e-80 303.1 449 45.7
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 4.2e-80 302.8 360 49.4
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 4.2e-80 302.8 441 44.0
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.6e-79 300.8 358 48.3
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 4.7e-79 299.3 439 43.7
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.0e-78 298.1 510 40.8
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 1.4e-78 297.7 469 41.6
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 1.8e-78 297.4 406 46.8
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 4.0e-78 296.2 359 48.7
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 4.0e-78 296.2 466 43.6
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 5.2e-78 295.8 446 45.3
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 8.9e-78 295.0 463 41.5
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 1.5e-77 294.3 453 42.6
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 2.0e-77 293.9 423 44.7
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 5.7e-77 292.4 357 48.2
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.2e-76 290.4 439 43.5
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 3.7e-76 289.7 479 40.7
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 4.9e-76 289.3 418 44.0
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 4.9e-76 289.3 429 45.0
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.4e-75 287.7 418 43.8
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 2.4e-75 287.0 416 44.5
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 2.4e-75 287.0 416 44.5
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 2.4e-75 287.0 416 44.5
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 5.4e-75 285.8 444 41.4
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 9.2e-75 285.0 418 44.0
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 1.2e-74 284.6 349 48.4
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 1.2e-74 284.6 419 42.5
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 2.0e-74 283.9 364 48.6
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 2.7e-74 283.5 362 48.9
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 3.5e-74 283.1 385 44.4
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 7.8e-74 282.0 494 40.3
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 1.3e-73 281.2 448 42.2
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 3.8e-73 279.6 382 48.2
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 6.6e-73 278.9 433 41.3
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 2.5e-72 276.9 379 45.6
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 2.5e-72 276.9 379 45.6
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 2.5e-72 276.9 379 45.6
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 2.5e-72 276.9 370 44.3
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 5.6e-72 275.8 458 40.2
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 9.5e-72 275.0 369 45.8
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.2e-71 274.6 357 46.8
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 2.1e-71 273.9 462 40.3
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 8.0e-71 271.9 421 43.9
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 1.0e-70 271.6 370 43.8
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.3e-70 270.4 464 40.7
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 6.8e-70 268.9 421 43.5
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.5e-69 267.7 530 38.7
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 2.2e-68 263.8 417 42.9
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 2.9e-68 263.5 465 38.7
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 3.7e-68 263.1 452 42.0
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 3.7e-68 263.1 452 42.0
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 6.4e-68 262.3 426 40.8
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 6.4e-68 262.3 417 42.7
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 4.1e-67 259.6 477 38.2
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 7.0e-67 258.8 463 40.4
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 4.6e-66 256.1 468 38.7
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 1.1e-64 251.5 436 38.3
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 1.9e-64 250.8 450 40.9
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 2.5e-64 250.4 358 44.4
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 1.2e-63 248.1 480 37.9
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 1.2e-63 248.1 309 45.6
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.2e-63 248.1 450 39.6
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 4.7e-63 246.1 369 42.3
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 6.2e-63 245.7 388 41.2
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.4e-61 239.6 366 40.7
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 7.5e-61 238.8 397 38.5
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 2.1e-58 230.7 374 41.7
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 6.0e-58 229.2 375 41.1
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 3.1e-54 216.9 429 37.8
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 8.3e-52 208.8 390 36.4
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.1e-51 208.4 386 35.0
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.1e-51 208.4 320 40.0
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 1.1e-51 208.4 491 33.4
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 2.7e-50 203.8 222 53.6
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 3.0e-49 200.3 260 46.5
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 1.9e-48 197.6 483 33.3
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 6.2e-47 192.6 299 42.1
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 6.2e-39 166.0 167 53.3
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.4e-38 164.9 167 55.1
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 3.4e-37 160.2 525 28.0
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 3.4e-37 160.2 525 28.0
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 8.1e-31 139.0 434 27.0
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.5e-29 133.3 411 27.3
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.1e-27 128.6 284 32.0
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.2e-27 127.1 217 36.9
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.2e-27 126.7 411 28.7
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.9e-25 120.2 286 31.5
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 2.8e-23 114.0 220 31.8
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 6.2e-23 112.8 538 24.3
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 6.9e-22 109.4 206 35.0
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 4.9e-20 103.2 255 30.2
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 2.5e-19 100.9 486 25.1
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 3.3e-16 90.5 183 38.3
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 7.4e-16 89.4 121 38.0
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.6e-15 88.2 94 44.7
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 2.1e-10 71.2 62 62.9
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.0e-09 68.9 81 42.0
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 5.7e-08 63.2 151 33.1
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.8e-07 60.1 59 42.4
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 2.4e-06 57.8 85 40.0


User provided reference genes

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