Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G136200 Glycine max HOM05D007911 ORTHO05D009536 0.0e+00 1476.8 764 100.0
Glyma.03G133900 Glycine max HOM05D007911 ORTHO05D009536 0.0e+00 1237.2 793 84.4
Phvul.001G129400 Phaseolus vulgaris HOM05D007911 ORTHO05D009536 1.2e-176 624.4 798 49.9
VMungo1383G2470 Vigna mungo HOM05D007911 ORTHO05D009536 3.4e-168 596.3 801 48.6
Lj1g0009156 Lotus japonicus HOM05D007911 ORTHO05D009536 5.3e-121 439.5 845 38.9
TPR.G18258 Trifolium pratense HOM05D007911 ORTHO05D009536 3.7e-98 363.6 922 34.7
arahy.Tifrunner.gnm1.ann1.18RKPD Arachis hypogaea HOM05D007911 ORTHO05D009536 3.0e-92 344.0 842 36.0
arahy.Tifrunner.gnm1.ann1.BL1IZ1 Arachis hypogaea HOM05D007911 ORTHO05D009536 6.7e-92 342.8 843 35.5
Lalb_Chr01g0017411 Lupinus albus HOM05D007911 ORTHO05D009536 4.1e-81 307.0 801 34.2
Psat3g074440 Pisum sativum HOM05D007911 ORTHO05D009536 8.3e-74 282.7 977 29.8
Medtr2g012890 Medicago truncatula HOM05D007911 ORTHO05D009536 3.0e-68 264.2 768 33.1
Ca_08429_v3 Cicer arietinum L. HOM05D007911 ORTHO05D009536 9.8e-59 232.6 834 28.7
CiPaw.09G040100 Carya illinoinensis HOM05D007911 ORTHO05D009536 2.7e-48 198.0 825 28.7
Cfa016782 Carpinus fangiana HOM05D007911 ORTHO05D009536 5.6e-46 190.3 867 27.9
Lalb_Chr25g0287291 Lupinus albus HOM05D007911 ORTHO05D009536 6.8e-44 183.3 213 53.5
Lalb_Chr25g0287301 Lupinus albus HOM05D007911 ORTHO05D009536 1.5e-38 165.6 523 31.4
Duzib093G1996 Durio zibethinus HOM05D007911 ORTHO05D009536 8.1e-37 159.8 811 27.7
Cpa.g.sc1210.2 Carica papaya HOM05D007911 ORTHO05D009536 8.9e-36 156.4 809 26.2
Potri.016G043300 Populus trichocarpa HOM05D007911 ORTHO05D009536 3.4e-35 154.5 831 26.2
VMungo0720G0307 Vigna mungo HOM05D007911 ORTHO05D009536 7.5e-35 153.3 100 77.0
Manes.08G052400 Manihot esculenta HOM05D007911 ORTHO05D009536 1.2e-32 146.0 779 25.5
Thecc.05G151800 Theobroma cacao HOM05D007911 ORTHO05D009536 2.7e-32 144.8 817 26.4
QL07p003623 Quercus lobata HOM05D007911 ORTHO05D009536 5.1e-31 140.6 1101 24.9
Gohir.A01G130811 Gossypium hirsutum HOM05D007911 ORTHO05D009536 2.5e-30 138.3 836 25.1
Haze_19798 Corylus avellana HOM05D007911 ORTHO05D009536 1.2e-29 136.0 830 25.3
Gohir.D01G119650 Gossypium hirsutum HOM05D007911 ORTHO05D009536 2.1e-29 135.2 828 25.8
arahy.Tifrunner.gnm1.ann1.XA9LH2 Arachis hypogaea HOM05D007911 ORTHO05D009536 1.4e-28 132.5 97 71.1
Sabra06G0032200 Salix brachista HOM05D007911 ORTHO05D009536 2.0e-27 128.6 810 25.9
COL.COLO4_33204 Corchorus olitorius HOM05D007911 ORTHO05D009536 5.8e-27 127.1 829 25.0
Medtr7g091040 Medicago truncatula HOM05D007911 ORTHO05D009536 5.8e-27 127.1 132 53.0
Gorai.002G146100 Gossypium raimondii HOM05D007911 ORTHO05D009536 1.3e-26 125.9 838 25.4
TWI77G0280 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 4.9e-26 124.0 498 27.9
Potri.006G046700 Populus trichocarpa HOM05D007911 ORTHO05D009536 5.4e-25 120.6 812 24.5
TWI53G0905 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 1.2e-24 119.4 320 31.9
CANSAT80G1261 Cannabis sativa HOM05D007911 ORTHO05D009536 1.7e-23 115.5 212 34.0
CANSAT80G2434 Cannabis sativa HOM05D007911 ORTHO05D009536 4.3e-22 110.9 214 34.1
Atru.chr1.1239 Acer truncatum HOM05D007911 ORTHO05D009536 7.3e-22 110.2 101 57.4
Prupe.7G054000 Prunus persica HOM05D007911 ORTHO05D009536 7.3e-22 110.2 228 32.5
Duzib106G0073 Durio zibethinus HOM05D007911 ORTHO05D009536 4.8e-21 107.5 130 46.9
Ciclev10006879m.g Citrus clementina HOM05D007911 ORTHO05D009536 1.8e-20 105.5 103 50.5
Actinidia39204 Actinidia chinensis HOM05D007911 ORTHO05D009536 2.4e-20 105.1 348 29.6
Atru.chr12.1999 Acer truncatum HOM05D007911 ORTHO05D009536 2.0e-19 102.1 101 54.5
FvH4_6g24470 Fragaria vesca HOM05D020102 ORTHO05D009536 9.9e-19 99.8 162 35.2
FAN09G4584 Fragaria x ananassa HOM05D020102 ORTHO05D009536 2.9e-18 98.2 162 34.0
RcHm_v2.0_Chr3g0483481 Rosa chinensis HOM05D020102 ORTHO05D009536 3.8e-18 97.8 762 24.1
CSS0030068 Camellia sinensis var. sinensis HOM05D007911 ORTHO05D009536 8.4e-18 96.7 106 50.9
FAN14G4000 Fragaria x ananassa HOM05D020102 ORTHO05D009536 8.4e-18 96.7 162 34.0
Hma1.2p1_0005F.1_g004500 Hydrangea macrophylla HOM05D007911 ORTHO05D009536 8.4e-18 96.7 196 36.2
Actinidia09304 Actinidia chinensis HOM05D007911 ORTHO05D009536 1.1e-17 96.3 352 29.0
Peaxi162Scf00130g00827 Petunia axillaris HOM05D017238 ORTHO05D009536 1.1e-17 96.3 98 48.0
Nitab4.5_0000826g0230 Nicotiana tabacum HOM05D017238 ORTHO05D009536 1.4e-17 95.9 128 42.2
CAN.G676.9 Capsicum annuum HOM05D017238 ORTHO05D009536 1.6e-16 92.4 118 45.8
TAR636G2018 Trochodendron aralioides HOM05D007911 ORTHO05D009536 1.6e-16 92.4 212 34.4
Nitab4.5_0001618g0290 Nicotiana tabacum HOM05D017238 ORTHO05D009536 2.1e-16 92.0 143 39.2
Eucgr.A02312 Eucalyptus grandis HOM05D007911 ORTHO05D009536 1.7e-15 89.0 436 25.0
PGR004G0024 Punica granatum HOM05D007911 ORTHO05D009536 3.0e-15 88.2 185 35.1
arahy.Tifrunner.gnm1.ann1.808QWK Arachis hypogaea HOM05D007911 ORTHO05D009536 5.1e-15 87.4 109 49.5
Oeu035501.1 Olea europaea HOM05D007911 ORTHO05D009536 6.6e-15 87.0 119 41.2
Sopen04g008390 Solanum pennellii HOM05D017238 ORTHO05D009536 1.9e-14 85.5 203 32.5
Solyc04g016290.3 Solanum lycopersicum HOM05D017238 ORTHO05D009536 4.3e-14 84.3 203 32.0
FAN05G5247 Fragaria x ananassa HOM05D020102 ORTHO05D009536 1.3e-13 82.8 111 38.7
Rhsim03G0028700 Rhododendron simsii HOM05D007911 ORTHO05D009536 1.3e-13 82.8 106 46.2
Aqoxy1G00297 Aquilegia oxysepala HOM05D007911 ORTHO05D009536 2.1e-13 82.0 110 44.5
PSO339G2888 Papaver somniferum HOM05D007911 ORTHO05D009536 3.6e-13 81.3 113 41.6
vmacro21970 Vaccinium macrocarpon HOM05D007911 ORTHO05D009536 1.1e-12 79.7 101 45.5
Cc06_g17980 Coffea canephora HOM05D007911 ORTHO05D009536 1.2e-11 76.3 94 41.5
Nn2g15134 Nelumbo nucifera HOM05D007911 ORTHO05D009536 1.2e-11 76.3 138 35.5
MSTRG.6410 Avicennia marina HOM05D007911 ORTHO05D009536 5.8e-11 73.9 180 30.0
SGA_v2.0_scaffold105G30375 Striga asiatica HOM05D007911 ORTHO05D009536 7.6e-11 73.6 113 35.4
Nitab4.5_0000677g0260 Nicotiana tabacum HOM05D029882 ORTHO05D009536 1.3e-10 72.8 82 48.8
SalBow6G0990 Salvia bowleyana HOM05D007911 ORTHO05D009536 1.7e-10 72.4 158 33.5
SalBow6G1456 Salvia bowleyana HOM05D007911 ORTHO05D009536 1.7e-10 72.4 158 33.5
PSO384G4398 Papaver somniferum HOM05D007911 ORTHO05D009536 2.2e-10 72.0 113 39.8
SGA_v2.0_scaffold69G23124 Striga asiatica HOM05D007911 ORTHO05D009536 2.9e-10 71.6 131 32.1
ClCG04G003660 Citrullus lanatus HOM05D007911 ORTHO05D009536 3.8e-10 71.2 99 40.4
MELO3C026340.2 Cucumis melo HOM05D007911 ORTHO05D009536 2.4e-09 68.6 99 39.4
Lsat_1_v5_gn_9_31060 Lactuca sativa HOM05D007911 ORTHO05D009536 4.6e-08 64.3 181 32.6
HanXRQChr08g0234551 Helianthus annuus HOM05D007911 ORTHO05D009536 6.0e-08 63.9 168 32.1
EL10Ac3g07134 Beta vulgaris HOM05D021336 ORTHO05D009536 1.8e-07 62.4 175 28.6
Sc13g0001600 Simmondsia chinensis HOM05D007911 ORTHO05D009536 3.9e-07 61.2 126 36.5
ECA247G2582 Erigeron canadensis HOM05D007911 ORTHO05D009536 5.1e-07 60.8 102 37.3
Sed0016742 Sechium edule HOM05D007911 ORTHO05D009536 6.7e-07 60.5 91 38.5
Nitab4.5_0000677g0220 Nicotiana tabacum HOM05D017238 ORTHO05D009536 1.5e-06 59.3 120 33.3
Hund24682 Selenicereus undatus HOM05D007911 ORTHO05D009536 1.5e-06 59.3 106 35.8
AUR62024506 Chenopodium quinoa HOM05D021336 ORTHO05D009536 1.9e-06 58.9 157 29.9
AUR62026093 Chenopodium quinoa HOM05D021336 ORTHO05D009536 7.4e-06 57.0 161 28.0


User provided reference genes

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