Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 2.7e-158 562.0 294 100.0
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 5.9e-153 544.3 294 96.6
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 5.3e-146 521.2 296 91.9
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 1.7e-144 516.2 297 91.2
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 8.5e-144 513.8 294 89.8
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 5.1e-141 504.6 294 88.4
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 6.3e-139 497.7 294 87.8
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 9.4e-135 483.8 324 78.7
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 9.4e-135 483.8 294 85.4
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 3.8e-128 461.8 294 81.0
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 5.0e-128 461.5 295 81.4
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 3.2e-127 458.8 295 79.7
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 1.6e-126 456.4 294 81.3
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 4.7e-126 454.9 295 79.7
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 1.8e-125 453.0 294 78.9
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 2.3e-125 452.6 294 78.9
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 3.0e-125 452.2 294 80.3
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 1.1e-124 450.3 294 79.9
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 2.6e-124 449.1 295 78.6
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 3.3e-124 448.7 294 79.6
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 5.7e-124 448.0 294 77.2
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 2.2e-123 446.0 294 78.2
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 2.8e-123 445.7 294 78.6
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 1.1e-122 443.7 294 76.2
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 1.1e-122 443.7 295 76.9
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 1.1e-122 443.7 294 79.3
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.8e-122 443.0 321 73.8
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 2.4e-122 442.6 295 76.6
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 4.1e-122 441.8 295 76.6
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 4.1e-122 441.8 295 76.6
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 5.3e-122 441.4 291 77.0
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 5.3e-122 441.4 294 78.2
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 1.2e-121 440.3 292 79.1
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 1.6e-121 439.9 295 76.3
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 2.7e-121 439.1 295 78.0
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.3e-120 436.8 295 75.3
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.3e-120 436.8 295 75.3
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 2.2e-120 436.0 294 75.5
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 5.0e-120 434.9 294 78.2
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 8.5e-120 434.1 294 74.8
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 1.5e-119 433.3 294 75.2
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.5e-119 433.3 294 74.8
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 5.5e-119 431.4 295 75.6
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 5.5e-119 431.4 294 75.2
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 9.4e-119 430.6 294 74.8
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.2e-118 430.3 294 74.8
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 2.1e-118 429.5 298 76.5
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 4.7e-118 428.3 327 70.6
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 4.7e-118 428.3 295 76.3
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 6.1e-118 427.9 294 75.2
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 8.0e-118 427.6 294 74.8
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 2.3e-117 426.0 295 74.6
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 2.0e-116 422.9 295 74.2
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 2.0e-116 422.9 294 73.8
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 2.0e-116 422.9 294 75.2
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 2.6e-116 422.5 295 72.2
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 5.7e-116 421.4 306 72.5
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 5.7e-116 421.4 306 72.5
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 5.7e-116 421.4 298 74.8
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 7.5e-116 421.0 294 72.1
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 2.8e-115 419.1 306 72.2
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 2.4e-114 416.0 295 71.9
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 1.3e-112 410.2 329 69.0
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 1.7e-112 409.8 294 72.4
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 2.9e-112 409.1 293 72.7
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 8.5e-112 407.5 294 72.1
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 3.2e-111 405.6 295 70.2
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 5.5e-111 404.8 305 70.5
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 5.5e-111 404.8 294 70.1
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 7.2e-111 404.4 294 70.7
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 1.6e-110 403.3 295 71.2
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 2.7e-110 402.5 292 71.6
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 2.7e-110 402.5 295 69.8
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 6.1e-110 401.4 291 71.1
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 2.3e-109 399.4 298 69.1
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 3.0e-109 399.1 297 70.7
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 3.0e-109 399.1 294 68.4
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 1.2e-108 397.1 295 68.8
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 2.0e-108 396.4 296 70.9
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 7.5e-108 394.4 299 70.6
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 9.8e-108 394.0 317 65.3
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.1e-106 390.6 321 65.1
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 1.8e-106 389.8 294 70.1
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 4.1e-106 388.7 295 70.5
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 1.6e-105 386.7 352 58.2
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 2.7e-105 386.0 294 68.0
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 2.7e-105 386.0 295 68.1
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 7.7e-105 384.4 296 67.6
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 1.0e-104 384.0 273 72.2
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.7e-104 383.3 294 69.0
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 2.9e-104 382.5 287 70.4
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 3.8e-104 382.1 294 69.0
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 1.9e-103 379.8 298 67.4
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 3.6e-102 375.6 294 67.0
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.0e-101 374.0 295 68.1
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 2.3e-101 372.9 299 66.9
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 6.8e-101 371.3 297 64.3
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 1.2e-100 370.5 294 67.7
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 2.0e-100 369.8 296 63.2
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 3.7e-99 365.5 310 63.5
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 6.4e-99 364.8 313 65.8
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 8.3e-99 364.4 340 60.3
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.8e-98 363.2 294 65.6
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 1.2e-97 360.5 289 66.8
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.6e-97 360.1 239 77.8
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 2.7e-97 359.4 290 66.9
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 5.0e-96 355.1 286 66.1
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 5.6e-95 351.7 277 69.0
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 5.6e-95 351.7 294 62.6
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 7.3e-95 351.3 295 62.7
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 3.6e-94 349.0 239 74.5
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 3.1e-93 345.9 196 89.3
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 9.8e-92 340.9 295 62.0
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 2.9e-91 339.3 301 61.5
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 6.4e-91 338.2 238 68.9
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 4.6e-89 332.0 239 71.1
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 1.0e-88 330.9 296 62.2
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 3.0e-88 329.3 206 83.5
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 5.0e-88 328.6 294 61.9
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 2.6e-84 316.2 205 79.5
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 5.8e-84 315.1 294 59.2
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 8.3e-83 311.2 295 61.4
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 2.7e-81 306.2 309 54.7
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 1.0e-80 304.3 294 58.5
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 7.3e-79 298.1 254 63.0
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 9.5e-79 297.7 280 63.9
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 3.1e-77 292.7 295 53.2
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 8.9e-77 291.2 308 54.5
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 2.9e-75 286.2 295 55.6
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 3.2e-74 282.7 217 70.5
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 1.7e-72 276.9 249 57.8
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 3.0e-72 276.2 271 54.6
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 1.1e-69 267.7 205 65.9
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 1.7e-67 260.4 369 44.2
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 2.9e-67 259.6 208 64.9
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 7.1e-66 255.0 288 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 8.7e-64 248.1 234 54.7
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 1.5e-63 247.3 290 51.0
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 1.1e-61 241.1 330 47.0
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 9.9e-60 234.6 197 61.4
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 3.2e-58 229.6 317 42.3
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 1.8e-53 213.8 179 65.4
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 3.1e-53 213.0 333 40.5
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 1.8e-45 187.2 123 77.2
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 2.1e-38 163.7 101 81.2
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 3.7e-38 162.9 338 34.6
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 5.1e-32 142.5 90 77.8
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 9.1e-29 131.7 82 80.5
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 3.8e-27 126.3 79 70.9
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 1.4e-24 117.9 311 31.8
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 5.9e-20 102.4 232 33.6
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 1.3e-19 101.3 100 58.0
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 2.9e-19 100.1 255 32.9
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 9.4e-18 95.1 56 82.1
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 3.0e-16 90.1 60 71.7
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 7.4e-15 85.5 331 28.1
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 4.8e-14 82.8 142 40.8
SEGI_18914 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 5.7e-07 59.3 103 38.8
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 6.3e-06 55.8 42 61.9


User provided reference genes

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