Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G122400 Glycine max HOM05D006876 ORTHO05D008708 3.9e-128 461.5 231 100.0
Glyma.03G003700 Glycine max HOM05D006876 ORTHO05D008708 6.1e-89 331.3 189 85.7
Phvul.001G101300 Phaseolus vulgaris HOM05D006876 ORTHO05D008708 1.6e-84 316.6 235 68.9
VMungo1383G0045 Vigna mungo HOM05D006876 ORTHO05D008708 1.9e-82 309.7 209 72.2
Medtr7g088040 Medicago truncatula HOM05D006876 ORTHO05D008708 9.8e-71 270.8 193 69.4
Lj1g0024709 Lotus japonicus HOM05D006876 ORTHO05D008708 1.1e-69 267.3 201 66.7
Lalb_Chr24g0400801 Lupinus albus HOM05D006876 ORTHO05D008708 2.0e-68 263.1 192 65.6
PGR142G2444 Punica granatum HOM05D006876 ORTHO05D008708 8.9e-64 247.7 208 58.7
CiPaw.09G161500 Carya illinoinensis HOM05D006876 ORTHO05D008708 2.0e-63 246.5 208 59.6
MD12G1111100 Malus domestica HOM05D006876 ORTHO05D008708 3.4e-63 245.7 217 56.2
arahy.Tifrunner.gnm1.ann1.SXUX32 Arachis hypogaea HOM05D006876 ORTHO05D008708 6.4e-62 241.5 245 55.1
arahy.Tifrunner.gnm1.ann1.U8TZLL Arachis hypogaea HOM05D006876 ORTHO05D008708 8.3e-62 241.1 245 55.1
Manes.09G001600 Manihot esculenta HOM05D006876 ORTHO05D008708 5.4e-61 238.4 227 52.9
Prupe.7G023500 Prunus persica HOM05D006876 ORTHO05D008708 2.7e-60 236.1 226 54.0
Cc06_g21190 Coffea canephora HOM05D006876 ORTHO05D008708 3.5e-60 235.7 204 56.4
Dinv13650 Davidia involucrata HOM05D006876 ORTHO05D008708 3.5e-60 235.7 199 58.8
Peaxi162Scf00003g05358 Petunia axillaris HOM05D006876 ORTHO05D008708 3.5e-60 235.7 215 55.3
RcHm_v2.0_Chr7g0183121 Rosa chinensis HOM05D006876 ORTHO05D008708 1.0e-59 234.2 200 56.5
MELO3C019167.2 Cucumis melo HOM05D006876 ORTHO05D008708 1.7e-59 233.4 196 57.7
PGSC0003DMG400007191 Solanum tuberosum HOM05D006876 ORTHO05D008708 1.7e-59 233.4 193 58.0
QL07p015416 Quercus lobata HOM05D006876 ORTHO05D008708 2.3e-59 233.0 214 55.6
Cpa.g.sc33.174 Carica papaya HOM05D006876 ORTHO05D008708 3.9e-59 232.3 214 55.6
FAN19G1913 Fragaria x ananassa HOM05D006876 ORTHO05D008708 5.1e-59 231.9 212 54.7
CANSAT78G2074 Cannabis sativa HOM05D006876 ORTHO05D008708 6.6e-59 231.5 211 55.5
CSS0024544 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 8.6e-59 231.1 219 53.0
FAN28G2491 Fragaria x ananassa HOM05D006876 ORTHO05D008708 1.9e-58 229.9 212 53.8
CsaV3_4G029000 Cucumis sativus L. HOM05D006876 ORTHO05D008708 3.3e-58 229.2 196 55.6
GSVIVG01025828001 Vitis vinifera HOM05D006876 ORTHO05D008708 4.3e-58 228.8 217 54.8
Sopen10g028620 Solanum pennellii HOM05D006876 ORTHO05D008708 5.6e-58 228.4 227 51.5
ClCG04G005040 Citrullus lanatus HOM05D006876 ORTHO05D008708 7.3e-58 228.0 200 56.5
Migut.K00190 Erythranthe guttata HOM05D006876 ORTHO05D008708 7.3e-58 228.0 198 57.6
Sc19g0007790 Simmondsia chinensis HOM05D006876 ORTHO05D008708 7.3e-58 228.0 190 55.3
Cfa019902 Carpinus fangiana HOM05D006876 ORTHO05D008708 1.2e-57 227.3 203 56.7
Ah.13g077470 Amaranthus hybridus HOM05D006876 ORTHO05D008708 1.6e-57 226.9 190 55.8
Hund24486 Selenicereus undatus HOM05D006876 ORTHO05D008708 2.1e-57 226.5 219 52.1
Solyc10g076930.2 Solanum lycopersicum HOM05D006876 ORTHO05D008708 2.1e-57 226.5 227 51.1
RhsimUnG0021300 Rhododendron simsii HOM05D006876 ORTHO05D008708 2.8e-57 226.1 207 56.0
THA.LOC104803253 Tarenaya hassleriana HOM05D006876 ORTHO05D008708 4.7e-57 225.3 201 55.2
Nitab4.5_0000123g0090 Nicotiana tabacum HOM05D006876 ORTHO05D008708 8.1e-57 224.6 203 54.2
PSO339G4949 Papaver somniferum HOM05D006876 ORTHO05D008708 8.1e-57 224.6 211 51.2
Atru.chr8.919 Acer truncatum HOM05D006876 ORTHO05D008708 1.1e-56 224.2 195 57.4
Sed0006068 Sechium edule HOM05D006876 ORTHO05D008708 1.4e-56 223.8 198 55.1
PSO384G4569 Papaver somniferum HOM05D006876 ORTHO05D008708 1.8e-56 223.4 204 52.5
Ciclev10012641m.g Citrus clementina HOM05D006876 ORTHO05D008708 4.0e-56 222.2 203 55.7
Hma1.2p1_0694F.1_g204340 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 5.2e-56 221.9 220 50.5
SalBow1G4764 Salvia bowleyana HOM05D006876 ORTHO05D008708 5.2e-56 221.9 197 56.3
vmacro07595 Vaccinium macrocarpon HOM05D006876 ORTHO05D008708 1.2e-55 220.7 230 50.9
Aa31LG10G11670 Aethionema arabicum HOM05D006876 ORTHO05D008708 1.5e-55 220.3 195 54.9
CARHR166970 Cardamine hirsuta HOM05D006876 ORTHO05D008708 1.5e-55 220.3 200 55.5
Nitab4.5_0002131g0070 Nicotiana tabacum HOM05D006876 ORTHO05D008708 2.0e-55 219.9 223 51.1
AUR62020968 Chenopodium quinoa HOM05D006876 ORTHO05D008708 2.6e-55 219.5 203 51.7
MSTRG.10760 Avicennia marina HOM05D006876 ORTHO05D008708 4.4e-55 218.8 198 55.1
Migut.K00192 Erythranthe guttata HOM05D006876 ORTHO05D008708 4.4e-55 218.8 193 57.0
Eucgr.K01704 Eucalyptus grandis HOM05D006876 ORTHO05D008708 4.4e-55 218.8 238 49.6
arahy.Tifrunner.gnm1.ann1.R6YTNA Arachis hypogaea HOM05D006876 ORTHO05D008708 5.8e-55 218.4 191 58.6
TWI53G1364 Tripterygium wilfordii HOM05D006876 ORTHO05D008708 9.9e-55 217.6 227 50.7
EL10Ac3g07376 Beta vulgaris HOM05D006876 ORTHO05D008708 1.3e-54 217.2 221 51.1
Potri.006G026300 Populus trichocarpa HOM05D006876 ORTHO05D008708 1.3e-54 217.2 222 50.9
BcaC07g40117 Brassica carinata HOM05D006876 ORTHO05D008708 1.9e-53 213.4 197 51.8
Carub.0005s2355 Capsella rubella HOM05D006876 ORTHO05D008708 1.9e-53 213.4 222 48.2
BcaC07g39992 Brassica carinata HOM05D006876 ORTHO05D008708 3.2e-53 212.6 195 51.8
Psat3g083640 Pisum sativum HOM05D006876 ORTHO05D008708 3.2e-53 212.6 135 72.6
SGA_v2.0_scaffold123G33492 Striga asiatica HOM05D001269 ORTHO05D001083 3.2e-53 212.6 197 53.3
Thhalv10006232m.g Eutrema salsugineum HOM05D006876 ORTHO05D008708 4.1e-53 212.2 200 53.5
Gohir.D13G092600 Gossypium hirsutum HOM05D006876 ORTHO05D008708 4.1e-53 212.2 229 49.8
AL5G38200 Arabidopsis lyrata HOM05D006876 ORTHO05D008708 5.4e-53 211.8 200 52.0
A09p49640 Brassica napus HOM05D006876 ORTHO05D008708 5.4e-53 211.8 202 51.0
BraA09t40417Z Brassica rapa HOM05D006876 ORTHO05D008708 5.4e-53 211.8 202 51.0
MBI19_g10813_MAGBIO Magnolia biondii HOM05D006876 ORTHO05D008708 5.4e-53 211.8 200 53.0
C08p32050 Brassica napus HOM05D006876 ORTHO05D008708 7.1e-53 211.5 195 51.8
BolC8t50823H Brassica oleracea HOM05D006876 ORTHO05D008708 7.1e-53 211.5 195 51.8
Sp5g05770 Schrenkiella parvula HOM05D006876 ORTHO05D008708 7.1e-53 211.5 201 52.2
Thecc.05G117700 Theobroma cacao HOM05D006876 ORTHO05D008708 9.2e-53 211.1 229 48.9
Gohir.A13G086570 Gossypium hirsutum HOM05D006876 ORTHO05D008708 1.2e-52 210.7 228 49.6
AT3G56820 Arabidopsis thaliana HOM05D006876 ORTHO05D008708 2.1e-52 209.9 202 52.5
Duzib114G0933 Durio zibethinus HOM05D006876 ORTHO05D008708 3.0e-51 206.1 206 50.0
Gorai.010G139600 Gossypium raimondii HOM05D006876 ORTHO05D008708 5.1e-51 205.3 236 48.7
Sabra06G0019500 Salix brachista HOM05D006876 ORTHO05D008708 1.1e-50 204.1 222 47.7
Hund24492 Selenicereus undatus HOM05D006876 ORTHO05D008708 1.2e-49 200.7 191 50.8
unitig_899.g15477 Utricularia gibba HOM05D006876 ORTHO05D008708 1.2e-49 200.7 200 50.0
COL.COLO4_21445 Corchorus olitorius HOM05D006876 ORTHO05D008708 1.6e-49 200.3 210 48.1
Haze_20349 Corylus avellana HOM05D006876 ORTHO05D008708 6.2e-49 198.4 236 46.6
TAR623G1567 Trochodendron aralioides HOM05D006876 ORTHO05D008708 6.2e-49 198.4 153 59.5
Aqoxy1G01501 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 1.1e-48 197.6 223 46.6
Lsat_1_v5_gn_6_24200 Lactuca sativa HOM05D006876 ORTHO05D008708 1.4e-48 197.2 205 49.8
Zm00001eb150270 Zea mays HOM05D006876 ORTHO05D008708 6.8e-48 194.9 208 47.1
Os01g0810200 Oryza sativa ssp. japonica HOM05D006876 ORTHO05D008708 7.6e-47 191.4 199 48.7
Aqoxy1G01505 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 4.9e-46 188.7 130 65.4
Nn7g37203 Nelumbo nucifera HOM05D006876 ORTHO05D008708 3.5e-44 182.6 181 51.4
Lj4A828G46 Lonicera japonica HOM05D006876 ORTHO05D008708 1.2e-39 167.5 118 63.6
Hma1.2p1_0694F.1_g204350 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 9.9e-39 164.5 108 66.7
DCAR_020618 Daucus carota HOM05D006876 ORTHO05D008708 6.4e-38 161.8 113 64.6
ATR1096G134 Amborella trichopoda HOM05D006876 ORTHO05D008708 1.2e-36 157.5 130 57.7
SEGI_40976 Sequoiadendron giganteum HOM05D006876 ORTHO05D008708 1.2e-36 157.5 134 50.0
ECA233G0065 Erigeron canadensis HOM05D000444 ORTHO05D000489 7.8e-36 154.8 108 65.7
CSS0021314 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 3.0e-35 152.9 109 63.3
Lalb_Chr02g0157641 Lupinus albus HOM05D006876 ORTHO05D008708 1.5e-34 150.6 170 47.6
FvH4_1g29600 Fragaria vesca HOM05D006876 ORTHO05D008708 8.1e-33 144.8 145 50.3
Oeu032953.2 Olea europaea HOM05D006876 ORTHO05D008708 1.1e-32 144.4 234 37.2
arahy.Tifrunner.gnm1.ann1.S4H51W Arachis hypogaea HOM05D006876 ORTHO05D008708 2.4e-32 143.3 123 55.3
QL05p001451 Quercus lobata HOM05D006876 ORTHO05D008708 1.7e-30 137.1 96 65.6
Actinidia37859 Actinidia chinensis HOM05D006876 ORTHO05D008708 1.6e-28 130.6 87 67.8
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 1.1e-24 117.9 77 68.8
arahy.Tifrunner.gnm1.ann1.8Z6XIB Arachis hypogaea HOM05D006876 ORTHO05D008708 1.4e-24 117.5 76 69.7
arahy.Tifrunner.gnm1.ann1.ERVJ4V Arachis hypogaea HOM05D006876 ORTHO05D008708 2.5e-21 106.7 173 37.0
CBR_g17867 Chara braunii HOM05D006876 ORTHO05D008708 2.5e-21 106.7 122 39.3
Ca_08331_v3 Cicer arietinum L. HOM05D006876 ORTHO05D008708 5.5e-21 105.5 62 74.2
QL05p001731 Quercus lobata HOM05D006876 ORTHO05D008708 1.6e-17 94.0 59 72.9
QL05p085390 Quercus lobata HOM05D006876 ORTHO05D008708 1.6e-17 94.0 59 72.9
arahy.Tifrunner.gnm1.ann1.Q5BN79 Arachis hypogaea HOM05D006876 ORTHO05D008708 2.5e-13 80.1 58 65.5
MCO02G060 Micromonas commoda HOM05D006876 ORTHO05D008708 2.5e-13 80.1 125 33.6
Oeu007164.1 Olea europaea HOM05D006876 ORTHO05D008708 2.1e-12 77.0 71 50.7
Glyma.10G143650 Glycine max HOM05D006876 ORTHO05D008708 2.3e-11 73.6 48 70.8
DCAR_020619 Daucus carota HOM05D006876 ORTHO05D008708 1.9e-10 70.5 123 37.4
Oeu039192.1 Olea europaea HOM05D006876 ORTHO05D008708 5.9e-07 58.9 130 31.5


User provided reference genes

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