Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 1.7e-109 399.4 209 100.0
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 3.8e-90 335.1 210 91.4
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 7.2e-81 304.3 209 81.8
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 8.9e-79 297.4 209 78.9
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 2.9e-74 282.3 211 73.5
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 4.1e-68 261.9 213 69.5
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 1.6e-67 260.0 211 65.4
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 1.3e-66 256.9 211 66.8
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 7.3e-65 251.1 210 64.8
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 2.1e-64 249.6 203 71.4
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 6.2e-64 248.1 210 63.8
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 8.9e-63 244.2 217 61.3
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 2.9e-61 239.2 249 55.4
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 6.8e-55 218.0 213 60.1
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 1.4e-52 210.3 209 60.3
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 1.9e-49 199.9 204 59.8
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 4.4e-46 188.7 242 49.6
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 4.9e-45 185.3 211 54.5
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.2e-44 182.6 211 53.1
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 2.1e-43 179.9 211 55.5
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 7.8e-43 177.9 215 51.6
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.0e-42 177.6 211 52.1
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 2.5e-41 172.9 225 50.2
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 9.6e-41 171.0 214 51.9
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 9.6e-41 171.0 211 49.3
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 1.3e-40 170.6 163 59.5
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 2.8e-40 169.5 223 48.0
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 8.1e-40 167.9 203 48.8
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 2.4e-39 166.4 221 51.6
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 3.1e-39 166.0 220 51.8
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.2e-38 164.1 211 49.3
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 3.4e-38 162.5 224 44.6
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 4.4e-38 162.2 203 49.3
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 6.4e-37 158.3 208 46.2
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 8.4e-37 157.9 217 48.4
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 8.4e-37 157.9 219 47.5
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.4e-36 157.1 209 47.8
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 1.4e-36 157.1 209 46.9
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 2.4e-36 156.4 213 48.8
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 2.4e-36 156.4 205 47.8
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 4.2e-36 155.6 210 46.2
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 7.1e-36 154.8 223 50.2
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 9.3e-36 154.5 215 45.1
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 1.2e-35 154.1 209 44.5
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 1.2e-35 154.1 206 47.6
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.6e-35 153.7 220 45.9
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 1.6e-35 153.7 208 46.2
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 3.5e-35 152.5 210 47.6
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 4.6e-35 152.1 211 47.4
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 4.6e-35 152.1 214 46.3
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 4.6e-35 152.1 221 46.6
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 7.8e-35 151.4 213 46.0
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.0e-34 151.0 209 45.9
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 1.7e-34 150.2 208 46.2
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 2.3e-34 149.8 217 45.2
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 2.3e-34 149.8 213 44.6
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.3e-34 149.8 213 44.6
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 5.1e-34 148.7 219 44.7
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.1e-33 147.5 213 47.9
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 3.3e-33 146.0 208 45.2
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 3.3e-33 146.0 213 44.1
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 9.6e-33 144.4 219 44.3
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 9.6e-33 144.4 211 45.5
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 9.6e-33 144.4 213 43.2
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 1.4e-31 140.6 209 45.0
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 1.8e-31 140.2 210 44.8
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.8e-31 140.2 212 44.8
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 2.4e-31 139.8 210 44.3
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 4.0e-31 139.0 210 45.7
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 5.3e-31 138.7 212 42.9
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 9.0e-31 137.9 213 44.1
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 2.0e-30 136.7 213 43.7
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.6e-30 136.3 216 42.1
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 3.4e-30 136.0 216 42.6
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 4.5e-30 135.6 212 42.0
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 5.8e-30 135.2 212 40.6
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 9.9e-30 134.4 211 44.1
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 1.3e-29 134.0 212 42.5
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.3e-29 134.0 210 43.3
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 1.7e-29 133.7 209 45.0
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.1e-28 131.0 196 43.4
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 1.4e-28 130.6 213 41.3
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 1.9e-28 130.2 212 42.0
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 1.9e-28 130.2 212 42.0
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 1.9e-28 130.2 212 42.0
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 2.4e-28 129.8 195 42.6
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 3.2e-28 129.4 210 43.3
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 4.2e-28 129.0 213 42.3
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 5.4e-28 128.6 208 43.8
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 9.3e-28 127.9 213 41.3
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 1.2e-27 127.5 213 42.3
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.2e-27 127.5 205 45.4
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 1.6e-27 127.1 210 42.9
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 1.6e-27 127.1 229 39.3
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 1.6e-27 127.1 209 42.1
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 2.1e-27 126.7 212 41.5
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 2.7e-27 126.3 218 42.2
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 2.7e-27 126.3 207 44.9
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 3.5e-27 125.9 214 43.0
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 4.6e-27 125.6 216 44.4
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 4.6e-27 125.6 215 42.8
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 1.3e-26 124.0 221 39.8
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 3.0e-26 122.9 209 42.1
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 3.9e-26 122.5 218 40.4
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 5.1e-26 122.1 212 40.1
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 6.7e-26 121.7 199 42.2
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 8.7e-26 121.3 195 42.1
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 8.7e-26 121.3 195 42.1
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 8.7e-26 121.3 195 42.1
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 8.7e-26 121.3 196 42.9
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 1.5e-25 120.6 195 42.6
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 2.5e-25 119.8 195 40.5
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.3e-25 119.4 213 41.3
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 3.3e-25 119.4 213 41.3
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 4.3e-25 119.0 197 41.6
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 7.4e-25 118.2 190 42.6
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 9.6e-25 117.9 217 41.0
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 9.6e-25 117.9 213 40.8
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 1.6e-24 117.1 211 40.3
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 2.8e-24 116.3 200 44.0
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 2.8e-24 116.3 224 38.8
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.7e-24 115.9 215 40.5
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 4.8e-24 115.5 214 40.7
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 8.1e-24 114.8 195 40.5
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.4e-23 114.0 206 39.8
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 2.4e-23 113.2 211 39.8
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 6.9e-23 111.7 193 42.5
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 9.0e-23 111.3 200 43.0
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 1.2e-22 110.9 218 40.4
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 2.0e-22 110.2 224 38.8
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.3e-21 107.5 215 40.0
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.3e-21 107.5 226 36.7
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 1.7e-21 107.1 189 39.7
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.2e-21 106.7 171 40.9
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.9e-21 106.3 219 37.0
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.1e-20 104.4 184 42.4
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 1.1e-20 104.4 138 47.8
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 1.4e-20 104.0 184 39.1
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 1.4e-20 104.0 184 39.1
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 1.9e-20 103.6 207 38.6
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 1.9e-20 103.6 202 39.6
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 7.1e-20 101.7 175 41.1
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 7.1e-20 101.7 230 35.2
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 1.6e-19 100.5 207 37.2
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 2.1e-19 100.1 189 38.6
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 3.5e-19 99.4 185 39.5
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 3.5e-19 99.4 185 39.5
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 4.6e-19 99.0 189 38.6
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 1.3e-18 97.4 186 38.2
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 3.0e-18 96.3 220 34.1
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 3.9e-18 95.9 183 40.4
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 6.7e-18 95.1 194 43.3
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 3.1e-15 86.3 223 33.2
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.5e-14 84.0 78 60.3
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.3e-13 80.9 135 40.7
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 2.9e-13 79.7 94 53.2
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 3.8e-13 79.3 78 60.3
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 3.8e-13 79.3 216 31.9
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 6.5e-13 78.6 212 29.2
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 6.5e-13 78.6 215 28.4
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.1e-12 77.8 209 29.7
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 2.1e-11 73.6 127 40.2
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 5.1e-10 68.9 213 31.9
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.9e-09 67.0 196 32.1
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 4.3e-09 65.9 198 33.8
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 5.7e-09 65.5 194 29.9
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 7.4e-09 65.1 192 34.4
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 9.7e-09 64.7 214 31.8
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 1.3e-08 64.3 209 29.7
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.6e-08 63.9 194 32.5
Zm00001eb318080 Zea mays HOM05D015480 ORTHO05D445428 8.2e-08 61.6 231 26.4
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 1.1e-07 61.2 194 26.3
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 1.4e-07 60.8 206 28.6
Zm00001eb359900 Zea mays HOM05D015480 ORTHO05D019326 2.4e-07 60.1 191 27.7
Os09g0511300 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 5.3e-07 58.9 183 25.1
EL10Ac6g13908 Beta vulgaris HOM05D029470 ORTHO05D026515 6.9e-07 58.5 223 28.7
CDE07G0150 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.2e-06 57.8 138 36.2
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.5e-06 57.4 197 28.4


User provided reference genes

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