Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 3.7e-209 731.5 418 100.0
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 3.7e-177 625.2 425 87.5
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 5.2e-155 551.6 415 73.3
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 6.8e-155 551.2 414 74.6
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 2.1e-132 476.5 422 64.7
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 3.1e-131 472.6 419 68.5
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 2.5e-125 453.0 450 66.9
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 1.9e-117 426.8 419 65.9
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 1.6e-116 423.7 428 64.7
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 3.7e-116 422.5 424 62.5
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 1.3e-108 397.5 434 63.6
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 6.7e-102 375.2 434 58.5
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 2.6e-82 310.1 455 46.2
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 2.5e-80 303.5 444 46.4
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 8.8e-78 295.0 449 45.4
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 2.6e-77 293.5 454 45.6
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 4.8e-76 289.3 450 46.2
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 2.4e-75 287.0 450 46.2
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 4.1e-75 286.2 455 43.5
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 1.6e-74 284.3 449 45.4
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 7.2e-72 275.4 456 45.2
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 3.6e-71 273.1 435 41.4
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 1.0e-70 271.6 443 41.5
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.0e-70 271.6 458 44.3
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 4.0e-70 269.6 455 44.6
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 6.7e-70 268.9 439 41.5
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 1.5e-69 267.7 457 47.3
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 2.6e-69 266.9 449 48.3
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 9.7e-69 265.0 441 42.0
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 6.3e-68 262.3 444 46.4
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 6.3e-68 262.3 444 41.4
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 5.3e-67 259.2 443 41.1
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.6e-66 257.7 438 41.3
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 5.9e-66 255.8 446 41.0
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 7.7e-66 255.4 441 41.0
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 1.3e-65 254.6 442 40.5
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.3e-65 254.6 435 40.2
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 1.7e-65 254.2 449 42.1
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.2e-65 253.8 437 45.5
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 2.5e-64 250.4 441 39.9
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 3.2e-64 250.0 443 40.9
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 3.2e-64 250.0 461 39.7
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 9.4e-64 248.4 463 39.1
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 3.6e-63 246.5 447 39.4
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 8.8e-62 241.9 432 37.5
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 2.2e-60 237.3 434 40.6
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 4.8e-60 236.1 435 38.6
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 2.1e-55 220.7 437 39.8
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.1e-55 220.7 436 39.4
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 1.0e-54 218.4 378 40.7
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.0e-54 218.4 438 39.5
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.4e-54 218.0 420 39.5
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 4.0e-54 216.5 466 36.9
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.0e-54 216.5 437 39.8
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 1.2e-53 214.9 436 40.1
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 1.7e-52 211.1 482 38.4
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 1.7e-52 211.1 444 34.7
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 4.9e-52 209.5 430 35.6
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 6.3e-52 209.1 432 36.6
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 1.1e-51 208.4 455 35.6
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 1.6e-50 204.5 450 38.2
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 5.9e-50 202.6 429 38.7
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 5.9e-50 202.6 433 38.3
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.7e-49 201.1 425 38.6
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 1.7e-49 201.1 439 36.9
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 8.6e-49 198.7 435 36.6
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 7.3e-48 195.7 490 33.9
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 2.8e-47 193.7 444 35.8
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 2.8e-47 193.7 428 37.4
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 3.6e-47 193.4 435 36.3
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.0e-46 191.8 333 41.1
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 1.0e-46 191.8 441 37.2
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 1.4e-46 191.4 435 36.1
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.0e-46 189.9 332 39.8
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 1.5e-45 188.0 436 35.6
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 1.5e-45 188.0 431 36.4
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 5.8e-45 186.0 437 35.7
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 9.8e-45 185.3 323 38.1
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 1.3e-44 184.9 440 34.5
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 1.7e-44 184.5 435 35.6
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 1.7e-44 184.5 448 36.4
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 2.2e-44 184.1 442 33.3
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 8.3e-44 182.2 439 34.9
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.8e-43 181.0 437 37.8
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 2.4e-43 180.6 448 35.0
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 2.4e-43 180.6 437 35.5
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 5.4e-43 179.5 437 37.5
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 9.2e-43 178.7 454 37.2
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 1.2e-42 178.3 433 36.0
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 2.7e-42 177.2 441 34.2
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 2.7e-42 177.2 448 35.9
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 3.5e-42 176.8 437 38.0
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 3.5e-42 176.8 424 33.3
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 4.6e-42 176.4 459 32.0
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 7.8e-42 175.6 446 33.6
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 1.3e-41 174.9 460 35.9
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 1.3e-41 174.9 418 34.2
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 6.6e-41 172.6 444 37.2
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 8.6e-41 172.2 371 35.0
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.1e-40 171.8 469 32.6
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 1.9e-40 171.0 457 31.5
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 4.3e-40 169.9 427 33.0
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 9.5e-40 168.7 432 36.6
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.2e-39 168.3 447 33.1
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 1.4e-38 164.9 423 34.3
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 6.8e-38 162.5 429 35.9
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 1.2e-37 161.8 323 39.0
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 9.8e-37 158.7 436 32.8
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 1.3e-36 158.3 438 36.5
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 3.7e-36 156.8 426 33.1
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.7e-36 156.8 334 37.4
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 8.3e-36 155.6 482 33.6
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 3.2e-35 153.7 316 35.1
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 4.1e-35 153.3 428 32.7
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 7.0e-35 152.5 450 31.6
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 3.5e-34 150.2 331 37.2
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 6.0e-34 149.4 435 32.2
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 2.3e-33 147.5 421 30.6
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 3.0e-33 147.1 442 31.9
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 8.6e-33 145.6 456 33.8
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 1.5e-32 144.8 332 34.9
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 2.5e-32 144.1 424 29.7
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 5.6e-32 142.9 432 31.7
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.6e-32 142.9 434 32.0
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 7.3e-32 142.5 423 31.4
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 7.3e-32 142.5 402 31.6
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.6e-31 141.4 433 31.9
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 3.6e-31 140.2 420 31.7
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.1e-30 138.7 438 31.5
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 1.1e-30 138.7 436 34.6
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 1.1e-30 138.7 416 29.6
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 1.1e-30 138.7 425 31.8
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 2.3e-30 137.5 424 31.4
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 3.1e-30 137.1 419 29.8
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 6.8e-30 136.0 343 35.3
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.2e-29 135.2 331 34.4
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 5.8e-29 132.9 309 34.3
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 2.2e-28 131.0 421 29.7
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 4.9e-28 129.8 425 32.5
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 6.4e-28 129.4 424 30.7
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 6.4e-28 129.4 332 32.5
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.4e-27 127.5 324 33.0
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 4.1e-27 126.7 420 29.5
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 4.1e-27 126.7 286 36.4
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 2.7e-26 124.0 424 30.0
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 4.6e-26 123.2 283 35.0
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 3.0e-25 120.6 435 30.3
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 5.1e-25 119.8 440 30.0
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 1.6e-23 114.8 265 35.5
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.6e-23 114.8 260 34.6
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 2.8e-23 114.0 434 29.0
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 3.6e-23 113.6 327 33.9
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 1.8e-22 111.3 333 32.7
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 5.2e-22 109.8 371 33.7
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 8.9e-22 109.0 440 30.5
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 2.0e-21 107.8 362 29.8
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 4.4e-21 106.7 259 35.1
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 5.8e-21 106.3 328 33.5
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 2.9e-20 104.0 426 28.6
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 3.8e-20 103.6 328 33.2
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 4.9e-20 103.2 304 37.8
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 3.2e-19 100.5 410 28.0
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 3.2e-19 100.5 415 28.7
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 4.6e-18 96.7 173 37.0
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 9.6e-16 89.0 369 29.5
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 8.1e-15 85.9 329 30.1
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 6.9e-14 82.8 271 32.1
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 1.3e-12 78.6 237 28.7
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 1.7e-12 78.2 337 27.0
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.4e-12 76.3 369 27.6
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 1.1e-11 75.5 161 37.3
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 3.2e-11 73.9 266 30.1
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 3.5e-10 70.5 89 44.9
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 4.6e-10 70.1 89 44.9
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.9e-08 64.7 157 31.2
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.8e-06 58.2 189 32.8
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 5.3e-06 56.6 115 32.2
Hma1.2p1_0421F.1_g149960 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 5.3e-06 56.6 108 33.3


User provided reference genes

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