Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G101200 Glycine max HOM05D002224 ORTHO05D002446 2.8e-45 184.9 92 100.0
Glyma.10G008700 Glycine max HOM05D002224 ORTHO05D002446 7.7e-43 176.8 89 96.6
Glyma.20G086700 Glycine max HOM05D002224 ORTHO05D002446 2.3e-39 165.2 89 92.1
VMungo0720G3056 Vigna mungo HOM05D002224 ORTHO05D002446 2.1e-32 142.1 89 77.5
Phvul.007G271500 Phaseolus vulgaris HOM05D002224 ORTHO05D002446 4.0e-31 137.9 89 74.2
Medtr1g044450 Medicago truncatula HOM05D002224 ORTHO05D002446 3.7e-29 131.3 89 73.0
Ca_11941_v3 Cicer arietinum L. HOM05D002224 ORTHO05D002446 7.0e-28 127.1 90 72.2
Psat6g107120 Pisum sativum HOM05D002224 ORTHO05D002446 1.7e-26 122.5 89 65.2
Ca_11949_v3 Cicer arietinum L. HOM05D002224 ORTHO05D002446 6.5e-26 120.6 90 68.9
arahy.Tifrunner.gnm1.ann1.E2XQ4Y Arachis hypogaea HOM05D002224 ORTHO05D002446 8.5e-26 120.2 92 64.1
TPR.G28750 Trifolium pratense HOM05D002224 ORTHO05D002446 8.5e-26 120.2 89 67.4
Glyma.10G188600 Glycine max HOM05D002224 ORTHO05D002446 4.2e-25 117.9 90 66.7
arahy.Tifrunner.gnm1.ann1.1XI841 Arachis hypogaea HOM05D002224 ORTHO05D002446 9.4e-25 116.7 92 63.0
Lalb_Chr03g0037041 Lupinus albus HOM05D002224 ORTHO05D002446 6.1e-24 114.0 89 65.2
Glyma.20G202100 Glycine max HOM05D002224 ORTHO05D002446 1.8e-23 112.5 90 65.6
Lj5g0007272 Lotus japonicus HOM05D002224 ORTHO05D002446 1.8e-23 112.5 90 64.4
Lalb_Chr19g0128431 Lupinus albus HOM05D002224 ORTHO05D002446 8.8e-23 110.2 89 64.0
arahy.Tifrunner.gnm1.ann1.P060ZG Arachis hypogaea HOM05D002224 ORTHO05D002446 5.7e-22 107.5 84 69.0
arahy.Tifrunner.gnm1.ann1.V2K6XN Arachis hypogaea HOM05D002224 ORTHO05D002446 5.7e-22 107.5 84 69.0
Lalb_Chr02g0150611 Lupinus albus HOM05D002224 ORTHO05D002446 9.8e-22 106.7 88 64.8
TPR.G26447 Trifolium pratense HOM05D002224 ORTHO05D002446 1.3e-21 106.3 90 61.1
Lj6g0016969 Lotus japonicus HOM05D002224 ORTHO05D002446 2.8e-21 105.1 90 65.6
Lalb_Chr21g0312421 Lupinus albus HOM05D002224 ORTHO05D002446 3.7e-21 104.8 88 63.6
Medtr1g073790 Medicago truncatula HOM05D002224 ORTHO05D002446 3.7e-21 104.8 90 58.9
Phvul.007G129700 Phaseolus vulgaris HOM05D002224 ORTHO05D002446 3.1e-20 101.7 90 63.3
RcHm_v2.0_Chr4g0391041 Rosa chinensis HOM05D002224 ORTHO05D002446 4.5e-19 97.8 91 58.2
Psat6g132600 Pisum sativum HOM05D002224 ORTHO05D002446 5.9e-19 97.4 90 54.4
FAN12G0332 Fragaria x ananassa HOM05D002224 ORTHO05D002446 7.7e-19 97.1 92 57.6
VMungo0720G0464 Vigna mungo HOM05D002224 ORTHO05D002446 1.0e-18 96.7 90 60.0
FvH4_4g02970 Fragaria vesca HOM05D002224 ORTHO05D002446 2.2e-18 95.5 91 57.1
FAN17G0240 Fragaria x ananassa HOM05D002224 ORTHO05D002446 2.9e-18 95.1 91 57.1
FAN22G0018 Fragaria x ananassa HOM05D002224 ORTHO05D002446 8.5e-18 93.6 91 56.0
GSVIVG01018133001 Vitis vinifera HOM05D002224 ORTHO05D002446 1.6e-16 89.4 91 53.8
Prupe.1G033200 Prunus persica HOM05D002224 ORTHO05D002446 8.0e-16 87.0 92 55.4
QL06p015938 Quercus lobata HOM05D002224 ORTHO05D002446 1.8e-15 85.9 92 56.5
MD16G1211000 Malus domestica HOM05D002224 ORTHO05D002446 4.0e-15 84.7 92 52.2
Haze_11315 Corylus avellana HOM05D002224 ORTHO05D002446 5.2e-15 84.3 91 50.5
Potri.008G163300 Populus trichocarpa HOM05D002224 ORTHO05D002446 5.2e-15 84.3 89 52.8
CANSAT78G0691 Cannabis sativa HOM05D002224 ORTHO05D002446 2.6e-14 82.0 90 53.3
MD13G1209100 Malus domestica HOM05D002224 ORTHO05D002446 2.6e-14 82.0 92 51.1
Potri.010G075000 Populus trichocarpa HOM05D002224 ORTHO05D002446 2.2e-13 79.0 89 50.6
COL.COLO4_15805 Corchorus olitorius HOM05D002224 ORTHO05D002446 4.9e-13 77.8 93 49.5
Gohir.A09G223700 Gossypium hirsutum HOM05D002224 ORTHO05D002446 4.9e-13 77.8 91 49.5
Nn1g02667 Nelumbo nucifera HOM05D002224 ORTHO05D002446 1.4e-12 76.3 92 45.7
Thecc.04G247700 Theobroma cacao HOM05D002224 ORTHO05D002446 1.4e-12 76.3 91 49.5
Sabra10G0033800 Salix brachista HOM05D002224 ORTHO05D002446 5.4e-12 74.3 89 49.4
Atru.chr4.2182 Acer truncatum HOM05D002224 ORTHO05D002446 7.0e-12 73.9 92 50.0
Gohir.D01G022400 Gossypium hirsutum HOM05D002224 ORTHO05D002446 7.0e-12 73.9 93 47.3
Gorai.002G024900 Gossypium raimondii HOM05D002224 ORTHO05D002446 7.0e-12 73.9 93 47.3
Nn3g19583 Nelumbo nucifera HOM05D002224 ORTHO05D002446 1.2e-11 73.2 91 45.1
Sabra08G0124600 Salix brachista HOM05D002224 ORTHO05D002446 1.2e-11 73.2 89 48.3
CiPaw.01G189300 Carya illinoinensis HOM05D002224 ORTHO05D002446 1.6e-11 72.8 91 52.7
Gohir.D09G225700 Gossypium hirsutum HOM05D002224 ORTHO05D002446 2.7e-11 72.0 91 45.1
Actinidia08434 Actinidia chinensis HOM05D002224 ORTHO05D002446 5.9e-11 70.9 90 46.7
TAR365G0712 Trochodendron aralioides HOM05D002224 ORTHO05D002446 1.3e-10 69.7 91 45.1
Duzib052G0795 Durio zibethinus HOM05D002224 ORTHO05D002446 1.7e-10 69.3 93 47.3
Gorai.006G247200 Gossypium raimondii HOM05D002224 ORTHO05D002446 1.7e-10 69.3 91 44.0
Actinidia05459 Actinidia chinensis HOM05D002224 ORTHO05D002446 2.9e-10 68.6 90 46.7
Manes.03G168200 Manihot esculenta HOM05D002224 ORTHO05D002446 2.9e-10 68.6 92 43.5
CSS0035478 Camellia sinensis var. sinensis HOM05D002224 ORTHO05D002446 3.8e-10 68.2 90 44.4
Gohir.A01G024400 Gossypium hirsutum HOM05D002224 ORTHO05D002446 3.8e-10 68.2 93 46.2
Duzib212G0982 Durio zibethinus HOM05D002224 ORTHO05D002446 1.9e-09 65.9 92 43.5
Lj6C657T15 Lonicera japonica HOM05D002224 ORTHO05D002446 4.3e-09 64.7 91 44.0
CiPaw.02G115800 Carya illinoinensis HOM05D002224 ORTHO05D002446 5.6e-09 64.3 73 50.7
Hund04557 Selenicereus undatus HOM05D002224 ORTHO05D002446 1.6e-08 62.8 91 44.0
CsaV3_3G012500 Cucumis sativus L. HOM05D002224 ORTHO05D002446 2.1e-08 62.4 91 44.0
TAR362G0167 Trochodendron aralioides HOM05D002224 ORTHO05D002446 2.1e-08 62.4 91 41.8
MELO3C006460.2 Cucumis melo HOM05D002224 ORTHO05D002446 3.6e-08 61.6 91 44.0
Ciclev10004192m.g Citrus clementina HOM05D002224 ORTHO05D002446 4.7e-08 61.2 90 42.2
TAR636G2710 Trochodendron aralioides HOM05D002224 ORTHO05D002446 4.0e-07 58.2 90 38.9
Rhsim02G0034400 Rhododendron simsii HOM05D002224 ORTHO05D002446 5.2e-07 57.8 88 38.6
ClCG05G004530 Citrullus lanatus HOM05D002224 ORTHO05D002446 6.8e-07 57.4 93 41.9
MBI11_g40184_MAGBIO Magnolia biondii HOM05D002224 ORTHO05D002446 8.9e-07 57.0 91 38.5
Dinv29900 Davidia involucrata HOM05D002224 ORTHO05D002446 2.0e-06 55.8 91 41.8
Sed0005071 Sechium edule HOM05D002224 ORTHO05D002446 2.6e-06 55.5 91 41.8
AUR62002254 Chenopodium quinoa HOM05D002224 ORTHO05D002446 4.4e-06 54.7 92 40.2
AUR62015466 Chenopodium quinoa HOM05D002224 ORTHO05D002446 4.4e-06 54.7 92 39.1
PGR004G2419 Punica granatum HOM05D002224 ORTHO05D002446 7.5e-06 53.9 90 38.9
Sc25g0004120 Simmondsia chinensis HOM05D002224 ORTHO05D002446 9.8e-06 53.5 92 38.0


User provided reference genes

Program Settings