Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G094301 Glycine max HOM05D005850 ORTHO05D007405 4.1e-25 117.1 52 100.0
Glyma.12G008700 Glycine max HOM05D005850 ORTHO05D007405 5.3e-25 116.7 51 100.0
Glyma.09G227900 Glycine max HOM05D005850 ORTHO05D007405 3.8e-23 110.5 51 96.1
Phvul.011G012400 Phaseolus vulgaris HOM05D005850 ORTHO05D007405 1.1e-22 109.0 51 94.1
Ca_14665_v3 Cicer arietinum L. HOM05D005850 ORTHO05D007405 1.9e-22 108.2 51 88.2
Lalb_Chr19g0140271 Lupinus albus HOM05D005850 ORTHO05D007405 5.5e-22 106.7 51 92.2
TPR.G30190 Trifolium pratense HOM05D005850 ORTHO05D007405 9.4e-22 105.9 51 86.3
VMungo1127G0399 Vigna mungo HOM05D005850 ORTHO05D007405 9.4e-22 105.9 51 90.2
arahy.Tifrunner.gnm1.ann1.2WTJ41 Arachis hypogaea HOM05D005850 ORTHO05D007405 2.1e-21 104.8 51 88.2
arahy.Tifrunner.gnm1.ann1.JQ4W8U Arachis hypogaea HOM05D005850 ORTHO05D007405 2.1e-21 104.8 51 88.2
Lj3g0026332 Lotus japonicus HOM05D005850 ORTHO05D007405 2.7e-21 104.4 51 86.3
Psat0s3467g0080 Pisum sativum HOM05D005850 ORTHO05D007405 6.1e-21 103.2 51 84.3
Medtr0314s0030 Medicago truncatula HOM05D005850 ORTHO05D007405 3.3e-19 97.4 51 82.4
Hma1.2p1_1968F.1_g309460 Hydrangea macrophylla HOM05D005850 ORTHO05D007405 3.7e-18 94.0 51 80.4
Hma1.2p1_1968F.1_g309450 Hydrangea macrophylla HOM05D005850 ORTHO05D007405 1.2e-16 89.0 51 80.4
Cfa003291 Carpinus fangiana HOM05D005850 ORTHO05D007405 1.6e-16 88.6 53 71.7
Atru.chr7.1296 Acer truncatum HOM05D005850 ORTHO05D007405 2.0e-16 88.2 53 73.6
AUR62011029 Chenopodium quinoa HOM05D005850 ORTHO05D007405 2.7e-16 87.8 44 81.8
CSS0015458 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 3.5e-16 87.4 46 80.4
Gohir.A06G060700 Gossypium hirsutum HOM05D005850 ORTHO05D007405 3.5e-16 87.4 51 74.5
Ciclev10008544m.g Citrus clementina HOM05D005850 ORTHO05D007405 5.9e-16 86.7 53 73.6
vmacro20668 Vaccinium macrocarpon HOM05D005850 ORTHO05D007405 7.7e-16 86.3 53 71.7
CiPaw.03G235100 Carya illinoinensis HOM05D005850 ORTHO05D007405 1.3e-15 85.5 53 69.8
QL02p086096 Quercus lobata HOM05D005850 ORTHO05D007405 1.3e-15 85.5 53 69.8
CSS0027687 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 1.7e-15 85.1 46 78.3
Gohir.D06G059100 Gossypium hirsutum HOM05D005850 ORTHO05D007405 1.7e-15 85.1 43 83.7
Gorai.010G068900 Gossypium raimondii HOM05D005850 ORTHO05D007405 1.7e-15 85.1 43 83.7
COL.COLO4_34934 Corchorus olitorius HOM05D005850 ORTHO05D007405 2.2e-15 84.7 53 71.7
CSS0006300 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 2.9e-15 84.3 46 78.3
Dinv41576 Davidia involucrata HOM05D005850 ORTHO05D007405 3.8e-15 84.0 44 79.5
FAN23G2543 Fragaria x ananassa HOM05D005850 ORTHO05D007405 3.8e-15 84.0 47 68.1
FAN26G0510 Fragaria x ananassa HOM05D005850 ORTHO05D007405 3.8e-15 84.0 47 68.1
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 3.8e-15 84.0 47 68.1
FAN28G1812 Fragaria x ananassa HOM05D005850 ORTHO05D007405 3.8e-15 84.0 47 68.1
Potri.018G076700 Populus trichocarpa HOM05D005850 ORTHO05D007405 3.8e-15 84.0 53 69.8
Rhsim01G0091700 Rhododendron simsii HOM05D005850 ORTHO05D007405 3.8e-15 84.0 48 75.0
EL10Ac8g18542 Beta vulgaris HOM05D005850 ORTHO05D007405 6.5e-15 83.2 44 75.0
Actinidia20338 Actinidia chinensis HOM05D005850 ORTHO05D007405 1.5e-14 82.0 53 71.7
Eucgr.C04135 Eucalyptus grandis HOM05D005850 ORTHO05D007405 1.9e-14 81.6 45 75.6
MD02G1062200 Malus domestica HOM05D005850 ORTHO05D007405 1.9e-14 81.6 47 70.2
FAN19G1578 Fragaria x ananassa HOM05D005850 ORTHO05D007405 3.2e-14 80.9 47 66.0
Sed0018565 Sechium edule HOM05D005850 ORTHO05D007405 3.2e-14 80.9 44 77.3
DCAR_028730 Daucus carota HOM05D005850 ORTHO05D007405 7.2e-14 79.7 43 76.7
FvH4_1g05370 Fragaria vesca HOM05D005850 ORTHO05D007405 7.2e-14 79.7 47 63.8
GSVIVG01015433001 Vitis vinifera HOM05D005850 ORTHO05D007405 7.2e-14 79.7 44 77.3
MD02G1050500 Malus domestica HOM05D005850 ORTHO05D007405 9.4e-14 79.3 44 72.7
Thhalv10025099m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 1.2e-13 79.0 50 66.0
Thhalv10025558m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 1.2e-13 79.0 50 66.0
Manes.16G069601 Manihot esculenta HOM05D005850 ORTHO05D007405 1.2e-13 79.0 43 76.7
AL9U10250 Arabidopsis lyrata HOM05D005850 ORTHO05D007405 1.6e-13 78.6 50 66.0
CsaV3_2G002440 Cucumis sativus L. HOM05D005850 ORTHO05D007405 1.6e-13 78.6 44 72.7
RcHm_v2.0_Chr2g0091051 Rosa chinensis HOM05D005850 ORTHO05D007405 1.6e-13 78.6 51 58.8
Aqoxy7G01830 Aquilegia oxysepala HOM05D005850 ORTHO05D007405 2.7e-13 77.8 44 77.3
AT4G13400 Arabidopsis thaliana HOM05D005850 ORTHO05D007405 2.7e-13 77.8 50 66.0
Carub.0007s2916 Capsella rubella HOM05D005850 ORTHO05D007405 3.6e-13 77.4 44 72.7
MELO3C004544.2 Cucumis melo HOM05D005850 ORTHO05D007405 3.6e-13 77.4 44 72.7
Thecc.09G114700 Theobroma cacao HOM05D005850 ORTHO05D007405 4.7e-13 77.0 42 73.8
TAR636G0790 Trochodendron aralioides HOM05D005850 ORTHO05D007405 4.7e-13 77.0 44 72.7
Sp7g10960 Schrenkiella parvula HOM05D005850 ORTHO05D007405 6.1e-13 76.6 43 74.4
THA.LOC104808745 Tarenaya hassleriana HOM05D005850 ORTHO05D007405 8.0e-13 76.3 50 64.0
Migut.J01174 Erythranthe guttata HOM05D005850 ORTHO05D007405 1.0e-12 75.9 44 68.2
PSO063G4477 Papaver somniferum HOM05D005850 ORTHO05D007405 1.4e-12 75.5 44 72.7
PSO782G2614 Papaver somniferum HOM05D005850 ORTHO05D007405 1.4e-12 75.5 44 72.7
Cc06_g09340 Coffea canephora HOM05D005850 ORTHO05D007405 1.8e-12 75.1 43 72.1
Sc07g0007400 Simmondsia chinensis HOM05D005850 ORTHO05D007405 1.8e-12 75.1 55 58.2
CANSAT56G0565 Cannabis sativa HOM05D005850 ORTHO05D007405 2.3e-12 74.7 44 72.7
Lsat_1_v5_gn_5_100240 Lactuca sativa HOM05D005850 ORTHO05D007405 2.3e-12 74.7 53 56.6
Prupe.7G227200 Prunus persica HOM05D005850 ORTHO05D007405 3.0e-12 74.3 44 68.2
BraA04t16569Z Brassica rapa HOM05D005850 ORTHO05D007405 4.0e-12 73.9 51 64.7
CARHR218970 Cardamine hirsuta HOM05D005850 ORTHO05D007405 6.8e-12 73.2 46 67.4
Sabra18G0064500 Salix brachista HOM05D005850 ORTHO05D007405 6.8e-12 73.2 61 57.4
BcaB03g16095 Brassica carinata HOM05D005850 ORTHO05D007405 8.8e-12 72.8 43 72.1
ECA234G3981 Erigeron canadensis HOM05D005850 ORTHO05D007405 8.8e-12 72.8 53 56.6
Aa31LG9G4350 Aethionema arabicum HOM05D005850 ORTHO05D007405 1.2e-11 72.4 51 58.8
Peaxi162Scf00560g00618 Petunia axillaris HOM05D005850 ORTHO05D007405 1.2e-11 72.4 44 68.2
BcaC02g09427 Brassica carinata HOM05D005850 ORTHO05D007405 1.5e-11 72.0 43 72.1
A04p08720 Brassica napus HOM05D005850 ORTHO05D007405 1.5e-11 72.0 43 72.1
C04p42500 Brassica napus HOM05D005850 ORTHO05D007405 1.5e-11 72.0 43 72.1
BolC4t25826H Brassica oleracea HOM05D005850 ORTHO05D007405 1.5e-11 72.0 43 72.1
HanXRQChr12g0355831 Helianthus annuus HOM05D005850 ORTHO05D007405 2.0e-11 71.6 43 65.1
Nn8g39265 Nelumbo nucifera HOM05D005850 ORTHO05D007405 2.0e-11 71.6 44 72.7
HPP92_003437 Vanilla planifolia HOM05D005850 ORTHO05D007405 2.0e-11 71.6 43 72.1
MBI01_g03372_MAGBIO Magnolia biondii HOM05D005850 ORTHO05D007405 2.6e-11 71.2 44 68.2
MBI01_g03369_MAGBIO Magnolia biondii HOM05D005850 ORTHO05D007405 7.5e-11 69.7 44 70.5
FAN12G1654 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.2e-10 68.2 37 73.0
Sopen04g019720 Solanum pennellii HOM05D005850 ORTHO05D007405 2.8e-10 67.8 47 59.6
Ah.14g081400 Amaranthus hybridus HOM05D005850 ORTHO05D007405 8.3e-10 66.2 37 73.0
ATR0037G042 Amborella trichopoda HOM05D005850 ORTHO05D007405 1.1e-09 65.9 44 61.4
TWI32G0506 Tripterygium wilfordii HOM05D005850 ORTHO05D007405 1.4e-09 65.5 53 56.6
PGR102G2365 Punica granatum HOM05D005850 ORTHO05D007405 1.8e-09 65.1 42 66.7
unitig_22.g6630 Utricularia gibba HOM05D005850 ORTHO05D007405 3.1e-09 64.3 43 62.8
MSTRG.19610 Avicennia marina HOM05D005850 ORTHO05D007405 9.1e-09 62.8 44 59.1
Nitab4.5_0004979g0100 Nicotiana tabacum HOM05D005850 ORTHO05D007405 2.7e-08 61.2 45 64.4
Zm00001eb295310 Zea mays HOM05D005850 ORTHO05D007405 5.9e-08 60.1 44 59.1
Nitab4.5_0010299g0010 Nicotiana tabacum HOM05D005850 ORTHO05D007405 1.3e-07 58.9 45 60.0
Os05g0556000 Oryza sativa ssp. japonica HOM05D005850 ORTHO05D007405 3.8e-07 57.4 44 56.8
Zm00001eb343200 Zea mays HOM05D005850 ORTHO05D007405 1.1e-06 55.8 42 61.9


User provided reference genes

Program Settings