Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G093400 Glycine max HOM05D003418 ORTHO05D004105 3.6e-71 271.6 143 100.0
Lj1g0017862 Lotus japonicus HOM05D003418 ORTHO05D004105 2.0e-29 132.9 132 62.9
TPR.G29062 Trifolium pratense HOM05D003418 ORTHO05D004105 2.9e-28 129.0 122 62.3
Medtr7g028805 Medicago truncatula HOM05D003418 ORTHO05D004105 1.7e-25 119.8 125 61.6
arahy.Tifrunner.gnm1.ann1.V4TZMI Arachis hypogaea HOM05D003418 ORTHO05D004105 6.6e-25 117.9 139 54.0
arahy.Tifrunner.gnm1.ann1.XFVS70 Arachis hypogaea HOM05D003418 ORTHO05D004105 6.6e-25 117.9 139 54.0
TAR629G2062 Trochodendron aralioides HOM05D003418 ORTHO05D004105 2.6e-21 105.9 139 49.6
Haze_12439 Corylus avellana HOM05D003418 ORTHO05D004105 3.2e-19 99.0 141 46.8
AUR62017773 Chenopodium quinoa HOM05D003418 ORTHO05D004105 4.1e-19 98.6 119 50.4
Eucgr.I01636 Eucalyptus grandis HOM05D003418 ORTHO05D004105 7.0e-19 97.8 144 47.2
Prupe.1G223700 Prunus persica HOM05D003418 ORTHO05D004105 1.6e-18 96.7 125 51.2
TAR374G1678 Trochodendron aralioides HOM05D003418 ORTHO05D004105 2.1e-18 96.3 120 52.5
THA.LOC104825492 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 7.8e-18 94.4 132 47.7
CARHR026860 Cardamine hirsuta HOM05D003418 ORTHO05D004105 1.3e-17 93.6 125 44.8
CiPaw.06G104400 Carya illinoinensis HOM05D003418 ORTHO05D004105 1.3e-17 93.6 139 45.3
THA.LOC104807144 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 1.3e-17 93.6 125 46.4
THA.LOC104809188 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 1.3e-17 93.6 125 46.4
THA.LOC104822793 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 1.3e-17 93.6 125 46.4
CANSAT01G2188 Cannabis sativa HOM05D003418 ORTHO05D004105 2.3e-17 92.8 125 52.0
Duzib251G0418 Durio zibethinus HOM05D003418 ORTHO05D004105 3.0e-17 92.4 118 49.2
FAN17G2596 Fragaria x ananassa HOM05D003418 ORTHO05D004105 3.9e-17 92.0 129 47.3
MBI11_g22683_MAGBIO Magnolia biondii HOM05D003418 ORTHO05D004105 3.9e-17 92.0 125 51.2
AT1G27290 Arabidopsis thaliana HOM05D003418 ORTHO05D004105 1.9e-16 89.7 125 47.2
Lsat_1_v5_gn_4_781 Lactuca sativa HOM05D003418 ORTHO05D004105 2.5e-16 89.4 124 46.8
TWI18G0155 Tripterygium wilfordii HOM05D003418 ORTHO05D004105 4.3e-16 88.6 132 45.5
BolC7t42298H Brassica oleracea HOM05D003418 ORTHO05D004105 5.6e-16 88.2 125 44.8
Carub.0001s2582 Capsella rubella HOM05D003418 ORTHO05D004105 5.6e-16 88.2 134 44.8
CiPaw.03G057000 Carya illinoinensis HOM05D003418 ORTHO05D004105 5.6e-16 88.2 118 49.2
Haze_14888 Corylus avellana HOM05D003418 ORTHO05D004105 5.6e-16 88.2 137 42.3
QL03p052131 Quercus lobata HOM05D003418 ORTHO05D004105 5.6e-16 88.2 132 43.9
Aa31LG7G9910 Aethionema arabicum HOM05D003418 ORTHO05D004105 9.5e-16 87.4 128 44.5
BcaB03g14004 Brassica carinata HOM05D003418 ORTHO05D004105 9.5e-16 87.4 125 45.6
Cfa007215 Carpinus fangiana HOM05D003418 ORTHO05D004105 9.5e-16 87.4 128 43.8
Lsat_1_v5_gn_3_30720 Lactuca sativa HOM05D000660 ORTHO05D000766 1.2e-15 87.0 124 46.0
Dinv11681 Davidia involucrata HOM05D003418 ORTHO05D004105 1.6e-15 86.7 125 48.0
AL1G40690 Arabidopsis lyrata HOM05D003418 ORTHO05D004105 2.1e-15 86.3 127 45.7
EL10Ac6g15425 Beta vulgaris HOM05D000704 ORTHO05D000526 2.1e-15 86.3 127 46.5
Thhalv10009048m.g Eutrema salsugineum HOM05D003418 ORTHO05D004105 2.1e-15 86.3 125 44.0
C07p17920 Brassica napus HOM05D003418 ORTHO05D004105 2.8e-15 85.9 125 44.0
BraA07t28984Z Brassica rapa HOM05D003418 ORTHO05D004105 2.8e-15 85.9 125 44.0
Hma1.2p1_0065F.1_g035230 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 2.8e-15 85.9 124 46.8
Phvul.L003346 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 2.8e-15 85.9 128 46.9
Lj6g0011251 Lotus japonicus HOM05D003418 ORTHO05D004105 3.6e-15 85.5 129 44.2
Psat7g077520 Pisum sativum HOM05D003418 ORTHO05D004105 3.6e-15 85.5 128 43.0
Duzib268G0386 Durio zibethinus HOM05D003418 ORTHO05D004105 4.7e-15 85.1 117 46.2
Cpa.g.sc43.80 Carica papaya HOM05D003418 ORTHO05D004105 6.2e-15 84.7 144 41.7
Phvul.001G263300 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 6.2e-15 84.7 132 41.7
CiPaw.05G107800 Carya illinoinensis HOM05D003418 ORTHO05D004105 8.1e-15 84.3 125 46.4
Dinv17578 Davidia involucrata HOM05D003418 ORTHO05D004105 8.1e-15 84.3 117 48.7
MBI07_g11273_MAGBIO Magnolia biondii HOM05D003418 ORTHO05D004105 8.1e-15 84.3 137 45.3
Manes.13G009900 Manihot esculenta HOM05D003418 ORTHO05D004105 8.1e-15 84.3 122 45.1
A07p11990 Brassica napus HOM05D003418 ORTHO05D004105 1.1e-14 84.0 125 43.2
MD13G1121400 Malus domestica HOM05D003418 ORTHO05D004105 1.1e-14 84.0 139 42.4
RcHm_v2.0_Chr4g0429941 Rosa chinensis HOM05D003418 ORTHO05D004105 1.4e-14 83.6 126 45.2
Sc11g0000380 Simmondsia chinensis HOM05D003418 ORTHO05D004105 1.4e-14 83.6 138 44.2
Ciclev10032970m.g Citrus clementina HOM05D003418 ORTHO05D004105 1.8e-14 83.2 117 46.2
FAN12G4113 Fragaria x ananassa HOM05D003418 ORTHO05D004105 1.8e-14 83.2 120 49.2
MD16G1121700 Malus domestica HOM05D003418 ORTHO05D004105 1.8e-14 83.2 139 40.3
Rhsim08G0042100 Rhododendron simsii HOM05D003418 ORTHO05D004105 1.8e-14 83.2 130 46.2
CANSAT64G1003 Cannabis sativa HOM05D003418 ORTHO05D004105 2.3e-14 82.8 144 43.1
CAN.G7.14 Capsicum annuum HOM05D003418 ORTHO05D004105 2.3e-14 82.8 129 46.5
Cc11_g17090 Coffea canephora HOM05D003418 ORTHO05D004105 2.3e-14 82.8 121 46.3
CsaV3_6G008230 Cucumis sativus L. HOM05D003418 ORTHO05D004105 2.3e-14 82.8 122 43.4
FAN07G2322 Fragaria x ananassa HOM05D003418 ORTHO05D004105 2.3e-14 82.8 121 48.8
Cc07_g00970 Coffea canephora HOM05D003418 ORTHO05D004105 3.1e-14 82.4 122 46.7
MELO3C022314.2 Cucumis melo HOM05D003418 ORTHO05D004105 3.1e-14 82.4 122 44.3
Nn3g16424 Nelumbo nucifera HOM05D003418 ORTHO05D004105 3.1e-14 82.4 118 46.6
Nn4g22281 Nelumbo nucifera HOM05D003418 ORTHO05D004105 3.1e-14 82.4 118 46.6
THA.LOC104807496 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 3.1e-14 82.4 125 42.4
arahy.Tifrunner.gnm1.ann1.R9UC9A Arachis hypogaea HOM05D003418 ORTHO05D004105 4.0e-14 82.0 129 45.0
arahy.Tifrunner.gnm1.ann1.V484X6 Arachis hypogaea HOM05D003418 ORTHO05D004105 4.0e-14 82.0 129 45.0
CsaV3_4G002780 Cucumis sativus L. HOM05D003418 ORTHO05D004105 4.0e-14 82.0 124 45.2
FvH4_4g23540 Fragaria vesca HOM05D003418 ORTHO05D004105 4.0e-14 82.0 123 48.0
TWI36G1005 Tripterygium wilfordii HOM05D003418 ORTHO05D004105 4.0e-14 82.0 119 44.5
VMungo0251G0083 Vigna mungo HOM05D003418 ORTHO05D004105 4.0e-14 82.0 128 45.3
PGR119G0689 Punica granatum HOM05D003418 ORTHO05D004105 5.2e-14 81.6 125 43.2
Thecc.02G204700 Theobroma cacao HOM05D003418 ORTHO05D004105 5.2e-14 81.6 128 44.5
DCAR_024672 Daucus carota HOM05D003418 ORTHO05D004105 6.8e-14 81.3 118 45.8
Duzib248G1492 Durio zibethinus HOM05D003418 ORTHO05D004105 6.8e-14 81.3 128 46.9
Nitab4.5_0000067g0190 Nicotiana tabacum HOM05D003418 ORTHO05D004105 6.8e-14 81.3 129 44.2
EL10Ac6g13525 Beta vulgaris HOM05D003418 ORTHO05D004105 8.9e-14 80.9 117 48.7
CSS0043963 Camellia sinensis var. sinensis HOM05D003418 ORTHO05D004105 8.9e-14 80.9 125 47.2
ClCG07G015190 Citrullus lanatus HOM05D003418 ORTHO05D004105 8.9e-14 80.9 137 42.3
BcaB03g12071 Brassica carinata HOM05D003418 ORTHO05D004105 1.2e-13 80.5 128 41.4
MELO3C017764.2 Cucumis melo HOM05D003418 ORTHO05D004105 1.2e-13 80.5 137 41.6
Psat5g098080 Pisum sativum HOM05D003418 ORTHO05D004105 1.2e-13 80.5 132 40.9
Actinidia04435 Actinidia chinensis HOM05D003418 ORTHO05D004105 2.0e-13 79.7 120 45.8
Glyma.05G148600 Glycine max HOM05D003418 ORTHO05D004105 2.6e-13 79.3 128 44.5
TPR.G17778 Trifolium pratense HOM05D003418 ORTHO05D004105 2.6e-13 79.3 135 39.3
Glyma.11G252200 Glycine max HOM05D003418 ORTHO05D004105 3.4e-13 79.0 135 42.2
Ca_18018_v3 Cicer arietinum L. HOM05D003418 ORTHO05D004105 4.4e-13 78.6 128 40.6
BcaC05g26544 Brassica carinata HOM05D003418 ORTHO05D004105 5.8e-13 78.2 125 41.6
Ca_16446_v3 Cicer arietinum L. HOM05D003418 ORTHO05D004105 5.8e-13 78.2 125 42.4
Ciclev10017602m.g Citrus clementina HOM05D003418 ORTHO05D004105 5.8e-13 78.2 124 44.4
Gorai.005G165100 Gossypium raimondii HOM05D003418 ORTHO05D004105 5.8e-13 78.2 125 44.8
Lj4g0014081 Lotus japonicus HOM05D003418 ORTHO05D004105 5.8e-13 78.2 124 43.5
A08p26430 Brassica napus HOM05D003418 ORTHO05D004105 7.5e-13 77.8 120 41.7
BolC3t19656H Brassica oleracea HOM05D003418 ORTHO05D004105 7.5e-13 77.8 120 41.7
Eucgr.H04620 Eucalyptus grandis HOM05D003418 ORTHO05D004105 7.5e-13 77.8 142 39.4
Gohir.D12G153300 Gossypium hirsutum HOM05D003418 ORTHO05D004105 7.5e-13 77.8 128 43.0
Oeu056671.1 Olea europaea HOM05D003418 ORTHO05D004105 7.5e-13 77.8 118 41.5
PGSC0003DMG400013209 Solanum tuberosum HOM05D003418 ORTHO05D004105 7.5e-13 77.8 129 39.5
Gohir.A12G149400 Gossypium hirsutum HOM05D003418 ORTHO05D004105 9.9e-13 77.4 128 43.0
Gorai.008G165800 Gossypium raimondii HOM05D003418 ORTHO05D004105 9.9e-13 77.4 128 43.0
HanXRQChr06g0174711 Helianthus annuus HOM05D003418 ORTHO05D004105 9.9e-13 77.4 119 45.4
Potri.003G170300 Populus trichocarpa HOM05D003418 ORTHO05D004105 9.9e-13 77.4 125 44.8
Hma1.2p1_0275F.1_g110610 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 1.3e-12 77.0 118 44.9
Potri.001G058100 Populus trichocarpa HOM05D003418 ORTHO05D004105 1.3e-12 77.0 137 41.6
BraA08t34595Z Brassica rapa HOM05D003418 ORTHO05D004105 1.7e-12 76.6 120 40.8
Aqoxy3G01580 Aquilegia oxysepala HOM05D003418 ORTHO05D004105 2.2e-12 76.3 123 43.9
Manes.12G009300 Manihot esculenta HOM05D003418 ORTHO05D004105 2.2e-12 76.3 120 43.3
Medtr3g084990 Medicago truncatula HOM05D003418 ORTHO05D004105 2.2e-12 76.3 133 38.3
PGR102G1973 Punica granatum HOM05D003418 ORTHO05D004105 2.2e-12 76.3 118 43.2
SGA_v2.0_scaffold253G45188 Striga asiatica HOM05D003418 ORTHO05D004105 2.2e-12 76.3 118 44.9
Glyma.18G004900 Glycine max HOM05D003418 ORTHO05D004105 3.7e-12 75.5 125 43.2
Hund25475 Selenicereus undatus HOM05D003418 ORTHO05D004105 4.9e-12 75.1 110 46.4
Gohir.A03G125000 Gossypium hirsutum HOM05D003418 ORTHO05D004105 6.4e-12 74.7 125 43.2
SalBow2G0507 Salvia bowleyana HOM05D003418 ORTHO05D004105 6.4e-12 74.7 119 41.2
Sed0009671 Sechium edule HOM05D003418 ORTHO05D004105 6.4e-12 74.7 129 40.3
ATR0561G224 Amborella trichopoda HOM05D003418 ORTHO05D004105 8.3e-12 74.3 130 43.1
C05p25990 Brassica napus HOM05D003418 ORTHO05D004105 8.3e-12 74.3 125 40.8
HanXRQChr05g0128721 Helianthus annuus HOM05D003418 ORTHO05D004105 8.3e-12 74.3 117 40.2
SalBow8G1362 Salvia bowleyana HOM05D003418 ORTHO05D004105 8.3e-12 74.3 118 41.5
C03p73650 Brassica napus HOM05D003418 ORTHO05D004105 1.1e-11 73.9 123 41.5
Oeu049146.3 Olea europaea HOM05D003418 ORTHO05D004105 1.1e-11 73.9 125 40.0
SalBow7G0626 Salvia bowleyana HOM05D003418 ORTHO05D004105 1.1e-11 73.9 119 43.7
unitig_22.g6403 Utricularia gibba HOM05D003418 ORTHO05D003127 1.1e-11 73.9 121 41.3
Gohir.D02G147400 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.4e-11 73.6 125 43.2
Actinidia08059 Actinidia chinensis HOM05D003418 ORTHO05D004105 1.9e-11 73.2 125 44.0
Nitab4.5_0000340g0030 Nicotiana tabacum HOM05D003418 ORTHO05D004105 1.9e-11 73.2 125 39.2
Sed0008687 Sechium edule HOM05D003418 ORTHO05D004105 1.9e-11 73.2 124 44.4
Solyc05g015710.3 Solanum lycopersicum HOM05D003418 ORTHO05D004105 1.9e-11 73.2 134 35.1
TPR.G17100 Trifolium pratense HOM05D003418 ORTHO05D004105 2.4e-11 72.8 127 41.7
MSTRG.8015 Avicennia marina HOM05D003418 ORTHO05D004105 3.2e-11 72.4 126 38.9
SGA_v2.0_scaffold87G27173 Striga asiatica HOM05D003418 ORTHO05D004105 3.2e-11 72.4 128 39.8
Sed0026789 Sechium edule HOM05D003418 ORTHO05D004105 4.1e-11 72.0 116 43.1
Sopen05g011160 Solanum pennellii HOM05D003418 ORTHO05D004105 4.1e-11 72.0 117 40.2
Actinidia09637 Actinidia chinensis HOM05D003418 ORTHO05D004105 5.4e-11 71.6 125 46.4
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 5.4e-11 71.6 147 38.1
Medtr8g097040 Medicago truncatula HOM05D003418 ORTHO05D004105 7.1e-11 71.2 135 43.0
Sabra01G0041900 Salix brachista HOM05D003418 ORTHO05D004105 7.1e-11 71.2 137 40.1
Lalb_Chr23g0278191 Lupinus albus HOM05D003418 ORTHO05D004105 9.2e-11 70.9 120 41.7
PGSC0003DMG401021901 Solanum tuberosum HOM05D003418 ORTHO05D004105 9.2e-11 70.9 117 40.2
Rhsim12G0093300 Rhododendron simsii HOM05D003418 ORTHO05D004105 1.6e-10 70.1 137 40.9
Oeu004464.1 Olea europaea HOM05D003418 ORTHO05D004105 3.5e-10 68.9 117 40.2
SalBow4G1936 Salvia bowleyana HOM05D003418 ORTHO05D004105 3.5e-10 68.9 117 41.9
Atru.chr11.2346 Acer truncatum HOM05D003418 ORTHO05D004105 6.0e-10 68.2 114 41.2
Migut.K00956 Erythranthe guttata HOM05D003418 ORTHO05D004105 6.0e-10 68.2 125 37.6
PSO478G1430 Papaver somniferum HOM05D003418 ORTHO05D004105 1.0e-09 67.4 120 40.8
PSO017G5034 Papaver somniferum HOM05D003418 ORTHO05D004105 1.3e-09 67.0 121 40.5
PSO478G5262 Papaver somniferum HOM05D003418 ORTHO05D004105 1.3e-09 67.0 134 41.0
SalBow4G0150 Salvia bowleyana HOM05D003418 ORTHO05D004105 1.3e-09 67.0 117 41.0
PSO017G5305 Papaver somniferum HOM05D003418 ORTHO05D004105 1.7e-09 66.6 134 40.3
CDE02G2290 Ceratophyllum demersum HOM05D003418 ORTHO05D004105 2.3e-09 66.2 142 37.3
Thecc.04G039200 Theobroma cacao HOM05D003418 ORTHO05D004105 2.3e-09 66.2 121 40.5
Nitab4.5_0005872g0010 Nicotiana tabacum HOM05D003418 ORTHO05D004105 3.0e-09 65.9 125 39.2
Gohir.A01G154140 Gossypium hirsutum HOM05D003418 ORTHO05D004105 8.6e-09 64.3 142 34.5
Cpa.g.sc171.2 Carica papaya HOM05D003418 ORTHO05D004105 1.1e-08 63.9 118 43.2
Hma1.2p1_1057F.1_g252730 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 1.5e-08 63.5 62 56.5
unitig_8.g3133 Utricularia gibba HOM05D003418 ORTHO05D004105 1.5e-08 63.5 117 40.2
Nitab4.5_0012747g0020 Nicotiana tabacum HOM05D003418 ORTHO05D004105 2.5e-08 62.8 108 45.4
Gorai.002G181900 Gossypium raimondii HOM05D003418 ORTHO05D004105 4.3e-08 62.0 132 35.6
HPP92_025259 Vanilla planifolia HOM05D003418 ORTHO05D004105 4.3e-08 62.0 134 37.3
CSS0019501 Camellia sinensis var. sinensis HOM05D003418 ORTHO05D004105 5.6e-08 61.6 126 41.3
Gohir.D01G146200 Gossypium hirsutum HOM05D003418 ORTHO05D004105 5.6e-08 61.6 132 35.6
Gorai.009G332100 Gossypium raimondii HOM05D003418 ORTHO05D004105 5.6e-08 61.6 112 38.4
Gohir.D05G311100 Gossypium hirsutum HOM05D003418 ORTHO05D004105 7.3e-08 61.2 112 38.4
Lsat_1_v5_gn_2_93281 Lactuca sativa HOM05D003418 ORTHO05D004105 7.3e-08 61.2 118 36.4
Gohir.A05G310300 Gossypium hirsutum HOM05D003418 ORTHO05D004105 9.5e-08 60.8 112 38.4
Peaxi162Scf00518g00025 Petunia axillaris HOM05D003418 ORTHO05D004105 9.5e-08 60.8 118 37.3
Sopen04g016940 Solanum pennellii HOM05D003418 ORTHO05D004105 1.2e-07 60.5 59 55.9
Lalb_Chr07g0187041 Lupinus albus HOM05D003418 ORTHO05D004105 1.6e-07 60.1 128 35.9
SHI04041 Sapria himalayana HOM05D000704 ORTHO05D000526 2.8e-07 59.3 119 41.2
SGA_v2.0_scaffold391G50621 Striga asiatica HOM05D003418 ORTHO05D004105 4.7e-07 58.5 127 33.1
MSTRG.492 Avicennia marina HOM05D003418 ORTHO05D004105 8.1e-07 57.8 125 34.4
Ah.03g136010 Amaranthus hybridus HOM05D003418 ORTHO05D004105 1.1e-06 57.4 100 46.0
Lalb_Chr12g0206031 Lupinus albus HOM05D003418 ORTHO05D004105 3.1e-06 55.8 128 32.0
Aqoxy5G03322 Aquilegia oxysepala HOM05D003418 ORTHO05D004105 8.9e-06 54.3 102 38.2


User provided reference genes

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