Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 5.9e-95 350.9 183 100.0
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 6.5e-86 320.9 181 91.2
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 4.2e-85 318.2 182 90.7
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 1.3e-78 296.6 183 83.6
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 1.9e-77 292.7 181 84.0
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 1.0e-75 287.0 179 82.1
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 5.2e-75 284.6 184 80.4
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 1.7e-73 279.6 175 84.0
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 4.1e-72 275.0 181 78.5
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 5.4e-72 274.6 183 80.3
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 1.3e-70 270.0 183 75.4
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 5.0e-70 268.1 177 76.8
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 4.3e-69 265.0 181 76.2
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 2.8e-68 262.3 174 75.9
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 4.7e-68 261.5 178 74.7
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 6.2e-68 261.2 177 74.6
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 1.1e-67 260.4 180 74.4
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 1.4e-67 260.0 177 75.7
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 4.0e-67 258.5 181 72.9
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 1.5e-66 256.5 184 72.8
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 7.5e-66 254.2 179 73.2
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 1.3e-65 253.4 179 73.2
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 2.2e-65 252.7 183 71.0
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 2.9e-65 252.3 177 72.3
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 8.3e-65 250.8 179 71.5
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 1.1e-64 250.4 176 74.4
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.4e-64 250.0 172 73.8
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 1.4e-64 250.0 170 75.3
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.9e-64 249.6 177 68.4
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 2.4e-64 249.2 182 71.4
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 3.2e-64 248.8 179 70.9
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 3.2e-64 248.8 178 70.8
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 9.2e-64 247.3 174 72.4
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 9.2e-64 247.3 176 70.5
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 1.2e-63 246.9 174 73.0
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 1.2e-63 246.9 176 71.0
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 2.0e-63 246.1 183 68.9
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 4.6e-63 245.0 178 70.8
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 6.0e-63 244.6 183 68.3
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 1.0e-62 243.8 176 68.2
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 3.9e-62 241.9 184 65.2
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 3.9e-62 241.9 178 69.7
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 5.0e-62 241.5 178 69.1
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 6.6e-62 241.1 177 68.9
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 8.6e-62 240.7 176 69.3
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.1e-61 240.4 191 66.0
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 1.9e-61 239.6 169 73.4
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 2.5e-61 239.2 183 66.1
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 2.5e-61 239.2 179 67.0
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 3.3e-61 238.8 174 69.0
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 4.3e-61 238.4 173 69.4
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 4.3e-61 238.4 172 69.2
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 7.3e-61 237.7 171 71.3
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 7.3e-61 237.7 178 66.9
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 9.5e-61 237.3 178 68.0
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 1.2e-60 236.9 192 65.6
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 6.2e-60 234.6 178 67.4
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 1.4e-59 233.4 173 67.6
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 4.0e-59 231.9 179 67.6
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 4.0e-59 231.9 179 67.6
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 1.5e-58 229.9 179 67.0
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 1.5e-58 229.9 179 67.0
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 2.6e-58 229.2 178 65.7
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 4.4e-58 228.4 178 64.6
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 4.4e-58 228.4 169 68.6
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 4.4e-58 228.4 174 69.0
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 9.9e-58 227.3 169 69.2
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 2.9e-57 225.7 169 66.9
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 4.9e-57 224.9 257 54.1
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 3.2e-56 222.2 141 79.4
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 3.2e-56 222.2 174 60.9
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 1.2e-55 220.3 163 72.4
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 1.2e-55 220.3 171 64.9
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 3.5e-55 218.8 140 79.3
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 4.6e-55 218.4 178 62.9
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 6.0e-55 218.0 180 63.3
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 3.9e-54 215.3 176 62.5
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 6.6e-54 214.5 166 69.3
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 1.1e-53 213.8 172 63.4
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 9.5e-53 210.7 167 67.7
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 2.1e-52 209.5 162 67.9
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.1e-51 207.2 147 74.1
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 4.4e-50 201.8 168 64.3
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 1.7e-49 199.9 170 58.2
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 2.9e-49 199.1 207 53.1
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 3.8e-49 198.7 151 68.9
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 8.4e-49 197.6 166 60.8
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 3.2e-48 195.7 152 63.8
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 9.2e-48 194.1 140 70.0
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 9.2e-48 194.1 140 65.0
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 4.3e-45 185.3 143 68.5
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 2.1e-44 183.0 177 56.5
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 2.0e-42 176.4 138 66.7
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 4.4e-42 175.3 118 73.7
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 2.2e-41 172.9 195 51.3
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 2.1e-39 166.4 186 50.5
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 1.0e-38 164.1 169 48.5
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 1.7e-38 163.3 169 49.1
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 6.6e-38 161.4 140 64.3
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 9.6e-37 157.5 118 64.4
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 9.6e-37 157.5 123 65.9
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 1.1e-35 154.1 143 54.5
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 3.9e-30 135.6 119 59.7
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 5.6e-29 131.7 160 41.9
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 3.5e-23 112.5 88 64.8
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 1.0e-17 94.4 64 75.0
FAN02G0503 Fragaria x ananassa HOM05D001420 ORTHO05D009292 3.5e-15 85.9 67 65.7
Hund12739 Selenicereus undatus HOM05D001420 ORTHO05D009292 2.2e-12 76.6 53 75.5
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 3.1e-11 72.8 151 29.1
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 5.9e-10 68.6 39 76.9
Medtr1g051110 Medicago truncatula HOM05D001420 ORTHO05D009292 1.3e-09 67.4 72 56.9


User provided reference genes

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