Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G088200 Glycine max HOM05D000135 ORTHO05D000816 4.4e-21 105.1 51 100.0
Glyma.16G059300 Glycine max HOM05D000135 ORTHO05D000816 1.2e-15 87.0 51 82.4
FvH4_6g53150 Fragaria vesca HOM05D000135 ORTHO05D000816 2.6e-13 79.3 51 74.5
FAN14G0778 Fragaria x ananassa HOM05D000135 ORTHO05D000816 2.6e-13 79.3 51 74.5
Phvul.001G095600 Phaseolus vulgaris HOM05D000135 ORTHO05D000816 1.3e-12 77.0 51 76.5
Psat3g176000 Pisum sativum HOM05D000135 ORTHO05D000816 1.7e-12 76.6 52 75.0
TPR.G39344 Trifolium pratense HOM05D000135 ORTHO05D000816 1.7e-12 76.6 51 70.6
RcHm_v2.0_Chr2g0175201 Rosa chinensis HOM05D000135 ORTHO05D000816 2.8e-12 75.9 51 72.5
Ca_28119_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000816 3.7e-12 75.5 51 70.6
VMungo1383G0529 Vigna mungo HOM05D000135 ORTHO05D000816 3.7e-12 75.5 51 72.5
Cc07_g00660 Coffea canephora HOM05D000135 ORTHO05D000816 4.8e-12 75.1 50 72.0
CiPaw.03G053600 Carya illinoinensis HOM05D000135 ORTHO05D000816 6.3e-12 74.7 52 73.1
Phvul.004G055200 Phaseolus vulgaris HOM05D000135 ORTHO05D000816 6.3e-12 74.7 51 70.6
FAN02G0421 Fragaria x ananassa HOM05D000135 ORTHO05D000816 1.1e-11 73.9 51 70.6
Medtr6g023460 Medicago truncatula HOM05D000135 ORTHO05D000816 1.1e-11 73.9 51 66.7
Atru.chr6.2532 Acer truncatum HOM05D000135 ORTHO05D000816 1.8e-11 73.2 51 68.6
Potri.001G332900 Populus trichocarpa HOM05D000135 ORTHO05D000816 1.8e-11 73.2 51 70.6
QL02p071822 Quercus lobata HOM05D000135 ORTHO05D000816 2.4e-11 72.8 50 70.0
TPR.G38330 Trifolium pratense HOM05D000135 ORTHO05D000816 2.4e-11 72.8 52 71.2
Lalb_Chr14g0363211 Lupinus albus HOM05D000135 ORTHO05D000816 4.1e-11 72.0 51 64.7
Gohir.D04G078000 Gossypium hirsutum HOM05D000135 ORTHO05D000816 5.3e-11 71.6 51 64.7
Gorai.012G087800 Gossypium raimondii HOM05D000135 ORTHO05D000816 5.3e-11 71.6 51 64.7
Hma1.2p1_1219F.1_g267970 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 5.3e-11 71.6 51 64.7
Hma1.2p1_2105F.1_g314145 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 5.3e-11 71.6 51 64.7
Lj1g0014603 Lotus japonicus HOM05D000135 ORTHO05D000816 5.3e-11 71.6 49 77.6
Haze_14848 Corylus avellana HOM05D000135 ORTHO05D000816 7.0e-11 71.2 47 70.2
Hma1.2p1_1219F.1_g267940 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 7.0e-11 71.2 51 62.7
Dinv33354 Davidia involucrata HOM05D000135 ORTHO05D000816 9.1e-11 70.9 51 70.6
Duzib147G0709 Durio zibethinus HOM05D000135 ORTHO05D000816 9.1e-11 70.9 51 66.7
Oeu011957.1 Olea europaea HOM05D000135 ORTHO05D000816 1.2e-10 70.5 53 69.8
Prupe.3G303600 Prunus persica HOM05D000135 ORTHO05D000816 1.2e-10 70.5 51 66.7
SalBow1G7946 Salvia bowleyana HOM05D000135 ORTHO05D000816 1.2e-10 70.5 51 62.7
VMungo0464G1988 Vigna mungo HOM05D000135 ORTHO05D000816 1.6e-10 70.1 51 64.7
MD17G1014200 Malus domestica HOM05D000135 ORTHO05D000816 2.0e-10 69.7 51 66.7
Rhsim08G0044100 Rhododendron simsii HOM05D000135 ORTHO05D000816 2.0e-10 69.7 51 64.7
Cfa021347 Carpinus fangiana HOM05D000135 ORTHO05D000816 2.6e-10 69.3 49 65.3
Psat1g085520 Pisum sativum HOM05D000135 ORTHO05D000816 2.6e-10 69.3 51 64.7
Sabra16G0213700 Salix brachista HOM05D000135 ORTHO05D000816 2.6e-10 69.3 51 62.7
Sabra16G0213800 Salix brachista HOM05D000135 ORTHO05D000816 2.6e-10 69.3 51 62.7
Gohir.A05G339500 Gossypium hirsutum HOM05D000135 ORTHO05D000816 3.5e-10 68.9 51 62.7
CANSAT64G0052 Cannabis sativa HOM05D000135 ORTHO05D000816 4.5e-10 68.6 51 60.8
SalBow1G2517 Salvia bowleyana HOM05D016915 ORTHO05D000816 4.5e-10 68.6 50 64.0
SalBow7G4752 Salvia bowleyana HOM05D016915 ORTHO05D000816 4.5e-10 68.6 50 64.0
MSTRG.3087 Avicennia marina HOM05D000135 ORTHO05D000816 5.9e-10 68.2 51 62.7
SalBow7G1515 Salvia bowleyana HOM05D000135 ORTHO05D000816 5.9e-10 68.2 50 62.0
Lj7C609T6 Lonicera japonica HOM05D000135 ORTHO05D000816 7.7e-10 67.8 50 64.0
Thecc.04G033300 Theobroma cacao HOM05D000135 ORTHO05D000816 1.3e-09 67.0 51 62.7
Ciclev10018267m.g Citrus clementina HOM05D000135 ORTHO05D000816 1.7e-09 66.6 49 65.3
MD09G1013600 Malus domestica HOM05D000135 ORTHO05D000816 2.2e-09 66.2 51 62.7
SalBow1G3513 Salvia bowleyana HOM05D016915 ORTHO05D000816 3.8e-09 65.5 50 60.0
Hma1.2p1_1219F.1_g267950 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 5.0e-09 65.1 51 58.8
vmacro05943 Vaccinium macrocarpon HOM05D000135 ORTHO05D000816 6.5e-09 64.7 49 65.3
COL.COLO4_17166 Corchorus olitorius HOM05D000135 ORTHO05D000816 8.5e-09 64.3 47 66.0
Lalb_Chr22g0360481 Lupinus albus HOM05D000135 ORTHO05D000816 8.5e-09 64.3 51 58.8
Oeu035216.1 Olea europaea HOM05D000135 ORTHO05D000816 8.5e-09 64.3 51 60.8
SalBow7G4318 Salvia bowleyana HOM05D016915 ORTHO05D000816 8.5e-09 64.3 49 59.2
Actinidia05909 Actinidia chinensis HOM05D000135 ORTHO05D000816 1.1e-08 63.9 51 56.9
Duzib264G0451 Durio zibethinus HOM05D000135 ORTHO05D000816 1.1e-08 63.9 47 63.8
Duzib264G0910 Durio zibethinus HOM05D000135 ORTHO05D000816 1.1e-08 63.9 47 63.8
Eucgr.J02318 Eucalyptus grandis HOM05D000135 ORTHO05D000816 1.1e-08 63.9 51 60.8
vmacro05944 Vaccinium macrocarpon HOM05D000135 ORTHO05D000816 1.1e-08 63.9 50 62.0
TWI12G0256 Tripterygium wilfordii HOM05D000135 ORTHO05D000816 1.5e-08 63.5 50 64.0
CSS0033756 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000816 1.9e-08 63.2 46 65.2
Migut.K01451 Erythranthe guttata HOM05D000135 ORTHO05D000816 1.9e-08 63.2 51 56.9
Peaxi162Scf00700g00017 Petunia axillaris HOM05D000135 ORTHO05D000816 1.9e-08 63.2 51 60.8
Rhsim10G0007700 Rhododendron simsii HOM05D000135 ORTHO05D000816 1.9e-08 63.2 50 60.0
Rhsim10G0007900 Rhododendron simsii HOM05D000135 ORTHO05D000816 1.9e-08 63.2 50 60.0
DCAR_015089 Daucus carota HOM05D000135 ORTHO05D000816 2.5e-08 62.8 47 63.8
Manes.17G104400 Manihot esculenta HOM05D000135 ORTHO05D000816 2.5e-08 62.8 45 64.4
Migut.F00079 Erythranthe guttata HOM05D016915 ORTHO05D000816 3.2e-08 62.4 47 59.6
Migut.K01452 Erythranthe guttata HOM05D016915 ORTHO05D000816 3.2e-08 62.4 50 56.0
Oeu058772.1 Olea europaea HOM05D000135 ORTHO05D000816 3.2e-08 62.4 56 60.7
ECA232G4862 Erigeron canadensis HOM05D000135 ORTHO05D000816 4.2e-08 62.0 49 61.2
Manes.15G159100 Manihot esculenta HOM05D000135 ORTHO05D000816 4.2e-08 62.0 50 62.0
unitig_748.g7057 Utricularia gibba HOM05D000135 ORTHO05D000816 4.2e-08 62.0 55 58.2
Manes.05G113200 Manihot esculenta HOM05D000135 ORTHO05D000816 7.2e-08 61.2 47 59.6
GSVIVG01013467001 Vitis vinifera HOM05D000135 ORTHO05D000816 7.2e-08 61.2 47 63.8
Rhsim10G0008000 Rhododendron simsii HOM05D000135 ORTHO05D000816 9.4e-08 60.8 50 58.0
SGA_v2.0_scaffold47G17572 Striga asiatica HOM05D000135 ORTHO05D000816 9.4e-08 60.8 50 54.0
Cpa.g.sc36.91 Carica papaya HOM05D000135 ORTHO05D000816 1.2e-07 60.5 47 63.8
Nitab4.5_0002498g0070 Nicotiana tabacum HOM05D000135 ORTHO05D000816 1.2e-07 60.5 47 59.6
Sc07g0004160 Simmondsia chinensis HOM05D000135 ORTHO05D000816 1.2e-07 60.5 51 58.8
Migut.K01450 Erythranthe guttata HOM05D000135 ORTHO05D000816 1.6e-07 60.1 50 54.0
Lsat_1_v5_gn_9_1180 Lactuca sativa HOM05D000135 ORTHO05D000816 1.6e-07 60.1 51 52.9
Lju41C51T3 Lonicera japonica HOM05D000135 ORTHO05D000816 2.1e-07 59.7 45 60.0
Nitab4.5_0000875g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000816 2.1e-07 59.7 44 61.4
Nitab4.5_0002183g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000816 2.1e-07 59.7 44 61.4
FvH4_5g26790 Fragaria vesca HOM05D000135 ORTHO05D000816 2.7e-07 59.3 47 59.6
FAN04G2622 Fragaria x ananassa HOM05D000135 ORTHO05D000816 2.7e-07 59.3 47 59.6
FAN08G1719 Fragaria x ananassa HOM05D000135 ORTHO05D000816 2.7e-07 59.3 47 59.6
FAN13G2467 Fragaria x ananassa HOM05D000135 ORTHO05D000816 2.7e-07 59.3 47 59.6
FAN18G1887 Fragaria x ananassa HOM05D000135 ORTHO05D000816 2.7e-07 59.3 47 59.6
Nitab4.5_0007815g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 2.7e-07 59.3 46 58.7
Oeu035215.1 Olea europaea HOM05D000135 ORTHO05D000816 2.7e-07 59.3 51 54.9
Peaxi162Scf00098g00156 Petunia axillaris HOM05D000135 ORTHO05D000816 2.7e-07 59.3 45 60.0
QL02p016339 Quercus lobata HOM05D000135 ORTHO05D000816 2.7e-07 59.3 47 61.7
Solyc11g071740.2 Solanum lycopersicum HOM05D000135 ORTHO05D000816 2.7e-07 59.3 46 58.7
Sopen11g029410 Solanum pennellii HOM05D000135 ORTHO05D000816 2.7e-07 59.3 46 58.7
PGSC0003DMG400040538 Solanum tuberosum HOM05D000135 ORTHO05D000816 2.7e-07 59.3 46 58.7
PGSC0003DMG400045603 Solanum tuberosum HOM05D000135 ORTHO05D000816 2.7e-07 59.3 46 58.7
Rhsim10G0007800 Rhododendron simsii HOM05D000135 ORTHO05D000816 3.6e-07 58.9 50 58.0
RcHm_v2.0_Chr7g0217701 Rosa chinensis HOM05D000135 ORTHO05D000816 3.6e-07 58.9 47 59.6
CAN.G1463.22 Capsicum annuum HOM05D000135 ORTHO05D000816 4.7e-07 58.5 50 52.0
CAN.G742.23 Capsicum annuum HOM05D000135 ORTHO05D000816 4.7e-07 58.5 46 58.7
Nitab4.5_0002498g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 6.1e-07 58.2 46 58.7
Prupe.5G000600 Prunus persica HOM05D000135 ORTHO05D000816 6.1e-07 58.2 46 60.9
HanXRQChr15g0486921 Helianthus annuus HOM05D000135 ORTHO05D000816 8.0e-07 57.8 51 51.0
Peaxi162Scf00259g00126 Petunia axillaris HOM05D000135 ORTHO05D000816 8.0e-07 57.8 44 59.1
Atru.chr13.16 Acer truncatum HOM05D000135 ORTHO05D000816 1.0e-06 57.4 46 60.9
PGSC0003DMG400002993 Solanum tuberosum HOM05D000135 ORTHO05D000816 1.0e-06 57.4 46 54.3
QL02p016392 Quercus lobata HOM05D000135 ORTHO05D000816 1.4e-06 57.0 47 59.6
SGA_v2.0_scaffold47G17571 Striga asiatica HOM05D000135 ORTHO05D000816 1.4e-06 57.0 49 51.0
Eucgr.F03632 Eucalyptus grandis HOM05D000135 ORTHO05D000816 1.8e-06 56.6 49 53.1
Oeu000733.1 Olea europaea HOM05D000135 ORTHO05D000816 1.8e-06 56.6 43 60.5
Potri.005G259900 Populus trichocarpa HOM05D000135 ORTHO05D000816 1.8e-06 56.6 47 53.2
PGR083G0560 Punica granatum HOM05D000135 ORTHO05D000816 1.8e-06 56.6 52 57.7
QL02p016421 Quercus lobata HOM05D000135 ORTHO05D000816 1.8e-06 56.6 47 59.6
Peaxi162Scf00420g00047 Petunia axillaris HOM05D000135 ORTHO05D000816 2.3e-06 56.2 51 52.9
CAN.G473.85 Capsicum annuum HOM05D000135 ORTHO05D000816 3.0e-06 55.8 47 55.3
Haze_22895 Corylus avellana HOM05D000135 ORTHO05D000816 3.0e-06 55.8 47 57.4
HanXRQChr15g0474941 Helianthus annuus HOM05D000135 ORTHO05D000816 3.0e-06 55.8 50 56.0
Nitab4.5_0007150g0060 Nicotiana tabacum HOM05D000135 ORTHO05D000816 3.0e-06 55.8 49 55.1
Peaxi162Scf00259g00018 Petunia axillaris HOM05D000135 ORTHO05D000816 3.0e-06 55.8 44 59.1
Potri.002G001400 Populus trichocarpa HOM05D000135 ORTHO05D000816 3.0e-06 55.8 51 49.0
Sabra05G0201600 Salix brachista HOM05D000135 ORTHO05D000816 3.0e-06 55.8 47 53.2
Solyc02g094000.1 Solanum lycopersicum HOM05D000135 ORTHO05D000816 3.0e-06 55.8 47 55.3
Solyc06g073830.1 Solanum lycopersicum HOM05D000135 ORTHO05D000816 3.0e-06 55.8 44 56.8
Sopen02g038650 Solanum pennellii HOM05D000135 ORTHO05D000816 3.0e-06 55.8 47 55.3
Sopen06g030230 Solanum pennellii HOM05D000135 ORTHO05D000816 3.0e-06 55.8 44 56.8
PGSC0003DMG400005909 Solanum tuberosum HOM05D000135 ORTHO05D000816 3.0e-06 55.8 44 56.8
PGSC0003DMG400020261 Solanum tuberosum HOM05D000135 ORTHO05D000816 3.0e-06 55.8 47 55.3
Cpa.g.sc171.33 Carica papaya HOM05D000135 ORTHO05D000816 4.0e-06 55.5 59 52.5
PGSC0003DMG400002994 Solanum tuberosum HOM05D000135 ORTHO05D000816 4.0e-06 55.5 46 54.3
GSVIVG01008516001 Vitis vinifera HOM05D000135 ORTHO05D000816 4.0e-06 55.5 42 61.9
CAN.G742.5 Capsicum annuum HOM05D000135 ORTHO05D000816 5.2e-06 55.1 47 51.1
MBI03_g33916_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 5.2e-06 55.1 49 51.0
MD14G1158700 Malus domestica HOM05D000135 ORTHO05D000816 5.2e-06 55.1 51 52.9
QL03p054203 Quercus lobata HOM05D000135 ORTHO05D000816 5.2e-06 55.1 47 53.2
Solyc11g071760.3 Solanum lycopersicum HOM05D000135 ORTHO05D000816 5.2e-06 55.1 46 52.2
Sopen11g029420 Solanum pennellii HOM05D000135 ORTHO05D000816 5.2e-06 55.1 46 52.2
Sopen11g029430 Solanum pennellii HOM05D000135 ORTHO05D000816 5.2e-06 55.1 46 52.2
Cfa014171 Carpinus fangiana HOM05D000135 ORTHO05D000816 6.7e-06 54.7 47 57.4
COL.COLO4_12261 Corchorus olitorius HOM05D000135 ORTHO05D000816 6.7e-06 54.7 46 56.5
Lsat_1_v5_gn_4_185301 Lactuca sativa HOM05D000135 ORTHO05D000816 6.7e-06 54.7 51 51.0
MD06G1143500 Malus domestica HOM05D000135 ORTHO05D000816 6.7e-06 54.7 45 55.6
QL02p016429 Quercus lobata HOM05D000135 ORTHO05D000816 6.7e-06 54.7 47 55.3
Dinv14818 Davidia involucrata HOM05D000135 ORTHO05D000816 8.8e-06 54.3 47 48.9
Eucgr.B00127 Eucalyptus grandis HOM05D000135 ORTHO05D000816 8.8e-06 54.3 46 56.5
Gohir.A07G226850 Gossypium hirsutum HOM05D000135 ORTHO05D000816 8.8e-06 54.3 44 56.8
MBI01_g09380_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 8.8e-06 54.3 49 51.0


User provided reference genes

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