Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 2218.7 1117 100.0
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 2018.4 1127 90.2
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1937.5 1119 87.2
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1907.1 1117 85.0
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1875.1 1112 85.3
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1797.7 1123 80.4
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1791.9 1123 80.1
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1772.7 1133 79.6
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1738.8 959 91.7
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1599.3 1122 71.1
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1593.2 1128 71.2
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1575.5 1117 70.8
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1572.8 1117 69.9
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1560.0 1128 69.4
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1554.7 1117 69.7
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1539.2 1115 68.7
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1530.8 1117 69.7
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1515.4 1117 67.9
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1505.3 1118 68.1
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1504.6 798 95.7
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1501.5 1117 67.4
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1494.2 1118 68.1
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1483.4 1184 64.7
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1468.0 1117 66.4
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1467.6 1118 66.6
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1465.7 1117 65.7
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1458.4 1124 66.7
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1456.0 841 86.1
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1446.0 1117 65.2
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1445.3 1125 66.3
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1442.2 1118 65.2
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1441.4 1117 65.0
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1439.9 1118 64.0
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1439.9 1117 64.0
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1437.9 1127 64.5
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1434.1 1117 64.7
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1426.4 1184 61.8
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1422.9 1117 64.3
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1422.9 1120 65.3
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1417.1 1117 63.9
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1409.4 1139 63.0
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1405.2 1119 65.1
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1401.3 1163 64.0
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1400.6 1117 62.8
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1400.2 1150 62.3
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1399.4 1118 63.0
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1399.4 1120 63.1
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1399.0 1117 65.3
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1394.0 1119 62.9
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1392.9 1118 63.3
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1392.5 1117 65.0
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1388.6 1123 62.2
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1384.0 1118 62.7
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1383.2 1158 62.8
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1377.8 1075 65.9
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1370.1 1118 62.5
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1369.4 1119 61.9
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1367.8 1115 62.4
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1366.3 1119 61.8
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1357.0 1127 62.6
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1354.0 1132 61.4
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1354.0 1123 62.8
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1351.7 1117 61.5
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1346.3 1140 62.5
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1337.4 1090 63.0
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1333.5 1090 62.8
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1331.2 1123 60.7
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1328.5 1175 58.1
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1327.0 1117 61.1
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1325.5 915 71.8
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1325.1 956 70.1
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1323.9 1122 60.2
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1321.2 956 70.2
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1320.4 1122 61.7
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1314.3 1091 62.1
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1308.5 1122 60.7
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1300.8 1117 60.6
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1298.1 1126 60.2
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1297.3 1125 60.4
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1297.3 1121 60.5
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1297.3 1125 60.4
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1295.8 1115 60.4
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1294.6 1115 60.9
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1293.9 1123 59.1
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1290.0 1117 58.7
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1286.6 1116 60.3
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1283.9 1116 59.9
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1281.9 1114 60.5
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1278.5 1115 60.6
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1276.5 1201 55.6
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1263.8 1120 60.0
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1258.8 1021 62.6
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1258.4 1122 59.6
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1258.0 1194 55.1
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1246.9 1116 59.1
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1239.9 1006 64.5
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1236.1 1139 57.9
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1232.2 1122 58.7
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1223.8 1130 57.9
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1212.6 1017 60.7
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1209.5 1169 55.0
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1203.7 1115 55.6
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1181.4 795 73.8
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 0.0e+00 1165.6 1127 54.2
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1154.4 956 63.6
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1119.8 906 62.1
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 0.0e+00 1106.3 1088 54.4
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 5.8e-310 1067.8 734 70.2
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 8.6e-306 1053.9 1146 50.3
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 5.1e-282 974.9 647 72.8
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 6.7e-282 974.5 1039 51.2
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 4.3e-281 971.8 1132 47.3
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 3.3e-265 919.1 1152 45.2
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 1.7e-261 906.7 1012 49.6
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 5.5e-244 848.6 1106 43.0
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 6.1e-235 818.5 821 52.7
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 8.9e-202 708.4 986 42.5
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 4.3e-188 662.9 538 65.4
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 6.0e-182 642.5 1111 37.5
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 6.4e-168 595.9 421 69.8
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 5.3e-162 576.2 1132 35.4
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 6.0e-158 562.8 448 62.5
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 6.1e-118 429.9 331 63.1
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 1.5e-108 398.7 322 61.8
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 5.2e-101 373.6 234 80.3
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 1.6e-97 362.1 1175 26.6
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 1.1e-82 312.8 526 38.8
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.9e-71 275.4 378 42.1
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 5.8e-68 263.8 377 41.4
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.5e-65 254.6 255 55.3
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.7e-64 252.3 261 53.3
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 7.1e-58 230.3 231 50.2
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.5e-55 221.9 223 53.8
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 4.3e-55 221.1 209 55.5
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 9.3e-50 203.4 211 51.2
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.6e-44 185.3 223 48.0
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.6e-44 185.3 223 48.0
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.6e-44 185.3 223 48.0
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 3.4e-44 184.9 375 33.9
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.0e-43 183.3 223 47.5
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.2e-43 182.2 223 47.5
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 5.1e-40 171.0 236 43.6
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 4.3e-39 167.9 241 46.9
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 7.6e-36 157.1 143 55.2
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.2e-35 155.6 223 43.9
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.1e-34 153.3 81 91.4
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 7.9e-33 147.1 248 37.1
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 7.9e-33 147.1 248 37.1
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 1.6e-30 139.4 248 36.7
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 2.8e-30 138.7 358 29.3
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.1e-23 116.7 97 61.9
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.5e-23 116.3 73 74.0
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 8.2e-22 110.5 300 29.3
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 2.9e-19 102.1 76 59.2
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 6.1e-17 94.4 130 42.3
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 1.0e-16 93.6 58 70.7
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 9.7e-15 87.0 55 72.7


User provided reference genes

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