Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G081800 Glycine max HOM05D002521 ORTHO05D002872 6.4e-23 109.8 51 100.0
Glyma.08G111600 Glycine max HOM05D002521 ORTHO05D002872 8.7e-12 72.8 44 77.3
Glyma.05G153900 Glycine max HOM05D002521 ORTHO05D002872 1.5e-11 72.0 44 77.3
Phvul.003G291100 Phaseolus vulgaris HOM05D002521 ORTHO05D002872 3.3e-11 70.9 44 75.0
VMungo0251G2568 Vigna mungo HOM05D002521 ORTHO05D002872 3.3e-11 70.9 44 75.0
Psat7g074200 Pisum sativum HOM05D002521 ORTHO05D002872 1.3e-10 68.9 44 72.7
TPR.G11808 Trifolium pratense HOM05D002521 ORTHO05D002872 1.3e-10 68.9 44 72.7
Ca_17970_v3 Cicer arietinum L. HOM05D002521 ORTHO05D002872 1.6e-10 68.6 44 72.7
Lj4g0000869 Lotus japonicus HOM05D002521 ORTHO05D002872 4.8e-10 67.0 42 73.8
arahy.Tifrunner.gnm1.ann1.6KXF36 Arachis hypogaea HOM05D002521 ORTHO05D002872 6.2e-10 66.6 44 70.5
arahy.Tifrunner.gnm1.ann1.IA90BR Arachis hypogaea HOM05D002521 ORTHO05D002872 6.2e-10 66.6 44 70.5
Lalb_Chr12g0205511 Lupinus albus HOM05D002521 ORTHO05D002872 1.4e-09 65.5 44 68.2
Medtr8g085300 Medicago truncatula HOM05D002521 ORTHO05D002872 2.4e-09 64.7 44 68.2
Haze_11619 Corylus avellana HOM05D002521 ORTHO05D002872 6.9e-09 63.2 44 65.9
MD04G1012300 Malus domestica HOM05D002521 ORTHO05D002872 6.9e-09 63.2 44 65.9
TWI09G1504 Tripterygium wilfordii HOM05D002521 ORTHO05D002872 6.9e-09 63.2 44 65.9
Potri.001G316700 Populus trichocarpa HOM05D002521 ORTHO05D002872 1.5e-08 62.0 44 63.6
Cfa014908 Carpinus fangiana HOM05D002521 ORTHO05D002872 2.6e-08 61.2 44 63.6
Hma1.2p1_0187F.1_g082370 Hydrangea macrophylla HOM05D002521 ORTHO05D002872 2.6e-08 61.2 44 65.9
ClCG06G008070 Citrullus lanatus HOM05D002521 ORTHO05D002872 3.4e-08 60.8 44 61.4
MELO3C020360.2 Cucumis melo HOM05D002521 ORTHO05D002872 3.4e-08 60.8 44 61.4
CsaV3_2G011120 Cucumis sativus L. HOM05D002521 ORTHO05D002872 3.4e-08 60.8 44 61.4
Duzib268G0317 Durio zibethinus HOM05D002521 ORTHO05D002872 3.4e-08 60.8 44 63.6
Medtr3g083840 Medicago truncatula HOM05D002521 ORTHO05D002872 3.4e-08 60.8 44 61.4
Lalb_Chr13g0294871 Lupinus albus HOM05D002521 ORTHO05D002872 4.4e-08 60.5 44 63.6
CSS0022307 Camellia sinensis var. sinensis HOM05D002521 ORTHO05D002872 5.8e-08 60.1 44 65.9
Cpa.g.sc83.12 Carica papaya HOM05D002521 ORTHO05D002872 5.8e-08 60.1 44 61.4
Ca_16393_v3 Cicer arietinum L. HOM05D000127 ORTHO05D000243 5.8e-08 60.1 44 61.4
DCAR_024463 Daucus carota HOM05D002521 ORTHO05D002872 5.8e-08 60.1 44 63.6
Lj6g0007266 Lotus japonicus HOM05D002521 ORTHO05D002872 7.6e-08 59.7 44 63.6
Sabra17G0048600 Salix brachista HOM05D002521 ORTHO05D002872 7.6e-08 59.7 44 61.4
Sabra17G0050300 Salix brachista HOM05D002521 ORTHO05D002872 7.6e-08 59.7 44 61.4
THA.LOC104816027 Tarenaya hassleriana HOM05D002521 ORTHO05D002872 7.6e-08 59.7 44 61.4
Actinidia11448 Actinidia chinensis HOM05D002521 ORTHO05D002872 9.9e-08 59.3 44 63.6
Actinidia27493 Actinidia chinensis HOM05D002521 ORTHO05D002872 9.9e-08 59.3 44 63.6
Actinidia28988 Actinidia chinensis HOM05D002521 ORTHO05D002872 9.9e-08 59.3 44 63.6
Dinv38216 Davidia involucrata HOM05D002521 ORTHO05D002872 9.9e-08 59.3 44 63.6
Manes.03G146500 Manihot esculenta HOM05D002521 ORTHO05D002872 9.9e-08 59.3 42 61.9
Sed0012712 Sechium edule HOM05D002521 ORTHO05D002872 9.9e-08 59.3 44 61.4
Dinv27221 Davidia involucrata HOM05D002521 ORTHO05D002872 1.3e-07 58.9 44 63.6
MD13G1283700 Malus domestica HOM05D002521 ORTHO05D002872 1.3e-07 58.9 44 61.4
Psat0s3599g0080 Pisum sativum HOM05D002521 ORTHO05D002872 1.3e-07 58.9 44 61.4
Thecc.04G200600 Theobroma cacao HOM05D002521 ORTHO05D002872 1.3e-07 58.9 44 61.4
TAR363G0001 Trochodendron aralioides HOM05D002521 ORTHO05D002872 1.3e-07 58.9 44 63.6
AL1G14550 Arabidopsis lyrata HOM05D002521 ORTHO05D002872 1.7e-07 58.5 44 63.6
AT1G04830 Arabidopsis thaliana HOM05D002521 ORTHO05D002872 1.7e-07 58.5 44 63.6
BcaC02g09583 Brassica carinata HOM05D002521 ORTHO05D002872 1.7e-07 58.5 44 63.6
BolC4t26013H Brassica oleracea HOM05D002521 ORTHO05D002872 1.7e-07 58.5 44 63.6
Carub.0001s0407 Capsella rubella HOM05D002521 ORTHO05D002872 1.7e-07 58.5 44 63.6
CARHR004220 Cardamine hirsuta HOM05D002521 ORTHO05D002872 1.7e-07 58.5 44 63.6
ECA238G0003 Erigeron canadensis HOM05D002521 ORTHO05D002872 1.7e-07 58.5 44 63.6
Eucgr.H02770 Eucalyptus grandis HOM05D002521 ORTHO05D002872 1.7e-07 58.5 44 63.6
Thhalv10007609m.g Eutrema salsugineum HOM05D002521 ORTHO05D002872 1.7e-07 58.5 44 63.6
Lalb_Chr23g0278441 Lupinus albus HOM05D002521 ORTHO05D002872 1.7e-07 58.5 44 56.8
Sp1g03670 Schrenkiella parvula HOM05D002521 ORTHO05D002872 1.7e-07 58.5 44 63.6
Oeu055769.1 Olea europaea HOM05D002521 ORTHO05D002872 2.2e-07 58.2 44 59.1
Gohir.D02G025300 Gossypium hirsutum HOM05D002521 ORTHO05D002872 2.9e-07 57.8 44 61.4
Gorai.005G031200 Gossypium raimondii HOM05D002521 ORTHO05D002872 2.9e-07 57.8 44 61.4
Oeu049039.1 Olea europaea HOM05D002521 ORTHO05D002872 2.9e-07 57.8 44 59.1
PGR083G2515 Punica granatum HOM05D002521 ORTHO05D002872 2.9e-07 57.8 44 61.4
Sed0012786 Sechium edule HOM05D002521 ORTHO05D002872 2.9e-07 57.8 44 56.8
BolC4t25798H Brassica oleracea HOM05D002521 ORTHO05D002872 3.8e-07 57.4 44 59.1
COL.COLO4_20169 Corchorus olitorius HOM05D002521 ORTHO05D002872 3.8e-07 57.4 44 59.1
Atru.chr4.1660 Acer truncatum HOM05D002521 ORTHO05D002872 4.9e-07 57.0 42 59.5
Aa31LG9G3920 Aethionema arabicum HOM05D002521 ORTHO05D002872 4.9e-07 57.0 44 59.1
AL7G42770 Arabidopsis lyrata HOM05D002521 ORTHO05D002872 4.9e-07 57.0 44 59.1
BcaB03g13470 Brassica carinata HOM05D002521 ORTHO05D002872 4.9e-07 57.0 44 61.4
A04p08460 Brassica napus HOM05D002521 ORTHO05D002872 4.9e-07 57.0 44 59.1
A08p36690 Brassica napus HOM05D001191 ORTHO05D000979 4.9e-07 57.0 44 61.4
C04p42200 Brassica napus HOM05D002521 ORTHO05D002872 4.9e-07 57.0 44 59.1
BolC3t14773H Brassica oleracea HOM05D002521 ORTHO05D016065 4.9e-07 57.0 44 61.4
BolC8t46957H Brassica oleracea HOM05D001191 ORTHO05D000979 4.9e-07 57.0 44 61.4
BraA04t16536Z Brassica rapa HOM05D002521 ORTHO05D002872 4.9e-07 57.0 44 59.1
BraA08t35572Z Brassica rapa HOM05D001191 ORTHO05D000979 4.9e-07 57.0 44 61.4
BraA10t42598Z Brassica rapa HOM05D002521 ORTHO05D002872 4.9e-07 57.0 44 61.4
Cc03_g07990 Coffea canephora HOM05D002521 ORTHO05D002872 4.9e-07 57.0 44 61.4
Thhalv10025184m.g Eutrema salsugineum HOM05D002521 ORTHO05D002872 4.9e-07 57.0 44 59.1
FAN07G2651 Fragaria x ananassa HOM05D002521 ORTHO05D002872 4.9e-07 57.0 42 59.5
FAN17G2246 Fragaria x ananassa HOM05D002521 ORTHO05D002872 4.9e-07 57.0 42 59.5
FAN22G1042 Fragaria x ananassa HOM05D002521 ORTHO05D002872 4.9e-07 57.0 42 59.5
Gohir.A02G021100 Gossypium hirsutum HOM05D002521 ORTHO05D002872 4.9e-07 57.0 44 61.4
Lsat_1_v5_gn_2_46200 Lactuca sativa HOM05D002521 ORTHO05D002872 4.9e-07 57.0 46 60.9
THA.LOC104808707 Tarenaya hassleriana HOM05D002521 ORTHO05D002872 4.9e-07 57.0 44 61.4
Actinidia35850 Actinidia chinensis HOM05D002521 ORTHO05D002872 6.4e-07 56.6 44 63.6
FvH4_4g13770 Fragaria vesca HOM05D002521 ORTHO05D002872 6.4e-07 56.6 42 59.5
FAN12G0343 Fragaria x ananassa HOM05D002521 ORTHO05D002872 6.4e-07 56.6 42 59.5
RcHm_v2.0_Chr4g0414611 Rosa chinensis HOM05D002521 ORTHO05D002872 6.4e-07 56.6 42 59.5
SalBow3G0327 Salvia bowleyana HOM05D002521 ORTHO05D002872 6.4e-07 56.6 44 59.1
vmacro00461 Vaccinium macrocarpon HOM05D002521 ORTHO05D002872 6.4e-07 56.6 44 61.4
GSVIVG01020911001 Vitis vinifera HOM05D002521 ORTHO05D002872 6.4e-07 56.6 42 64.3
Aqoxy2G03905 Aquilegia oxysepala HOM05D002521 ORTHO05D002872 8.4e-07 56.2 46 60.9
BcaC07g36878 Brassica carinata HOM05D002521 ORTHO05D002872 8.4e-07 56.2 44 61.4
C08p01490 Brassica napus HOM05D001191 ORTHO05D000979 8.4e-07 56.2 44 61.4
CAN.G1333.10 Capsicum annuum HOM05D002521 ORTHO05D002872 8.4e-07 56.2 44 59.1
Ciclev10004939m.g Citrus clementina HOM05D002521 ORTHO05D002872 8.4e-07 56.2 42 61.9
Prupe.1G158400 Prunus persica HOM05D002521 ORTHO05D002872 8.4e-07 56.2 44 56.8
Rhsim02G0059700 Rhododendron simsii HOM05D002521 ORTHO05D002872 8.4e-07 56.2 44 59.1
Rhsim09G0058100 Rhododendron simsii HOM05D002521 ORTHO05D002872 8.4e-07 56.2 44 61.4
Sp7g11510 Schrenkiella parvula HOM05D002521 ORTHO05D002872 8.4e-07 56.2 44 56.8
vmacro15550 Vaccinium macrocarpon HOM05D002521 ORTHO05D002872 8.4e-07 56.2 44 59.1
Duzib151G0193 Durio zibethinus HOM05D002521 ORTHO05D002872 1.1e-06 55.8 44 59.1
Migut.N00401 Erythranthe guttata HOM05D002521 ORTHO05D002872 1.1e-06 55.8 44 59.1
Nitab4.5_0000401g0060 Nicotiana tabacum HOM05D002521 ORTHO05D002872 1.1e-06 55.8 44 59.1
Nitab4.5_0006210g0030 Nicotiana tabacum HOM05D002521 ORTHO05D002872 1.1e-06 55.8 44 59.1
Zm00001eb365390 Zea mays HOM05D002521 ORTHO05D002872 1.1e-06 55.8 44 59.1
Aa31LG1G19840 Aethionema arabicum HOM05D002521 ORTHO05D002872 1.4e-06 55.5 44 59.1
BcaC02g09394 Brassica carinata HOM05D002521 ORTHO05D002872 1.4e-06 55.5 44 59.1
Gohir.A03G094900 Gossypium hirsutum HOM05D002521 ORTHO05D002872 1.4e-06 55.5 42 61.9
Gorai.005G129700 Gossypium raimondii HOM05D002521 ORTHO05D002872 1.4e-06 55.5 42 61.9
HanXRQChr01g0022431 Helianthus annuus HOM05D002521 ORTHO05D002872 1.4e-06 55.5 44 59.1
Lj6A528G36 Lonicera japonica HOM05D002521 ORTHO05D002872 1.4e-06 55.5 44 61.4
MBI11_g07437_MAGBIO Magnolia biondii HOM05D002521 ORTHO05D002872 2.4e-06 54.7 42 59.5
PSO017G2637 Papaver somniferum HOM05D002521 ORTHO05D002872 2.4e-06 54.7 42 59.5
PSO063G4834 Papaver somniferum HOM05D002521 ORTHO05D002872 2.4e-06 54.7 42 59.5
SGA_v2.0_scaffold128G34110 Striga asiatica HOM05D002521 ORTHO05D002872 2.4e-06 54.7 44 59.1
AT4G13730 Arabidopsis thaliana HOM05D002521 ORTHO05D002872 3.2e-06 54.3 44 56.8
CARHR219520 Cardamine hirsuta HOM05D002521 ORTHO05D002872 3.2e-06 54.3 44 56.8
Lsat_1_v5_gn_6_61121 Lactuca sativa HOM05D002521 ORTHO05D002872 3.2e-06 54.3 44 59.1
QL06p025294 Quercus lobata HOM05D002521 ORTHO05D002872 3.2e-06 54.3 44 56.8
Solyc09g092070.4 Solanum lycopersicum HOM05D002521 ORTHO05D002872 3.2e-06 54.3 44 56.8
Sopen09g034940 Solanum pennellii HOM05D002521 ORTHO05D002872 3.2e-06 54.3 44 56.8
PGSC0003DMG400026413 Solanum tuberosum HOM05D002521 ORTHO05D002872 3.2e-06 54.3 44 56.8
C03p23840 Brassica napus HOM05D002521 ORTHO05D016065 4.2e-06 53.9 44 59.1
CDE02G2497 Ceratophyllum demersum HOM05D002521 ORTHO05D002872 4.2e-06 53.9 44 56.8
ECA233G2105 Erigeron canadensis HOM05D002521 ORTHO05D002872 4.2e-06 53.9 44 59.1
DCAR_026625 Daucus carota HOM05D002521 ORTHO05D002872 5.4e-06 53.5 44 54.5
Migut.G00712 Erythranthe guttata HOM05D002521 ORTHO05D002872 5.4e-06 53.5 44 59.1
Lj3A402G9 Lonicera japonica HOM05D002521 ORTHO05D002872 5.4e-06 53.5 44 59.1
Sc13g0000220 Simmondsia chinensis HOM05D002521 ORTHO05D002872 5.4e-06 53.5 44 56.8
THA.LOC104801023 Tarenaya hassleriana HOM05D002521 ORTHO05D002872 5.4e-06 53.5 44 56.8
Zm00001eb420710 Zea mays HOM05D002521 ORTHO05D002872 5.4e-06 53.5 44 56.8
BcaB02g08655 Brassica carinata HOM05D002521 ORTHO05D002872 7.1e-06 53.1 44 54.5
Carub.0007s2872 Capsella rubella HOM05D002521 ORTHO05D002872 7.1e-06 53.1 44 54.5
CiPaw.01G119700 Carya illinoinensis HOM05D002521 ORTHO05D002872 7.1e-06 53.1 42 57.1
CiPaw.02G065700 Carya illinoinensis HOM05D002521 ORTHO05D002872 7.1e-06 53.1 42 54.8
Eucgr.H00044 Eucalyptus grandis HOM05D002521 ORTHO05D002872 7.1e-06 53.1 42 57.1
A10p03210 Brassica napus HOM05D001191 ORTHO05D000979 9.3e-06 52.8 44 56.8
HanXRQChr13g0420951 Helianthus annuus HOM05D002521 ORTHO05D002872 9.3e-06 52.8 44 56.8
Nn1g07934 Nelumbo nucifera HOM05D002521 ORTHO05D002872 9.3e-06 52.8 44 56.8
Peaxi162Scf00047g00424 Petunia axillaris HOM05D002521 ORTHO05D002872 9.3e-06 52.8 44 54.5
Peaxi162Scf00753g00336 Petunia axillaris HOM05D002521 ORTHO05D002872 9.3e-06 52.8 44 54.5


User provided reference genes

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