Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G075100 Glycine max HOM05D005860 ORTHO05D006977 1.3e-191 673.3 474 100.0
Glyma.05G075600 Glycine max HOM05D005860 ORTHO05D006977 2.8e-157 559.3 482 86.3
Phvul.004G055500 Phaseolus vulgaris HOM05D005860 ORTHO05D006977 2.9e-146 522.7 468 82.3
VMungo0464G0018 Vigna mungo HOM05D005860 ORTHO05D006977 2.3e-130 469.9 447 81.0
Phvul.004G147000 Phaseolus vulgaris HOM05D005860 ORTHO05D006977 1.9e-129 466.8 471 78.8
Lj2g0013553 Lotus japonicus HOM05D005860 ORTHO05D006977 7.3e-121 438.3 475 74.3
QL02p072028 Quercus lobata HOM05D005860 ORTHO05D006977 6.8e-119 431.8 448 73.7
arahy.Tifrunner.gnm1.ann1.SB3XQV Arachis hypogaea HOM05D005860 ORTHO05D006977 1.1e-116 424.5 471 73.2
TPR.G5727 Trifolium pratense HOM05D001503 ORTHO05D003820 2.4e-116 423.3 472 68.9
Psat1g161720 Pisum sativum HOM05D005860 ORTHO05D006977 2.1e-115 420.2 475 69.7
CiPaw.04G034700 Carya illinoinensis HOM05D005860 ORTHO05D006977 1.0e-114 417.9 449 67.7
arahy.Tifrunner.gnm1.ann1.WZ54PF Arachis hypogaea HOM05D005860 ORTHO05D006977 2.3e-114 416.8 471 72.4
Medtr2g034600 Medicago truncatula HOM05D005860 ORTHO05D006977 3.1e-111 406.4 481 66.9
PGR083G1804 Punica granatum HOM05D005860 ORTHO05D006977 2.3e-106 390.2 455 56.5
Lalb_Chr02g0157831 Lupinus albus HOM05D005860 ORTHO05D006977 5.1e-106 389.0 479 69.5
Eucgr.J02311 Eucalyptus grandis HOM05D005860 ORTHO05D006977 1.8e-103 380.6 451 60.8
Cpa.g.sc171.37 Carica papaya HOM05D005860 ORTHO05D006977 2.4e-103 380.2 448 68.5
Gohir.A10G079300 Gossypium hirsutum HOM05D005860 ORTHO05D006977 1.9e-100 370.5 429 67.4
Atru.chr4.382 Acer truncatum HOM05D005860 ORTHO05D006977 4.2e-100 369.4 467 62.7
Cc02_g00900 Coffea canephora HOM05D005860 ORTHO05D006977 4.2e-100 369.4 462 63.6
COL.COLO4_03595 Corchorus olitorius HOM05D005860 ORTHO05D006977 4.2e-100 369.4 451 69.6
Potri.017G067600 Populus trichocarpa HOM05D005860 ORTHO05D006977 1.2e-99 367.9 460 64.8
Duzib116G0811 Durio zibethinus HOM05D005860 ORTHO05D006977 2.1e-99 367.1 447 65.3
Nn4g22386 Nelumbo nucifera HOM05D005860 ORTHO05D006977 3.0e-98 363.2 383 66.6
Sabra17G0063700 Salix brachista HOM05D005860 ORTHO05D006977 3.0e-98 363.2 444 64.0
Gorai.011G077700 Gossypium raimondii HOM05D005860 ORTHO05D006977 3.9e-98 362.8 431 66.1
TAR622G0256 Trochodendron aralioides HOM05D005860 ORTHO05D006977 1.5e-97 360.9 448 61.4
Manes.15G158200 Manihot esculenta HOM05D005860 ORTHO05D006977 1.9e-97 360.5 470 67.0
Glyma.09G171700 Glycine max HOM05D005860 ORTHO05D006977 4.3e-97 359.4 223 83.9
MD17G1015100 Malus domestica HOM05D005860 ORTHO05D006977 5.6e-97 359.0 449 71.7
Hma1.2p1_1219F.1_g267900 Hydrangea macrophylla HOM05D005860 ORTHO05D006977 1.2e-94 351.3 463 60.7
GSVIVG01001819001 Vitis vinifera HOM05D005860 ORTHO05D006977 2.0e-94 350.5 448 64.7
Haze_14838 Corylus avellana HOM05D005860 ORTHO05D006977 3.4e-94 349.7 483 60.0
Actinidia30891 Actinidia chinensis HOM05D005860 ORTHO05D006977 5.8e-94 349.0 464 67.9
Ciclev10011572m.g Citrus clementina HOM05D005860 ORTHO05D006977 5.8e-94 349.0 450 62.4
SalBow1G3206 Salvia bowleyana HOM05D005860 ORTHO05D006977 5.8e-94 349.0 486 65.0
SalBow7G2829 Salvia bowleyana HOM05D005860 ORTHO05D006977 5.8e-94 349.0 486 65.0
CSS0028115 Camellia sinensis var. sinensis HOM05D005860 ORTHO05D006977 7.6e-94 348.6 458 65.7
CSS0015596 Camellia sinensis var. sinensis HOM05D005860 ORTHO05D006977 1.3e-93 347.8 487 63.4
CAN.G473.79 Capsicum annuum HOM05D005860 ORTHO05D006977 4.9e-93 345.9 485 60.6
Oeu058768.1 Olea europaea HOM05D005860 ORTHO05D006977 8.4e-93 345.1 460 61.3
TAR629G2046 Trochodendron aralioides HOM05D005860 ORTHO05D006977 1.1e-92 344.7 472 58.9
Sed0023405 Sechium edule HOM05D005860 ORTHO05D006977 1.9e-92 344.0 447 66.7
CsaV3_6G042570 Cucumis sativus L. HOM05D005860 ORTHO05D006977 7.9e-91 338.6 446 66.6
Dinv19535 Davidia involucrata HOM05D005860 ORTHO05D006977 6.7e-90 335.5 447 60.4
ClCG01G016270 Citrullus lanatus HOM05D005860 ORTHO05D006977 1.5e-89 334.3 446 66.1
MELO3C007497.2 Cucumis melo HOM05D005860 ORTHO05D006977 2.5e-89 333.6 437 66.4
FvH4_6g53060 Fragaria vesca HOM05D005860 ORTHO05D006977 7.4e-89 332.0 447 69.4
RcHm_v2.0_Chr2g0174841 Rosa chinensis HOM05D005860 ORTHO05D006977 7.4e-89 332.0 449 68.8
PSO017G5933 Papaver somniferum HOM05D005860 ORTHO05D006977 9.6e-89 331.6 470 61.5
MSTRG.15567 Avicennia marina HOM05D005860 ORTHO05D006977 1.6e-88 330.9 459 64.1
PSO478G3943 Papaver somniferum HOM05D005860 ORTHO05D006977 1.6e-88 330.9 470 60.2
PGSC0003DMG400020220 Solanum tuberosum HOM05D005860 ORTHO05D006977 1.6e-88 330.9 485 59.4
Lj7A609T51 Lonicera japonica HOM05D005860 ORTHO05D006977 2.1e-88 330.5 456 59.6
THA.LOC104825612 Tarenaya hassleriana HOM05D005860 ORTHO05D006977 2.1e-88 330.5 460 60.4
Nitab4.5_0009757g0020 Nicotiana tabacum HOM05D005860 ORTHO05D006977 2.8e-88 330.1 455 61.3
Nitab4.5_0002887g0110 Nicotiana tabacum HOM05D005860 ORTHO05D006977 8.1e-88 328.6 484 59.3
Sopen02g038590 Solanum pennellii HOM05D005860 ORTHO05D006977 1.1e-87 328.2 457 60.8
FAN05G4081 Fragaria x ananassa HOM05D005860 ORTHO05D006977 1.4e-87 327.8 447 68.5
Peaxi162Scf00420g00442 Petunia axillaris HOM05D005860 ORTHO05D006977 1.4e-87 327.8 486 58.2
Aqoxy5G03469 Aquilegia oxysepala HOM05D005860 ORTHO05D006977 2.4e-87 327.0 468 62.6
Migut.K01447 Erythranthe guttata HOM05D005860 ORTHO05D006977 2.4e-87 327.0 485 57.7
Solyc02g093940.3 Solanum lycopersicum HOM05D005860 ORTHO05D006977 5.3e-87 325.9 457 60.6
FAN09G0694 Fragaria x ananassa HOM05D005860 ORTHO05D006977 6.9e-87 325.5 447 68.7
PSO782G4049 Papaver somniferum HOM05D005860 ORTHO05D006977 6.9e-87 325.5 486 56.0
Sc16g0003100 Simmondsia chinensis HOM05D005860 ORTHO05D006977 2.0e-86 323.9 481 60.5
TWI56G1326 Tripterygium wilfordii HOM05D005860 ORTHO05D006977 3.8e-85 319.7 448 63.2
CANSAT64G0040 Cannabis sativa HOM05D005860 ORTHO05D006977 6.4e-85 318.9 456 57.9
ATR0686G114 Amborella trichopoda HOM05D005860 ORTHO05D006977 1.9e-84 317.4 446 58.1
DCAR_021767 Daucus carota HOM05D005860 ORTHO05D006977 9.3e-84 315.1 438 66.4
Hund24045 Selenicereus undatus HOM05D005860 ORTHO05D006977 1.2e-83 314.7 457 61.1
PSO063G3212 Papaver somniferum HOM05D005860 ORTHO05D006977 1.6e-83 314.3 445 57.5
Ah.03g142080 Amaranthus hybridus HOM05D005860 ORTHO05D006977 3.0e-82 310.1 434 65.7
Thecc.08G160800 Theobroma cacao HOM05D005860 ORTHO05D006977 3.0e-82 310.1 384 68.2
EL10Ac1g02122 Beta vulgaris HOM05D005860 ORTHO05D006977 3.9e-82 309.7 439 63.3
CDE09G0687 Ceratophyllum demersum HOM05D005860 ORTHO05D006977 3.3e-81 306.6 450 60.2
CiPaw.01G128900 Carya illinoinensis HOM05D005860 ORTHO05D006977 1.6e-80 304.3 447 65.3
FAN14G2391 Fragaria x ananassa HOM05D005860 ORTHO05D006977 4.8e-80 302.8 449 54.6
Sed0015041 Sechium edule HOM05D005860 ORTHO05D006977 1.4e-79 301.2 447 54.6
AL7G41520 Arabidopsis lyrata HOM05D005860 ORTHO05D006977 1.8e-79 300.8 457 56.7
AUR62043070 Chenopodium quinoa HOM05D005860 ORTHO05D006977 5.8e-78 295.8 435 63.4
Thhalv10025001m.g Eutrema salsugineum HOM05D005860 ORTHO05D006977 1.3e-77 294.7 454 57.0
Sp7g12700 Schrenkiella parvula HOM05D005860 ORTHO05D006977 1.7e-77 294.3 460 56.3
A01p23060 Brassica napus HOM05D005860 ORTHO05D006977 6.5e-77 292.4 464 55.8
BraA01t02219Z Brassica rapa HOM05D005860 ORTHO05D006977 6.5e-77 292.4 459 56.6
SGA_v2.0_scaffold7G03541 Striga asiatica HOM05D005860 ORTHO05D006977 6.5e-77 292.4 440 55.5
Carub.0007s2760 Capsella rubella HOM05D005860 ORTHO05D006977 8.4e-77 292.0 457 55.6
BcaNung00353 Brassica carinata HOM05D005860 ORTHO05D006977 4.2e-76 289.7 462 55.8
AUR62032474 Chenopodium quinoa HOM05D005860 ORTHO05D006977 7.1e-76 288.9 435 62.1
BcaC09g50132 Brassica carinata HOM05D005860 ORTHO05D006977 2.1e-75 287.3 463 55.5
ECA232G2764 Erigeron canadensis HOM05D005860 ORTHO05D006977 1.0e-74 285.0 458 56.6
AT4G14605 Arabidopsis thaliana HOM05D005860 ORTHO05D006977 1.3e-74 284.6 457 55.4
CARHR220830 Cardamine hirsuta HOM05D005860 ORTHO05D006977 2.3e-74 283.9 454 55.9
C01p28690 Brassica napus HOM05D005860 ORTHO05D006977 5.1e-74 282.7 462 55.2
BolC1t02795H Brassica oleracea HOM05D005860 ORTHO05D006977 5.1e-74 282.7 462 55.2
Lju41A50T54 Lonicera japonica HOM05D005860 ORTHO05D006977 8.7e-74 282.0 476 54.8
HanXRQChr15g0486891 Helianthus annuus HOM05D005860 ORTHO05D006977 1.6e-72 277.7 460 57.0
unitig_0.g543 Utricularia gibba HOM05D005860 ORTHO05D006977 1.4e-71 274.6 466 54.3
Aa31LG9G2730 Aethionema arabicum HOM05D005860 ORTHO05D006977 2.4e-71 273.9 459 54.9
Gohir.D10G072200 Gossypium hirsutum HOM05D005860 ORTHO05D006977 2.4e-71 273.9 270 74.8
vmacro18326 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 1.2e-70 271.6 450 53.8
Rhsim08G0044500 Rhododendron simsii HOM05D005860 ORTHO05D006977 9.4e-68 261.9 474 42.8
Rhsim08G0044700 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.5e-65 254.6 457 46.0
Prupe.3G302700 Prunus persica HOM05D005860 ORTHO05D006977 2.5e-65 253.8 358 71.2
Rhsim08G0044400 Rhododendron simsii HOM05D005860 ORTHO05D006977 9.1e-63 245.4 426 54.5
Oeu050423.1 Olea europaea HOM05D005860 ORTHO05D006977 2.2e-61 240.7 213 61.5
Zm00001eb246440 Zea mays HOM05D005860 ORTHO05D006977 3.8e-61 240.0 475 47.8
Rhsim08G0045000 Rhododendron simsii HOM05D005860 ORTHO05D006977 7.2e-60 235.7 492 51.2
Cfa015733 Carpinus fangiana HOM05D005860 ORTHO05D006977 7.7e-46 189.1 154 64.3
Glyma.09G171766 Glycine max HOM05D005860 ORTHO05D006977 1.3e-45 188.3 176 85.8
Haze_00763 Corylus avellana HOM05D005860 ORTHO05D006977 1.5e-44 184.9 353 46.7
HPP92_024250 Vanilla planifolia HOM05D005860 ORTHO05D006977 4.4e-41 173.3 355 52.1
Lsat_1_v5_gn_4_185440 Lactuca sativa HOM05D005860 ORTHO05D006977 1.3e-40 171.8 368 57.3
Mapoly0029s0044 Marchantia polymorpha HOM05D005860 ORTHO05D006977 2.4e-39 167.5 415 45.5
HPP92_024230 Vanilla planifolia HOM05D005860 ORTHO05D006977 6.5e-37 159.5 322 54.3
TAR374G0650 Trochodendron aralioides HOM05D005860 ORTHO05D006977 4.2e-36 156.8 298 36.9
ATR0686G162 Amborella trichopoda HOM05D005860 ORTHO05D006977 1.6e-35 154.8 360 35.6
Migut.C00523 Erythranthe guttata HOM05D005860 ORTHO05D006977 6.1e-35 152.9 113 71.7
Rhsim08G0044900 Rhododendron simsii HOM05D005860 ORTHO05D006977 6.8e-34 149.4 373 40.2
Pp3c9_18330 Physcomitrium patens HOM05D005860 ORTHO05D006977 5.7e-33 146.4 426 48.4
FAN14G0528 Fragaria x ananassa HOM05D005860 ORTHO05D006977 7.0e-31 139.4 271 62.7
Os02g0602400 Oryza sativa ssp. japonica HOM05D005860 ORTHO05D006977 1.0e-26 125.6 268 41.0
AagrBONN_evm.TU.Sc2ySwM_117.926 Anthoceros agrestis HOM05D000273 ORTHO05D006977 1.3e-21 108.6 290 45.2
vmacro18330 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 1.3e-21 108.6 92 64.1
Rhsim08G0044800 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.2e-19 102.1 85 67.1
ATR0609G011 Amborella trichopoda HOM05D005860 ORTHO05D006977 6.1e-19 99.8 269 35.3
Mapoly0007s0012 Marchantia polymorpha HOM05D005860 ORTHO05D006977 1.0e-18 99.0 285 44.9
Pp3c15_12290 Physcomitrium patens HOM05D005860 ORTHO05D006977 6.4e-16 89.7 170 32.9
Sed0001458 Sechium edule HOM05D005860 ORTHO05D006977 6.0e-14 83.2 87 60.9
TPR.G88 Trifolium pratense HOM05D005860 ORTHO05D006977 3.0e-13 80.9 61 62.3
vmacro18328 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 1.5e-12 78.6 88 54.5
HPP92_024251 Vanilla planifolia HOM05D005860 ORTHO05D006977 5.6e-12 76.6 92 45.7
TAR374G0834 Trochodendron aralioides HOM05D005860 ORTHO05D006977 4.7e-11 73.6 54 64.8
vmacro18329 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 1.7e-08 65.1 164 36.6
AT2G03050 Arabidopsis thaliana HOM05D001557 ORTHO05D001299 2.2e-08 64.7 190 33.2
Carub.0005s0190 Capsella rubella HOM05D001557 ORTHO05D001299 2.9e-08 64.3 190 33.2
BcaC06g34023 Brassica carinata HOM05D001557 ORTHO05D001299 3.7e-08 63.9 188 34.6
BraA06t27219Z Brassica rapa HOM05D001557 ORTHO05D001299 3.7e-08 63.9 188 34.6
C07p33620 Brassica napus HOM05D001557 ORTHO05D001299 6.4e-08 63.2 188 34.6
AL5G12630 Arabidopsis lyrata HOM05D001557 ORTHO05D001299 8.3e-08 62.8 190 33.2
Sp2g14050 Schrenkiella parvula HOM05D001557 ORTHO05D001299 8.3e-08 62.8 190 32.6
BcaC06g31205 Brassica carinata HOM05D001557 ORTHO05D001299 1.4e-07 62.0 188 33.0
Thhalv10004730m.g Eutrema salsugineum HOM05D001557 ORTHO05D001299 1.4e-07 62.0 191 33.0
AagrBONN_evm.TU.Sc2ySwM_368.2733 Anthoceros agrestis HOM05D005605 ORTHO05D001299 2.4e-07 61.2 168 38.1
Ciclev10032299m.g Citrus clementina HOM05D001557 ORTHO05D001299 4.1e-07 60.5 196 33.7
C05p46560 Brassica napus HOM05D001557 ORTHO05D001299 7.0e-07 59.7 187 27.3
BolC5t33385H Brassica oleracea HOM05D001557 ORTHO05D001299 7.0e-07 59.7 187 27.3
Medtr3g092710 Medicago truncatula HOM05D003457 ORTHO05D009746 7.0e-07 59.7 190 26.3
AL3G32260 Arabidopsis lyrata HOM05D001557 ORTHO05D001299 9.2e-07 59.3 187 26.2
A06p43330 Brassica napus HOM05D001557 ORTHO05D001299 9.2e-07 59.3 182 34.6
BolC7t43872H Brassica oleracea HOM05D001557 ORTHO05D001299 9.2e-07 59.3 182 34.6
BraA05t21910Z Brassica rapa HOM05D001557 ORTHO05D001299 1.2e-06 58.9 187 26.7
Carub.0003s1871 Capsella rubella HOM05D001557 ORTHO05D001299 1.2e-06 58.9 187 26.2
Thecc.03G208500 Theobroma cacao HOM05D003457 ORTHO05D009746 1.2e-06 58.9 195 25.6
Cfa018219 Carpinus fangiana HOM05D002901 ORTHO05D003183 1.6e-06 58.5 186 23.1
Aa31LG2G7340 Aethionema arabicum HOM05D001557 ORTHO05D001299 2.1e-06 58.2 190 33.7
Thhalv10022350m.g Eutrema salsugineum HOM05D001557 ORTHO05D001299 2.1e-06 58.2 187 25.7
CiPaw.16G005800 Carya illinoinensis HOM05D002901 ORTHO05D003183 2.7e-06 57.8 186 23.1
Haze_17884 Corylus avellana HOM05D002901 ORTHO05D003183 2.7e-06 57.8 186 22.6
QL07p031555 Quercus lobata HOM05D002901 ORTHO05D003183 2.7e-06 57.8 186 24.2
A05p30680 Brassica napus HOM05D001557 ORTHO05D001299 3.5e-06 57.4 187 25.7
Atru.chr12.2427 Acer truncatum HOM05D003457 ORTHO05D009746 4.6e-06 57.0 190 25.3
Sp5g33970 Schrenkiella parvula HOM05D005956 ORTHO05D007197 4.6e-06 57.0 185 50.3
Sed0026481 Sechium edule HOM05D002901 ORTHO05D003183 4.6e-06 57.0 186 23.1
THA.LOC104801801 Tarenaya hassleriana HOM05D001557 ORTHO05D001299 4.6e-06 57.0 187 34.8
QL07p030484 Quercus lobata HOM05D002901 ORTHO05D003183 6.0e-06 56.6 186 23.7
AT3G18870 Arabidopsis thaliana HOM05D001557 ORTHO05D001299 7.8e-06 56.2 187 25.7
CARHR094320 Cardamine hirsuta HOM05D001557 ORTHO05D001299 7.8e-06 56.2 187 25.7
FAN19G2893 Fragaria x ananassa HOM05D002901 ORTHO05D003183 7.8e-06 56.2 195 22.6


User provided reference genes

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