Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 1.1e-188 663.3 360 100.0
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 7.9e-144 514.2 362 82.6
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 1.2e-131 473.8 360 76.9
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 3.2e-129 465.7 360 76.7
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 6.8e-103 378.3 364 65.7
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 3.0e-98 362.8 358 63.1
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 1.1e-97 360.9 358 64.0
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 1.6e-96 357.1 363 60.1
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 3.6e-96 355.9 359 59.1
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 8.1e-96 354.8 343 63.0
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 1.2e-94 350.9 342 60.8
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 9.8e-94 347.8 342 60.8
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.9e-92 343.6 360 58.1
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 2.4e-92 343.2 360 60.0
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 1.2e-91 340.9 395 56.2
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 2.1e-91 340.1 342 59.9
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 4.6e-91 339.0 357 61.9
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 1.3e-90 337.4 351 61.5
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 3.0e-90 336.3 363 58.4
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 3.0e-90 336.3 363 58.4
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 8.6e-90 334.7 341 59.2
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 1.9e-89 333.6 365 57.0
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 7.3e-89 331.6 341 59.2
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 9.5e-89 331.3 340 59.1
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 1.6e-88 330.5 342 58.8
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 4.7e-88 328.9 342 58.8
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.2e-88 328.6 341 58.7
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 1.4e-87 327.4 354 58.5
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 1.8e-87 327.0 342 58.5
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 3.1e-87 326.2 340 59.4
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 3.1e-87 326.2 340 59.4
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 2.6e-86 323.2 363 55.9
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 2.6e-86 323.2 344 57.0
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.6e-86 323.2 336 56.8
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 9.9e-86 321.2 359 57.4
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 9.9e-86 321.2 341 56.6
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 2.9e-85 319.7 364 57.1
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 1.1e-84 317.8 337 57.9
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 1.9e-84 317.0 341 55.1
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 1.9e-84 317.0 344 55.5
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.9e-84 317.0 360 53.3
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 1.9e-84 317.0 342 57.3
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.9e-84 317.0 342 57.3
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 3.2e-84 316.2 342 57.9
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 4.1e-84 315.8 357 52.7
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 1.2e-83 314.3 349 57.0
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 2.7e-83 313.2 361 53.7
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 7.8e-83 311.6 340 56.8
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 1.3e-82 310.8 342 55.0
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 1.3e-82 310.8 341 57.8
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.3e-82 310.8 340 56.5
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 1.7e-82 310.5 354 54.5
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 2.3e-82 310.1 337 55.5
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 3.0e-82 309.7 340 57.9
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 6.6e-82 308.5 365 57.0
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 6.6e-82 308.5 365 57.0
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 8.6e-82 308.1 343 57.4
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 2.1e-80 303.5 341 55.4
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 8.1e-80 301.6 340 53.8
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 1.4e-79 300.8 354 54.8
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 2.4e-79 300.1 359 54.3
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 2.4e-79 300.1 341 54.5
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 3.1e-79 299.7 352 55.1
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 4.0e-79 299.3 346 56.1
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 4.0e-79 299.3 346 56.1
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 6.8e-79 298.5 345 54.5
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 6.8e-79 298.5 345 54.5
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 6.8e-79 298.5 357 53.2
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 4.4e-78 295.8 368 52.7
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 4.4e-78 295.8 358 52.2
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 7.6e-78 295.0 347 53.3
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 9.9e-78 294.7 351 53.6
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 1.3e-77 294.3 352 51.7
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 2.9e-77 293.1 359 53.2
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.6e-75 287.3 396 48.7
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 1.6e-75 287.3 341 54.0
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 2.1e-75 287.0 335 54.9
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.7e-74 283.9 333 51.1
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 2.3e-74 283.5 336 54.8
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 5.1e-74 282.3 360 51.4
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 1.1e-73 281.2 365 52.6
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 4.3e-73 279.3 352 51.1
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 5.8e-70 268.9 343 51.6
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 1.7e-69 267.3 345 52.2
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 3.8e-69 266.2 362 50.3
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 9.3e-68 261.5 315 52.4
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 2.7e-67 260.0 357 48.5
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 1.3e-66 257.7 353 47.6
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 1.7e-66 257.3 339 50.1
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 2.5e-65 253.4 375 45.9
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 4.3e-65 252.7 357 50.1
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 7.6e-62 241.9 355 47.0
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 1.7e-61 240.7 347 47.0
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 8.4e-61 238.4 344 45.3
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 3.2e-60 236.5 367 44.4
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 4.2e-60 236.1 371 44.7
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 6.0e-59 232.3 346 46.8
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 1.0e-58 231.5 359 44.6
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 1.0e-58 231.5 356 46.6
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 5.1e-58 229.2 278 53.2
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 3.3e-57 226.5 317 48.9
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 5.6e-57 225.7 339 45.4
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 1.6e-56 224.2 343 46.1
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 1.6e-56 224.2 365 43.3
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 2.1e-56 223.8 351 46.4
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 2.1e-56 223.8 351 46.4
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.8e-56 223.4 366 43.4
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 3.7e-56 223.0 377 41.4
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 3.7e-56 223.0 376 42.0
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 1.8e-55 220.7 341 46.0
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 4.5e-54 216.1 344 44.8
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 1.7e-53 214.2 330 49.4
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 6.5e-53 212.2 307 47.2
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 4.2e-52 209.5 316 48.1
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 2.7e-51 206.8 362 42.3
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 1.3e-50 204.5 351 42.5
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 1.1e-47 194.9 344 41.3
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 9.3e-44 181.8 354 38.7
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 6.1e-43 179.1 350 39.4
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 1.0e-42 178.3 278 46.0
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 1.3e-42 177.9 311 42.8
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 8.7e-42 175.3 357 40.9
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 4.3e-41 172.9 212 53.3
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 2.1e-35 154.1 278 44.2
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 3.6e-35 153.3 346 37.0
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 2.3e-34 150.6 130 68.5
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 3.0e-34 150.2 361 35.2
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 5.7e-33 146.0 368 34.5
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 9.7e-33 145.2 351 36.5
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 1.1e-31 141.7 320 36.6
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 5.3e-31 139.4 176 48.3
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 5.3e-31 139.4 188 46.8
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 5.0e-29 132.9 158 53.8
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 6.5e-29 132.5 157 58.0
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 4.2e-28 129.8 311 34.1
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 4.5e-22 109.8 435 30.1
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 3.8e-21 106.7 106 56.6
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 1.6e-19 101.3 174 39.1
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 2.1e-19 100.9 259 37.1
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 2.0e-17 94.4 103 51.5
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 1.7e-16 91.3 200 40.0
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 3.7e-16 90.1 349 29.5
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 8.2e-16 89.0 147 40.1
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 1.6e-11 74.7 145 34.5
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.0e-10 72.0 130 42.3
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 1.8e-10 71.2 52 71.2
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 2.8e-08 63.9 41 61.0
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 1.1e-07 62.0 41 58.5


User provided reference genes

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