Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 2.9e-29 131.0 55 100.0
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 3.0e-26 120.9 54 88.9
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 2.5e-25 117.9 54 87.0
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 1.4e-20 102.1 55 72.7
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 6.7e-18 93.2 54 68.5
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 8.7e-18 92.8 54 63.0
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 1.5e-17 92.0 59 64.4
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 5.7e-17 90.1 56 62.5
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 7.4e-17 89.7 48 68.8
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.1e-16 88.2 49 67.3
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.1e-16 88.2 49 67.3
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 2.1e-16 88.2 49 67.3
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 2.8e-16 87.8 55 61.8
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 3.7e-16 87.4 46 69.6
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 4.8e-16 87.0 49 63.3
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 6.2e-16 86.7 45 71.1
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 1.1e-15 85.9 53 62.3
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 1.8e-15 85.1 55 60.0
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 2.4e-15 84.7 47 63.8
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 2.4e-15 84.7 57 59.6
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 5.3e-15 83.6 46 63.0
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 5.3e-15 83.6 46 60.9
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 5.3e-15 83.6 47 63.8
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 5.3e-15 83.6 47 63.8
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 6.9e-15 83.2 46 65.2
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 6.9e-15 83.2 46 63.0
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 9.0e-15 82.8 45 68.9
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 9.0e-15 82.8 45 68.9
Potri.007G034000 Populus trichocarpa HOM05D007587 ORTHO05D009657 9.0e-15 82.8 45 64.4
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 1.5e-14 82.0 46 63.0
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 2.0e-14 81.6 54 53.7
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 2.0e-14 81.6 54 57.4
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 2.0e-14 81.6 46 60.9
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 2.6e-14 81.3 53 56.6
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 2.6e-14 81.3 46 56.5
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 2.6e-14 81.3 45 66.7
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 7.6e-14 79.7 46 58.7
Lsat_1_v5_gn_3_93981 Lactuca sativa HOM05D007587 ORTHO05D009657 2.9e-13 77.8 46 63.0
Lsat_1_v5_gn_2_87241 Lactuca sativa HOM05D007587 ORTHO05D009657 3.8e-13 77.4 45 64.4
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 6.5e-13 76.6 46 56.5
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 6.5e-13 76.6 58 51.7
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 8.4e-13 76.3 46 56.5
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 2.5e-12 74.7 53 52.8
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 4.2e-12 73.9 43 62.8
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 5.5e-12 73.6 43 58.1
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 7.1e-12 73.2 52 51.9
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 9.3e-12 72.8 44 54.5
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 1.2e-11 72.4 45 55.6
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 1.6e-11 72.0 54 48.1
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 1.6e-11 72.0 54 48.1
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 1.6e-11 72.0 48 47.9
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 1.6e-11 72.0 45 53.3
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 2.1e-11 71.6 43 58.1
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 2.1e-11 71.6 43 58.1
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 3.5e-11 70.9 43 55.8
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 4.6e-11 70.5 43 53.5
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 6.1e-11 70.1 45 51.1
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 1.0e-10 69.3 43 55.8
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 1.0e-10 69.3 43 55.8
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 1.3e-10 68.9 46 50.0
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 1.3e-10 68.9 43 53.5
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 2.3e-10 68.2 43 53.5
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 2.3e-10 68.2 43 53.5
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 3.0e-10 67.8 43 48.8
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 3.9e-10 67.4 43 51.2
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 3.9e-10 67.4 43 53.5
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 3.9e-10 67.4 43 53.5
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 6.7e-10 66.6 43 55.8
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 6.7e-10 66.6 43 53.5
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 6.7e-10 66.6 43 53.5
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 8.7e-10 66.2 43 55.8
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 8.7e-10 66.2 43 51.2
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 1.1e-09 65.9 52 46.2
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 1.1e-09 65.9 43 48.8
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.9e-09 65.1 52 50.0
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 1.9e-09 65.1 43 51.2
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 2.5e-09 64.7 47 46.8
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 3.3e-09 64.3 43 48.8
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 5.7e-09 63.5 43 51.2
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 1.3e-08 62.4 43 48.8
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 3.7e-08 60.8 48 45.8
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 1.8e-07 58.5 42 45.2
CiPaw.01G029300 Carya illinoinensis HOM05D007587 ORTHO05D009657 2.4e-07 58.2 30 73.3
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.2e-06 55.8 48 41.7


User provided reference genes

Program Settings