Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 1.8e-139 499.2 251 100.0
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 6.6e-97 357.8 248 75.8
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 4.0e-94 348.6 252 74.6
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 3.4e-93 345.5 252 73.4
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 6.4e-92 341.3 250 70.0
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 6.4e-92 341.3 250 70.0
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 3.2e-91 339.0 252 71.8
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 7.9e-90 334.3 252 71.0
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.3e-89 333.6 257 69.6
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 6.6e-89 331.3 251 68.9
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 1.5e-88 330.1 251 68.9
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 4.3e-88 328.6 257 69.6
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 4.8e-87 325.1 257 67.7
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 6.2e-87 324.7 253 70.4
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 9.0e-86 320.9 251 66.9
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 2.0e-85 319.7 252 68.3
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 4.5e-85 318.5 252 67.1
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 1.7e-84 316.6 252 68.7
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 3.8e-84 315.5 252 67.9
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 7.1e-83 311.2 201 78.6
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 4.3e-80 302.0 243 63.8
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 7.4e-80 301.2 251 62.2
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 1.3e-79 300.4 251 61.0
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 2.1e-79 299.7 254 63.0
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 4.8e-79 298.5 242 62.0
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.0e-77 293.1 251 60.2
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 2.6e-77 292.7 242 60.7
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.0e-76 290.8 243 60.9
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 8.4e-76 287.7 247 60.3
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 1.1e-75 287.3 235 62.1
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.9e-75 286.6 251 58.2
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 6.0e-74 281.6 248 60.9
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 1.3e-73 280.4 252 56.7
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.8e-73 280.0 252 56.7
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 1.8e-73 280.0 253 58.5
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 2.3e-73 279.6 252 58.7
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.3e-73 279.6 252 56.7
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 5.1e-73 278.5 252 56.3
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.1e-72 277.3 187 70.1
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.5e-72 276.9 251 58.6
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.9e-72 276.6 243 60.5
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 3.3e-72 275.8 253 56.5
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 4.3e-72 275.4 243 58.8
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 9.6e-72 274.2 251 57.0
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 3.7e-71 272.3 181 72.4
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 4.8e-71 271.9 216 64.8
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.8e-70 270.0 220 60.0
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 6.9e-70 268.1 245 60.4
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 9.0e-70 267.7 245 60.0
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 1.5e-69 266.9 189 69.3
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 7.6e-69 264.6 190 68.9
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.3e-68 263.8 238 58.4
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 1.7e-68 263.5 200 65.0
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 1.7e-68 263.5 244 57.0
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 2.2e-68 263.1 196 65.3
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 2.2e-68 263.1 196 65.3
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 5.0e-68 261.9 248 57.3
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 6.5e-68 261.5 233 58.4
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 1.4e-67 260.4 177 68.9
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 4.2e-67 258.8 186 66.1
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 5.5e-67 258.5 199 64.3
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 5.5e-67 258.5 199 64.3
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 5.5e-67 258.5 250 54.4
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 5.5e-67 258.5 195 67.7
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 9.3e-67 257.7 199 63.8
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 1.6e-66 256.9 242 55.8
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 1.6e-66 256.9 199 64.8
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 3.5e-66 255.8 203 64.5
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 4.6e-66 255.4 199 66.3
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 4.6e-66 255.4 244 54.1
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 4.6e-66 255.4 184 67.4
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 6.1e-66 255.0 191 62.8
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 6.1e-66 255.0 244 57.4
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 1.0e-65 254.2 282 51.8
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 1.3e-65 253.8 188 66.0
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.8e-65 253.4 178 69.1
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 5.1e-65 251.9 191 65.4
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 5.1e-65 251.9 242 55.0
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 6.7e-65 251.5 247 55.1
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 8.7e-65 251.1 188 63.8
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 1.5e-64 250.4 188 66.5
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.9e-64 250.0 191 66.0
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 3.3e-64 249.2 248 53.6
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 3.3e-64 249.2 188 63.8
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 9.7e-64 247.7 250 54.8
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.3e-63 247.3 164 72.6
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.3e-63 247.3 182 64.3
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 3.7e-63 245.7 184 64.7
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 1.8e-62 243.4 187 63.6
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.8e-62 243.4 178 71.3
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 3.1e-62 242.7 206 59.2
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 3.1e-62 242.7 182 64.8
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 1.2e-61 240.7 148 79.7
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.0e-61 240.0 182 63.7
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 4.5e-61 238.8 182 65.4
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 7.7e-61 238.0 190 62.6
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 7.7e-61 238.0 184 60.9
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 1.3e-60 237.3 194 60.8
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 1.9e-59 233.4 230 55.7
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 3.2e-59 232.6 153 73.2
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 3.2e-59 232.6 155 71.6
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.2e-59 232.3 182 62.6
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 2.7e-58 229.6 166 72.9
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 4.6e-58 228.8 155 70.3
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 6.1e-58 228.4 157 70.1
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 7.9e-58 228.0 261 51.0
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 1.0e-57 227.6 175 62.9
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 5.7e-56 221.9 184 59.2
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 6.3e-55 218.4 194 59.8
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 6.9e-54 214.9 144 70.8
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.9e-54 214.9 155 67.7
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 9.1e-54 214.5 161 66.5
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 1.5e-53 213.8 148 67.6
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 2.6e-53 213.0 143 72.0
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 2.6e-53 213.0 156 65.4
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.3e-52 210.7 179 55.9
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.3e-52 210.7 179 56.4
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 2.2e-52 209.9 150 65.3
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 6.5e-52 208.4 179 55.3
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 6.5e-52 208.4 189 57.7
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 8.5e-52 208.0 181 59.1
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 1.4e-51 207.2 147 65.3
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.1e-50 201.8 174 57.5
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 1.8e-49 200.3 196 54.1
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 3.0e-49 199.5 128 77.3
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 6.7e-49 198.4 162 60.5
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 4.4e-48 195.7 156 59.0
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 3.1e-46 189.5 145 60.0
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 1.2e-45 187.6 202 51.5
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 1.6e-45 187.2 252 42.9
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 1.3e-44 184.1 173 55.5
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 3.8e-44 182.6 166 53.6
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 1.1e-43 181.0 190 52.1
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.5e-43 180.6 164 57.3
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 5.5e-43 178.7 145 58.6
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.1e-40 171.0 137 56.9
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 2.6e-40 169.9 140 56.4
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 1.7e-39 167.2 143 60.8
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.5e-37 159.1 185 48.1
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 1.6e-34 150.6 177 46.9
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 3.0e-33 146.4 148 56.8
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 4.8e-31 139.0 147 53.1
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 6.5e-28 128.6 160 47.5
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 5.2e-25 119.0 129 48.8
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.2e-18 97.8 79 58.2
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.2e-18 97.8 146 39.0
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 1.0e-17 94.7 160 33.8
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 4.0e-17 92.8 131 35.1
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 3.2e-14 83.2 152 31.6
QL02p051406 Quercus lobata HOM05D004693 ORTHO05D005545 1.0e-12 78.2 95 45.3
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.3e-12 77.0 134 34.3
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 9.5e-11 71.6 83 50.6
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.2e-10 71.2 124 30.6
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.1e-10 70.5 56 57.1
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 4.0e-09 66.2 116 32.8
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 8.9e-09 65.1 60 55.0
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.2e-08 64.7 162 28.4
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.5e-08 62.0 76 48.7


User provided reference genes

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