Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 1.7e-177 625.9 323 100.0
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 2.6e-154 548.9 323 91.3
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 7.9e-135 484.2 315 83.8
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 2.4e-123 446.0 325 76.6
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 8.8e-102 374.4 320 67.5
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 7.5e-101 371.3 318 67.9
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 1.7e-100 370.2 326 66.0
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 3.2e-96 355.9 328 64.3
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 2.1e-95 353.2 320 63.8
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 3.4e-93 345.9 320 63.4
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 4.8e-92 342.0 326 63.8
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 4.8e-92 342.0 326 63.8
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 9.1e-91 337.8 288 65.3
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 1.2e-90 337.4 311 63.3
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.3e-89 334.0 320 61.2
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 2.9e-89 332.8 321 63.6
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 3.2e-88 329.3 319 61.4
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 7.2e-88 328.2 328 60.7
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 3.6e-87 325.9 329 62.6
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 1.8e-86 323.6 263 71.9
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 1.5e-85 320.5 254 70.9
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 5.7e-85 318.5 328 58.2
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 7.5e-85 318.2 330 60.3
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.3e-81 307.4 329 59.9
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 3.8e-81 305.8 328 56.7
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 1.9e-80 303.5 252 68.7
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 1.0e-78 297.7 318 55.7
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.8e-78 297.0 317 58.4
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 3.7e-76 289.3 341 54.3
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 3.7e-76 289.3 271 65.3
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 3.7e-76 289.3 321 56.4
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.1e-75 287.7 325 56.3
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 4.1e-75 285.8 333 56.5
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 2.0e-74 283.5 254 63.4
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 3.5e-74 282.7 318 54.1
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 6.0e-74 282.0 325 57.5
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 6.0e-74 282.0 327 54.7
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 1.3e-73 280.8 317 54.6
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.3e-73 280.8 325 54.8
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 1.3e-73 280.8 329 56.5
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.7e-73 280.4 325 54.8
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.0e-73 279.6 323 56.0
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 3.9e-73 279.3 318 53.5
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 3.9e-73 279.3 320 53.8
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 5.0e-73 278.9 247 63.2
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 5.0e-73 278.9 311 55.6
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 4.3e-72 275.8 347 53.6
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 3.6e-71 272.7 314 53.8
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 8.0e-71 271.6 299 55.9
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 1.1e-70 271.2 255 64.7
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 3.1e-70 269.6 319 53.9
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 5.2e-70 268.9 314 53.8
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 6.8e-70 268.5 323 53.3
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 6.8e-70 268.5 268 60.8
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 1.5e-69 267.3 322 52.8
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 2.0e-69 266.9 316 52.5
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 6.4e-68 261.9 333 49.2
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.1e-67 261.2 231 66.2
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.9e-67 260.4 322 51.2
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 2.4e-67 260.0 320 53.4
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 5.4e-67 258.8 315 51.7
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 9.2e-67 258.1 322 50.9
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.6e-66 257.3 328 50.3
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 1.6e-66 257.3 325 48.9
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 2.0e-66 256.9 307 55.0
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.7e-66 256.5 332 50.9
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 7.8e-66 255.0 247 62.8
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 1.0e-65 254.6 246 58.5
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 1.3e-65 254.2 225 63.6
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 2.3e-65 253.4 320 49.4
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 3.0e-65 253.1 316 51.3
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.1e-64 251.1 315 52.4
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 1.9e-64 250.4 311 53.4
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 1.9e-64 250.4 329 50.2
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 1.9e-64 250.4 314 51.3
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 2.5e-64 250.0 344 45.6
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 3.3e-64 249.6 311 52.4
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 3.3e-64 249.6 307 53.1
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 7.3e-64 248.4 315 52.1
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 9.5e-64 248.1 322 49.1
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 1.2e-63 247.7 232 61.6
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 2.1e-63 246.9 264 57.2
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 5.2e-62 242.3 317 54.6
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.5e-61 240.7 254 57.9
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 1.7e-60 237.3 332 47.6
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 1.1e-59 234.6 270 60.0
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 2.7e-58 229.9 329 49.2
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 6.0e-58 228.8 345 45.8
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 5.1e-57 225.7 305 48.5
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 5.1e-57 225.7 169 73.4
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 6.6e-57 225.3 311 49.2
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 2.5e-56 223.4 309 46.6
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 9.5e-56 221.5 270 54.4
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 8.1e-55 218.4 342 47.1
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 2.4e-54 216.9 307 47.9
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 2.0e-53 213.8 162 69.1
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 3.4e-53 213.0 234 59.8
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 3.4e-53 213.0 269 53.9
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 9.9e-53 211.5 330 46.4
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 4.9e-52 209.1 264 51.1
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 4.9e-52 209.1 299 48.5
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 1.6e-50 204.1 295 48.5
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.3e-49 200.3 260 53.8
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 1.9e-48 197.2 233 54.5
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 3.3e-48 196.4 315 44.1
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 4.3e-48 196.1 238 52.5
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 5.6e-48 195.7 326 43.6
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 7.3e-48 195.3 215 51.2
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 1.6e-47 194.1 263 49.4
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 1.6e-47 194.1 263 49.4
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 4.7e-47 192.6 312 43.6
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 4.7e-47 192.6 298 45.3
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 4.7e-47 192.6 226 54.9
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 8.1e-47 191.8 345 41.2
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.1e-46 191.4 233 54.1
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.4e-46 191.0 301 44.5
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 2.4e-46 190.3 320 42.2
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 3.1e-46 189.9 333 43.5
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 4.0e-46 189.5 345 40.9
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 4.0e-46 189.5 244 50.4
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 5.2e-46 189.1 252 49.2
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 9.0e-46 188.3 327 41.6
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 1.2e-45 188.0 326 41.4
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 7.6e-45 185.3 333 40.5
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 8.4e-44 181.8 258 46.9
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 8.4e-44 181.8 205 56.1
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.9e-43 180.6 192 54.7
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 4.2e-43 179.5 220 54.1
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 4.2e-43 179.5 255 50.2
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 5.4e-43 179.1 329 41.3
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 4.6e-42 176.0 320 42.2
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 4.6e-42 176.0 196 54.6
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 7.8e-42 175.3 305 43.3
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 7.8e-42 175.3 289 43.6
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 5.1e-41 172.6 293 41.0
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 1.5e-40 171.0 308 41.9
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 1.9e-40 170.6 255 48.6
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 1.9e-40 170.6 255 48.6
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 9.6e-40 168.3 248 46.4
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.3e-39 167.9 293 42.0
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 8.1e-39 165.2 326 40.8
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 2.4e-38 163.7 249 46.2
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 9.0e-38 161.8 271 45.8
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 1.2e-37 161.4 302 39.4
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 2.2e-36 157.1 225 46.2
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.4e-35 153.7 157 54.1
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 6.0e-34 149.1 110 70.0
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 6.0e-34 149.1 255 42.4
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 1.3e-33 147.9 115 67.8
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 3.9e-33 146.4 308 37.0
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 5.1e-33 146.0 308 37.0
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 1.1e-32 144.8 236 47.0
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 3.3e-32 143.3 308 37.0
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 2.8e-31 140.2 308 37.0
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 9.9e-29 131.7 309 36.2
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 9.9e-29 131.7 288 36.5
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.3e-28 131.3 279 37.3
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 1.1e-24 118.2 207 42.0
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 7.4e-24 115.5 121 57.9
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 8.4e-20 102.1 250 34.4
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 5.1e-17 92.8 63 76.2
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 1.9e-16 90.9 90 56.7


User provided reference genes

Program Settings