Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G045202 Glycine max HOM05D007356 ORTHO05D009247 1.4e-90 336.3 173 100.0
Glyma.13G047100 Glycine max HOM05D007356 ORTHO05D009247 2.0e-76 289.3 174 89.1
Phvul.004G062800 Phaseolus vulgaris HOM05D007356 ORTHO05D009247 3.5e-73 278.5 175 85.7
VMungo0464G1268 Vigna mungo HOM05D007356 ORTHO05D009247 7.6e-68 260.8 175 81.1
arahy.Tifrunner.gnm1.ann1.33CL05 Arachis hypogaea HOM05D007356 ORTHO05D009247 1.9e-58 229.6 186 68.8
arahy.Tifrunner.gnm1.ann1.3VIJ8X Arachis hypogaea HOM05D007356 ORTHO05D009247 2.5e-58 229.2 186 68.8
Psat1g012920 Pisum sativum HOM05D007356 ORTHO05D009247 1.2e-57 226.9 196 65.3
Medtr6g017235 Medicago truncatula HOM05D007356 ORTHO05D009247 2.1e-57 226.1 184 67.9
TPR.G32461 Trifolium pratense HOM05D007356 ORTHO05D009247 1.0e-56 223.8 193 64.2
Lj2g0005002 Lotus japonicus HOM05D007356 ORTHO05D009247 9.6e-55 217.2 194 63.4
Ca_26179_v3 Cicer arietinum L. HOM05D007356 ORTHO05D009247 6.2e-54 214.5 197 60.9
Lalb_Chr06g0174681 Lupinus albus HOM05D007356 ORTHO05D009247 1.7e-43 179.9 172 62.2
Ciclev10011716m.g Citrus clementina HOM05D007356 ORTHO05D009247 9.1e-37 157.5 178 51.7
Haze_14128 Corylus avellana HOM05D007356 ORTHO05D009247 5.9e-36 154.8 204 46.1
Cfa007946 Carpinus fangiana HOM05D007356 ORTHO05D009247 1.7e-35 153.3 204 46.1
Atru.chr8.830 Acer truncatum HOM05D007356 ORTHO05D009247 3.8e-35 152.1 185 49.2
Cpa.g.sc179.26 Carica papaya HOM05D007356 ORTHO05D009247 1.4e-32 143.7 189 47.1
Prupe.3G239800 Prunus persica HOM05D007356 ORTHO05D009247 5.1e-32 141.7 200 44.5
vmacro05573 Vaccinium macrocarpon HOM05D007356 ORTHO05D009247 6.7e-32 141.4 185 47.0
Dinv34849 Davidia involucrata HOM05D007356 ORTHO05D009247 4.4e-31 138.7 212 43.4
MD09G1084700 Malus domestica HOM05D007356 ORTHO05D009247 7.4e-31 137.9 203 45.3
Thecc.04G137600 Theobroma cacao HOM05D007356 ORTHO05D009247 9.7e-31 137.5 182 46.2
COL.COLO4_16192 Corchorus olitorius HOM05D007356 ORTHO05D009247 3.7e-30 135.6 180 45.6
Manes.01G108100 Manihot esculenta HOM05D007356 ORTHO05D009247 1.1e-29 134.0 190 44.7
Hma1.2p1_0136F.1_g062070 Hydrangea macrophylla HOM05D007356 ORTHO05D009247 4.1e-29 132.1 193 45.1
CANSAT64G1351 Cannabis sativa HOM05D007356 ORTHO05D009247 5.3e-29 131.7 193 40.9
Duzib133G0592 Durio zibethinus HOM05D007356 ORTHO05D009247 5.3e-29 131.7 182 44.0
Gorai.007G180100 Gossypium raimondii HOM05D007356 ORTHO05D009247 1.5e-28 130.2 183 42.1
Potri.017G112500 Populus trichocarpa HOM05D007356 ORTHO05D009247 2.0e-28 129.8 186 44.6
Potri.004G102400 Populus trichocarpa HOM05D007356 ORTHO05D009247 3.5e-28 129.0 185 43.8
MD17G1074100 Malus domestica HOM05D007356 ORTHO05D009247 4.5e-28 128.6 215 42.3
RcHm_v2.0_Chr2g0163141 Rosa chinensis HOM05D007356 ORTHO05D009247 5.9e-28 128.3 187 46.0
FAN14G2396 Fragaria x ananassa HOM05D007356 ORTHO05D009247 1.0e-27 127.5 194 45.4
FvH4_6g45360 Fragaria vesca HOM05D007356 ORTHO05D009247 1.7e-27 126.7 190 44.7
Gohir.A11G162300 Gossypium hirsutum HOM05D007356 ORTHO05D009247 2.2e-27 126.3 183 40.4
Gohir.D11G168600 Gossypium hirsutum HOM05D007356 ORTHO05D009247 5.0e-27 125.2 183 41.0
Eucgr.J01469 Eucalyptus grandis HOM05D007356 ORTHO05D009247 1.1e-26 124.0 186 43.5
Oeu030757.2 Olea europaea HOM05D007356 ORTHO05D009247 1.5e-26 123.6 192 44.3
Rhsim10G0063400 Rhododendron simsii HOM05D007356 ORTHO05D009247 1.9e-26 123.2 195 44.6
Sabra17G0093200 Salix brachista HOM05D007356 ORTHO05D009247 2.5e-26 122.9 198 41.4
CSS0016710 Camellia sinensis var. sinensis HOM05D007356 ORTHO05D009247 3.2e-26 122.5 202 42.6
ClCG05G012060 Citrullus lanatus HOM05D007356 ORTHO05D009247 9.4e-26 120.9 213 39.0
FAN09G4466 Fragaria x ananassa HOM05D007356 ORTHO05D009247 9.4e-26 120.9 194 44.3
QL02p052579 Quercus lobata HOM05D007356 ORTHO05D009247 1.2e-25 120.6 294 35.4
TWI31G0521 Tripterygium wilfordii HOM05D007356 ORTHO05D009247 1.2e-25 120.6 183 39.9
CsaV3_3G020350 Cucumis sativus L. HOM05D007356 ORTHO05D009247 3.6e-25 119.0 212 38.7
Actinidia18124 Actinidia chinensis HOM05D007356 ORTHO05D009247 4.7e-25 118.6 203 43.8
THA.LOC104820954 Tarenaya hassleriana HOM05D007356 ORTHO05D009247 1.0e-24 117.5 179 41.9
TWI79G1397 Tripterygium wilfordii HOM05D007356 ORTHO05D009247 1.8e-24 116.7 187 40.1
PGSC0003DMG400012678 Solanum tuberosum HOM05D007356 ORTHO05D009247 2.3e-24 116.3 202 40.6
ECA232G5000 Erigeron canadensis HOM05D007356 ORTHO05D009247 4.0e-24 115.5 179 46.4
Peaxi162Scf01327g00135 Petunia axillaris HOM05D007356 ORTHO05D009247 8.8e-24 114.4 193 42.5
Sopen02g030430 Solanum pennellii HOM05D007356 ORTHO05D009247 2.0e-23 113.2 202 40.1
SGA_v2.0_scaffold33G13428 Striga asiatica HOM05D007356 ORTHO05D009247 2.0e-23 113.2 178 45.5
MBI16_g25107_MAGBIO Magnolia biondii HOM05D007356 ORTHO05D009247 7.5e-23 111.3 196 41.8
Nn4g23745 Nelumbo nucifera HOM05D007356 ORTHO05D009247 7.5e-23 111.3 219 35.2
Solyc02g085740.4 Solanum lycopersicum HOM05D007356 ORTHO05D009247 1.3e-22 110.5 195 42.1
Cc07_g09030 Coffea canephora HOM05D007356 ORTHO05D009247 2.2e-22 109.8 219 38.4
Nitab4.5_0004118g0090 Nicotiana tabacum HOM05D007356 ORTHO05D009247 3.7e-22 109.0 203 39.4
HanXRQChr14g0438671 Helianthus annuus HOM05D007356 ORTHO05D009247 6.3e-22 108.2 187 44.4
TAR374G1737 Trochodendron aralioides HOM05D007356 ORTHO05D009247 8.2e-22 107.8 218 36.7
Lsat_1_v5_gn_4_153101 Lactuca sativa HOM05D007356 ORTHO05D009247 9.1e-21 104.4 201 37.8
Migut.H00199 Erythranthe guttata HOM05D007356 ORTHO05D009247 1.6e-20 103.6 172 40.7
Nitab4.5_0008781g0020 Nicotiana tabacum HOM05D007356 ORTHO05D009247 5.9e-20 101.7 203 38.4
PSO782G4491 Papaver somniferum HOM05D007356 ORTHO05D009247 2.2e-19 99.8 218 37.6
Ah.16g101940 Amaranthus hybridus HOM05D007356 ORTHO05D009247 5.0e-19 98.6 197 36.5
PSO063G7355 Papaver somniferum HOM05D007356 ORTHO05D009247 8.5e-19 97.8 218 37.2
DCAR_017218 Daucus carota HOM05D007356 ORTHO05D009247 2.5e-18 96.3 195 35.9
Aa31LG5G12990 Aethionema arabicum HOM05D007356 ORTHO05D009247 9.4e-18 94.4 173 36.4
Aqoxy3G03920 Aquilegia oxysepala HOM05D007356 ORTHO05D009247 9.4e-18 94.4 209 35.4
CARHR076490 Cardamine hirsuta HOM05D007356 ORTHO05D009247 9.4e-18 94.4 175 38.3
AL3G11850 Arabidopsis lyrata HOM05D007356 ORTHO05D009247 1.2e-17 94.0 177 37.9
GSVIVG01036444001 Vitis vinifera HOM05D007356 ORTHO05D009247 4.7e-17 92.0 109 45.9
AUR62014539 Chenopodium quinoa HOM05D007356 ORTHO05D009247 1.2e-15 87.4 218 35.8
AUR62008964 Chenopodium quinoa HOM05D007356 ORTHO05D009247 2.6e-15 86.3 228 33.8
Hund13734 Selenicereus undatus HOM05D007356 ORTHO05D009247 2.6e-15 86.3 190 35.3
CiPaw.03G059600 Carya illinoinensis HOM05D007356 ORTHO05D009247 9.8e-15 84.3 202 30.7
CDE02G0316 Ceratophyllum demersum HOM05D007356 ORTHO05D009247 3.1e-13 79.3 190 38.9
CDE08G0776 Ceratophyllum demersum HOM05D007356 ORTHO05D009247 3.1e-13 79.3 191 35.6
unitig_60.g25515 Utricularia gibba HOM05D007356 ORTHO05D009247 2.0e-12 76.6 175 31.4
Lj2A447T55 Lonicera japonica HOM05D007356 ORTHO05D009247 3.8e-11 72.4 90 50.0
Lj2C447T11 Lonicera japonica HOM05D007356 ORTHO05D009247 1.5e-10 70.5 90 46.7
Zm00001eb155990 Zea mays HOM05D007356 ORTHO05D009247 4.2e-10 68.9 168 36.3
Sed0015927 Sechium edule HOM05D007356 ORTHO05D009247 9.4e-10 67.8 88 44.3
Sed0002469 Sechium edule HOM05D007356 ORTHO05D009247 3.6e-09 65.9 45 64.4
MELO3C023764.2 Cucumis melo HOM05D007356 ORTHO05D009247 1.0e-08 64.3 59 52.5
Os01g0694200 Oryza sativa ssp. japonica HOM05D007356 ORTHO05D009247 1.0e-08 64.3 166 33.7
ATR0681G386 Amborella trichopoda HOM05D007356 ORTHO05D009247 2.3e-08 63.2 294 23.8
PGR042G1693 Punica granatum HOM05D007356 ORTHO05D009247 2.3e-08 63.2 92 45.7
Sc11g0008200 Simmondsia chinensis HOM05D007356 ORTHO05D009247 5.2e-08 62.0 96 42.7
SEGI_12886 Sequoiadendron giganteum HOM05D007356 ORTHO05D009247 8.8e-08 61.2 56 51.8


User provided reference genes

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