Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 7.9e-158 560.5 294 100.0
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 1.5e-148 529.6 291 90.4
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 3.7e-139 498.4 291 83.5
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 4.5e-137 491.5 292 86.6
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 1.2e-134 483.4 292 86.6
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 8.8e-133 477.2 292 82.9
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 2.0e-132 476.1 292 82.5
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 4.4e-132 474.9 291 82.8
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 8.2e-123 444.1 291 81.8
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 1.1e-122 443.7 292 76.7
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 1.5e-116 423.3 291 73.2
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 8.3e-115 417.5 291 75.9
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 1.1e-114 417.2 291 71.1
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 1.8e-114 416.4 291 74.9
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 7.0e-114 414.5 291 74.6
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.6e-113 413.3 291 73.5
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 5.9e-113 411.4 293 75.8
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.0e-112 410.6 293 75.4
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.7e-112 409.8 293 69.3
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 5.0e-112 408.3 295 70.2
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 6.5e-112 407.9 293 69.6
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 6.5e-112 407.9 291 69.4
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 1.1e-111 407.1 291 70.4
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 1.1e-111 407.1 291 72.5
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 4.2e-111 405.2 291 70.8
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 2.7e-110 402.5 291 68.4
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 6.1e-110 401.4 292 76.0
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 6.1e-110 401.4 293 71.7
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.0e-110 401.0 309 66.3
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.8e-109 399.8 291 73.2
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 5.2e-109 398.3 292 74.3
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.8e-109 397.5 291 72.2
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 1.5e-108 396.7 291 71.1
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 2.0e-108 396.4 293 68.3
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 3.4e-108 395.6 294 73.1
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.4e-108 395.6 291 72.9
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 4.4e-108 395.2 291 70.8
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 1.3e-107 393.7 290 72.4
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 8.3e-107 391.0 291 70.1
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.8e-106 389.8 291 70.8
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 2.4e-106 389.4 292 67.1
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 3.1e-106 389.0 291 66.7
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 3.1e-106 389.0 290 70.7
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 4.1e-106 388.7 296 70.3
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 4.1e-106 388.7 293 68.6
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 7.0e-106 387.9 291 70.4
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 7.0e-106 387.9 292 69.9
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 2.0e-105 386.3 293 66.2
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 4.5e-105 385.2 293 71.3
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.7e-104 383.3 294 64.6
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 3.8e-104 382.1 293 70.0
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 3.8e-104 382.1 292 67.5
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 3.8e-104 382.1 295 68.5
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 6.6e-104 381.3 291 66.7
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 1.1e-103 380.6 292 70.5
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 2.5e-103 379.4 291 73.2
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 4.3e-103 378.6 304 63.8
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.2e-102 377.1 291 70.8
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 1.2e-102 377.1 295 66.8
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 2.1e-102 376.3 293 69.6
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 2.1e-102 376.3 342 59.9
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 3.6e-102 375.6 291 67.7
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.6e-102 375.6 293 66.6
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 4.7e-102 375.2 291 63.9
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-101 373.6 291 70.8
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 3.0e-101 372.5 291 67.4
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.5e-100 370.2 291 70.4
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 2.6e-100 369.4 291 69.8
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 3.4e-100 369.0 293 68.9
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 7.5e-100 367.9 293 68.3
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 7.5e-100 367.9 293 66.6
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 9.8e-100 367.5 294 68.0
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.3e-99 367.1 291 70.1
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.2e-99 366.3 243 75.7
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 3.7e-99 365.5 296 68.6
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 4.9e-99 365.2 291 69.4
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 4.9e-99 365.2 291 64.9
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 1.4e-98 363.6 295 63.1
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.8e-98 363.2 295 70.5
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 3.2e-98 362.5 291 67.4
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 4.1e-98 362.1 313 60.1
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 7.0e-98 361.3 291 65.3
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 9.2e-98 360.9 291 69.1
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 9.2e-98 360.9 291 68.4
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.6e-97 360.1 291 65.3
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 2.0e-97 359.8 291 67.0
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 3.5e-97 359.0 291 68.0
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 3.5e-97 359.0 298 65.1
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 5.9e-97 358.2 291 67.7
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 5.9e-97 358.2 295 68.1
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 1.3e-96 357.1 319 58.3
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 2.3e-96 356.3 297 68.0
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 3.3e-95 352.4 291 68.4
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 7.3e-95 351.3 291 62.9
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 7.3e-95 351.3 301 62.1
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 9.5e-95 350.9 294 66.7
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 2.8e-94 349.4 292 61.3
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 2.8e-94 349.4 293 64.2
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 6.8e-93 344.7 294 66.0
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 8.9e-93 344.4 290 56.9
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 1.5e-92 343.6 291 60.5
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 2.6e-92 342.8 292 63.7
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 2.6e-92 342.8 291 64.6
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 5.8e-92 341.7 291 61.2
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 7.5e-92 341.3 291 63.6
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 7.5e-92 341.3 292 61.0
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 9.8e-92 340.9 292 56.8
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 1.3e-91 340.5 291 66.3
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 1.7e-91 340.1 292 59.9
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 3.7e-91 339.0 293 60.1
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 8.3e-91 337.8 292 59.6
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 2.4e-90 336.3 292 61.3
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 7.0e-90 334.7 291 64.9
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.7e-89 332.8 291 57.0
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 3.5e-89 332.4 292 58.6
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.0e-88 330.9 257 67.3
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 5.0e-88 328.6 292 57.5
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 2.5e-87 326.2 294 62.6
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 4.3e-87 325.5 299 61.9
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 5.6e-87 325.1 294 64.3
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 1.2e-86 323.9 291 54.3
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.1e-86 323.2 297 55.9
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 2.8e-86 322.8 257 70.8
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 3.6e-86 322.4 297 63.6
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 4.7e-86 322.0 288 57.6
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 6.2e-86 321.6 291 54.6
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.8e-85 320.1 295 58.0
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 4.0e-85 318.9 291 54.6
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 8.9e-85 317.8 288 56.9
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.6e-84 316.2 294 54.8
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 2.6e-84 316.2 293 63.1
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.3e-83 313.9 294 58.2
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 4.9e-83 312.0 306 54.9
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.9e-82 310.1 292 54.1
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 7.1e-82 308.1 282 59.6
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 2.7e-81 306.2 244 67.6
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 6.0e-81 305.1 242 65.7
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 8.6e-80 301.2 228 71.1
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 8.6e-80 301.2 288 54.5
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 1.1e-79 300.8 203 74.4
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 1.9e-79 300.1 242 61.2
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 1.2e-78 297.4 292 56.5
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 3.2e-74 282.7 293 52.9
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 3.2e-74 282.7 375 47.5
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.0e-72 277.7 301 57.1
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 5.1e-72 275.4 243 58.0
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 2.5e-71 273.1 243 64.2
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 3.4e-68 262.7 243 56.0
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.7e-67 260.4 191 70.2
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 7.3e-63 245.0 294 43.9
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 3.5e-57 226.1 299 39.5
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 4.6e-57 225.7 296 44.3
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 4.0e-53 212.6 134 79.1
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 2.9e-51 206.5 290 38.6
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 1.2e-49 201.1 211 50.2
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 4.6e-49 199.1 198 51.0
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.0e-49 198.7 137 71.5
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 4.3e-47 192.6 292 40.8
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 1.5e-44 184.1 92 94.6
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.9e-42 177.2 131 70.2
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 7.9e-41 171.8 203 43.8
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.0e-40 169.9 128 68.8
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 8.7e-40 168.3 288 39.9
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 8.7e-40 168.3 200 48.5
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 2.6e-36 156.8 129 62.8
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 4.3e-31 139.4 124 57.3
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.4e-26 124.4 77 77.9
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 6.7e-24 115.5 73 69.9
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 3.4e-20 103.2 149 33.6
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 7.2e-18 95.5 53 86.8
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 2.7e-17 93.6 59 62.7
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.8e-16 90.9 56 58.9
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.8e-16 88.6 55 72.7
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 1.3e-14 84.7 117 41.9
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 8.0e-09 65.5 45 66.7
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 5.7e-07 59.3 101 37.6


User provided reference genes

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