Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G036500 Glycine max HOM05D000883 ORTHO05D022760 3.6e-42 174.5 88 100.0
VMungo0464G0855 Vigna mungo HOM05D000883 ORTHO05D008274 1.1e-33 146.4 85 84.7
Phvul.004G099800 Phaseolus vulgaris HOM05D000883 ORTHO05D008274 5.3e-33 144.1 85 82.4
Glyma.02G084300 Glycine max HOM05D000883 ORTHO05D008274 3.4e-32 141.4 88 84.1
Lalb_Chr19g0130371 Lupinus albus HOM05D000883 ORTHO05D008274 2.1e-29 132.1 77 84.4
arahy.Tifrunner.gnm1.ann1.8L230K Arachis hypogaea HOM05D000883 ORTHO05D008274 1.9e-27 125.6 77 77.9
Cc10_g14130 Coffea canephora HOM05D001639 ORTHO05D008274 2.8e-26 121.7 75 74.7
Atru.chr13.2240 Acer truncatum HOM05D001639 ORTHO05D008274 3.7e-26 121.3 81 67.9
Ciclev10001437m.g Citrus clementina HOM05D000883 ORTHO05D008274 3.7e-26 121.3 79 69.6
CiPaw.15G019200 Carya illinoinensis HOM05D001639 ORTHO05D008274 8.2e-26 120.2 80 68.8
arahy.Tifrunner.gnm1.ann1.8SN94U Arachis hypogaea HOM05D011683 ORTHO05D008274 1.1e-25 119.8 77 76.6
Cpa.g.sc49.41 Carica papaya HOM05D001639 ORTHO05D008274 1.1e-25 119.8 80 68.8
Medtr6g034515 Medicago truncatula HOM05D000883 ORTHO05D008274 1.1e-25 119.8 85 68.2
PGR044G2310 Punica granatum HOM05D001639 ORTHO05D008274 1.8e-25 119.0 74 78.4
THA.LOC104798867 Tarenaya hassleriana HOM05D001639 ORTHO05D008274 1.8e-25 119.0 77 72.7
Psat1g106760 Pisum sativum HOM05D000883 ORTHO05D008274 3.1e-25 118.2 80 68.8
QL02p024608 Quercus lobata HOM05D001639 ORTHO05D008274 3.1e-25 118.2 74 74.3
TAR381G0772 Trochodendron aralioides HOM05D001639 ORTHO05D008274 3.1e-25 118.2 74 74.3
MELO3C008392.2 Cucumis melo HOM05D000883 ORTHO05D008274 4.0e-25 117.9 77 70.1
CsaV3_6G029660 Cucumis sativus L. HOM05D000883 ORTHO05D008274 4.0e-25 117.9 77 70.1
Haze_17732 Corylus avellana HOM05D001639 ORTHO05D008274 5.3e-25 117.5 78 71.8
Lj2g0013114 Lotus japonicus HOM05D000883 ORTHO05D008274 5.3e-25 117.5 77 74.0
Sed0024209 Sechium edule HOM05D000883 ORTHO05D008274 5.3e-25 117.5 77 68.8
CSS0033416 Camellia sinensis var. sinensis HOM05D001639 ORTHO05D008274 1.2e-24 116.3 77 71.4
CSS0048578 Camellia sinensis var. sinensis HOM05D001639 ORTHO05D008274 1.2e-24 116.3 77 71.4
Cfa018342 Carpinus fangiana HOM05D001639 ORTHO05D008274 1.2e-24 116.3 78 70.5
Manes.18G089600 Manihot esculenta HOM05D001639 ORTHO05D008274 1.5e-24 115.9 80 68.8
Sabra05G0144900 Salix brachista HOM05D000883 ORTHO05D008274 2.0e-24 115.5 80 68.8
ClCG08G006600 Citrullus lanatus HOM05D000883 ORTHO05D008274 4.5e-24 114.4 77 66.2
Potri.005G189600 Populus trichocarpa HOM05D000883 ORTHO05D008274 4.5e-24 114.4 77 72.7
Duzib093G1790 Durio zibethinus HOM05D001639 ORTHO05D008274 7.6e-24 113.6 82 68.3
Nn5g28676 Nelumbo nucifera HOM05D001639 ORTHO05D008274 7.6e-24 113.6 74 70.3
TWI32G0210 Tripterygium wilfordii HOM05D001639 ORTHO05D008274 7.6e-24 113.6 80 65.0
Oeu014480.1 Olea europaea HOM05D001639 ORTHO05D008274 1.0e-23 113.2 75 69.3
CAN.G715.7 Capsicum annuum HOM05D001639 ORTHO05D008274 1.3e-23 112.8 75 72.0
Thecc.08G147300 Theobroma cacao HOM05D001639 ORTHO05D008274 1.3e-23 112.8 85 63.5
MSTRG.1084 Avicennia marina HOM05D001639 ORTHO05D008274 1.7e-23 112.5 75 70.7
Ca_19333_v3 Cicer arietinum L. HOM05D001639 ORTHO05D008274 1.7e-23 112.5 75 69.3
Sc02g0004300 Simmondsia chinensis HOM05D001639 ORTHO05D008274 1.7e-23 112.5 74 70.3
AL8G19740 Arabidopsis lyrata HOM05D000883 ORTHO05D008274 2.2e-23 112.1 80 65.0
Peaxi162Scf00263g00927 Petunia axillaris HOM05D001639 ORTHO05D008274 2.2e-23 112.1 76 73.7
Solyc04g071010.4 Solanum lycopersicum HOM05D000883 ORTHO05D008274 2.2e-23 112.1 86 67.4
Sopen04g026960 Solanum pennellii HOM05D000883 ORTHO05D008274 2.2e-23 112.1 86 67.4
PSO541G2792 Papaver somniferum HOM05D001639 ORTHO05D008274 2.9e-23 111.7 84 60.7
PGSC0003DMG401000790 Solanum tuberosum HOM05D000883 ORTHO05D008274 2.9e-23 111.7 86 67.4
PGSC0003DMG402000790 Solanum tuberosum HOM05D000883 ORTHO05D008274 2.9e-23 111.7 86 67.4
SalBow7G2168 Salvia bowleyana HOM05D001639 ORTHO05D008274 3.8e-23 111.3 75 70.7
SalBow7G3935 Salvia bowleyana HOM05D001639 ORTHO05D008274 3.8e-23 111.3 75 70.7
Thhalv10018646m.g Eutrema salsugineum HOM05D000883 ORTHO05D008274 8.4e-23 110.2 74 67.6
Gohir.D03G060611 Gossypium hirsutum HOM05D001639 ORTHO05D008274 8.4e-23 110.2 82 65.9
AT5G42130 Arabidopsis thaliana HOM05D001639 ORTHO05D008274 1.1e-22 109.8 80 63.8
COL.COLO4_08290 Corchorus olitorius HOM05D001639 ORTHO05D008274 1.1e-22 109.8 74 68.9
Migut.C00995 Erythranthe guttata HOM05D001639 ORTHO05D008274 1.1e-22 109.8 77 68.8
CANSAT25G1890 Cannabis sativa HOM05D000883 ORTHO05D008274 1.4e-22 109.4 86 65.1
AUR62026753 Chenopodium quinoa HOM05D000883 ORTHO05D008274 1.4e-22 109.4 80 60.0
TPR.G36635 Trifolium pratense HOM05D000883 ORTHO05D008274 1.4e-22 109.4 75 69.3
Actinidia01148 Actinidia chinensis HOM05D001639 ORTHO05D008274 1.9e-22 109.0 74 70.3
Gorai.013G111000 Gossypium raimondii HOM05D001639 ORTHO05D008274 1.9e-22 109.0 82 64.6
Gohir.A08G038900 Gossypium hirsutum HOM05D001639 ORTHO05D008274 3.2e-22 108.2 82 64.6
Gohir.D08G049100 Gossypium hirsutum HOM05D000883 ORTHO05D008274 3.2e-22 108.2 82 64.6
Gohir.D12G020701 Gossypium hirsutum HOM05D000883 ORTHO05D022760 3.2e-22 108.2 82 64.6
Gorai.004G048600 Gossypium raimondii HOM05D001639 ORTHO05D008274 3.2e-22 108.2 82 64.6
CARHR284310 Cardamine hirsuta HOM05D001639 ORTHO05D008274 4.2e-22 107.8 74 66.2
AUR62013522 Chenopodium quinoa HOM05D000883 ORTHO05D008274 4.2e-22 107.8 85 56.5
FvH4_2g14300 Fragaria vesca HOM05D001639 ORTHO05D008274 4.2e-22 107.8 76 69.7
FAN15G2052 Fragaria x ananassa HOM05D000883 ORTHO05D008274 4.2e-22 107.8 80 67.5
FAN20G0611 Fragaria x ananassa HOM05D000883 ORTHO05D008274 4.2e-22 107.8 76 69.7
SGA_v2.0_scaffold48G17996 Striga asiatica HOM05D001639 ORTHO05D008274 4.2e-22 107.8 75 68.0
Aa31LG9G12280 Aethionema arabicum HOM05D000189 ORTHO05D000474 5.5e-22 107.5 80 65.0
A10p03400 Brassica napus HOM05D000883 ORTHO05D008274 5.5e-22 107.5 77 66.2
BolC5t29094H Brassica oleracea HOM05D000883 ORTHO05D008274 5.5e-22 107.5 77 66.2
BraA10t42616Z Brassica rapa HOM05D000883 ORTHO05D008274 5.5e-22 107.5 77 66.2
Aqoxy6G00384 Aquilegia oxysepala HOM05D001639 ORTHO05D008274 9.3e-22 106.7 77 64.9
C05p03120 Brassica napus HOM05D000883 ORTHO05D008274 9.3e-22 106.7 77 66.2
Nitab4.5_0000299g0290 Nicotiana tabacum HOM05D001639 ORTHO05D008274 9.3e-22 106.7 76 69.7
Gohir.A02G112700 Gossypium hirsutum HOM05D001639 ORTHO05D008274 1.2e-21 106.3 74 68.9
Sp1g03830 Schrenkiella parvula HOM05D000883 ORTHO05D008274 1.2e-21 106.3 81 63.0
Carub.0008s0493 Capsella rubella HOM05D000883 ORTHO05D008274 2.1e-21 105.5 81 63.0
PSO675G7229 Papaver somniferum HOM05D001639 ORTHO05D008274 2.1e-21 105.5 77 62.3
Eucgr.F04259 Eucalyptus grandis HOM05D001639 ORTHO05D008274 2.7e-21 105.1 75 66.7
Prupe.8G024200 Prunus persica HOM05D001639 ORTHO05D008274 4.6e-21 104.4 66 72.7
RcHm_v2.0_Chr6g0276601 Rosa chinensis HOM05D000883 ORTHO05D008274 4.6e-21 104.4 76 67.1
Lsat_1_v5_gn_9_40341 Lactuca sativa HOM05D001639 ORTHO05D008274 3.9e-20 101.3 75 68.0
MBI19_g06155_MAGBIO Magnolia biondii HOM05D000883 ORTHO05D008274 5.1e-20 100.9 69 63.8
Sp5g25580 Schrenkiella parvula HOM05D000883 ORTHO05D008274 5.1e-20 100.9 73 61.6
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 6.7e-20 100.5 62 74.2
DCAR_014419 Daucus carota HOM05D001639 ORTHO05D008274 1.1e-19 99.8 66 66.7
MD05G1019200 Malus domestica HOM05D001639 ORTHO05D008274 1.9e-19 99.0 61 72.1
MD10G1020700 Malus domestica HOM05D001639 ORTHO05D008274 2.5e-19 98.6 61 72.1
Sabra02G0055200 Salix brachista HOM05D000883 ORTHO05D008274 2.5e-19 98.6 66 69.7
ATR0772G095 Amborella trichopoda HOM05D000883 ORTHO05D008274 4.3e-19 97.8 80 55.0
HanXRQChr11g0320361 Helianthus annuus HOM05D001639 ORTHO05D008274 5.7e-19 97.4 57 80.7
CDE06G0876 Ceratophyllum demersum HOM05D000645 ORTHO05D008274 7.4e-19 97.1 73 56.2
Lj7P367T38 Lonicera japonica HOM05D001639 ORTHO05D008274 9.7e-19 96.7 82 58.5
AUR62035553 Chenopodium quinoa HOM05D001639 ORTHO05D008274 6.3e-18 94.0 73 63.0
Dinv41106 Davidia involucrata HOM05D001639 ORTHO05D008274 6.3e-18 94.0 62 74.2
unitig_26.g9898 Utricularia gibba HOM05D000883 ORTHO05D008274 1.4e-17 92.8 77 53.2
Ah.05g167630 Amaranthus hybridus HOM05D001639 ORTHO05D008274 4.1e-17 91.3 68 60.3
DCAR_005701 Daucus carota HOM05D000883 ORTHO05D008274 6.9e-17 90.5 57 66.7
Sed0025312 Sechium edule HOM05D000883 ORTHO05D008274 1.5e-16 89.4 61 65.6
GSVIVG01001666001 Vitis vinifera HOM05D001639 ORTHO05D008274 2.6e-16 88.6 56 66.1
AUR62006073 Chenopodium quinoa HOM05D000442 ORTHO05D007032 5.9e-16 87.4 73 60.3
SMO119G0121 Selaginella moellendorffii HOM05D001639 ORTHO05D008274 1.0e-15 86.7 82 50.0
AagrBONN_evm.TU.Sc2ySwM_344.278 Anthoceros agrestis HOM05D001639 ORTHO05D008274 8.5e-15 83.6 68 52.9
AagrBONN_evm.TU.Sc2ySwM_344.286 Anthoceros agrestis HOM05D001639 ORTHO05D008274 8.5e-15 83.6 68 52.9
Mapoly0028s0023 Marchantia polymorpha HOM05D001639 ORTHO05D008274 1.1e-14 83.2 70 52.9
SEGI_38715 Sequoiadendron giganteum HOM05D000883 ORTHO05D008274 4.2e-14 81.3 74 58.1
HPP92_027066 Vanilla planifolia HOM05D001639 ORTHO05D008274 3.6e-13 78.2 51 62.7
Zm00001eb140180 Zea mays HOM05D000883 ORTHO05D008274 6.7e-12 73.9 72 52.8
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 8.8e-12 73.6 66 56.1
Os01g0964900 Oryza sativa ssp. japonica HOM05D000883 ORTHO05D008274 3.3e-11 71.6 51 60.8
Gohir.D11G252850 Gossypium hirsutum HOM05D000883 ORTHO05D022760 1.8e-09 65.9 47 61.7
AagrBONN_evm.TU.Sc2ySwM_117.1476 Anthoceros agrestis HOM05D001639 ORTHO05D008274 4.1e-09 64.7 69 46.4
Gohir.D01G115150 Gossypium hirsutum HOM05D000883 ORTHO05D022760 1.5e-08 62.8 47 59.6
Gohir.D04G188550 Gossypium hirsutum HOM05D000883 ORTHO05D022760 1.5e-08 62.8 47 59.6
Gorai.007G271500 Gossypium raimondii HOM05D000883 ORTHO05D022760 1.5e-08 62.8 47 59.6
Gorai.011G013900 Gossypium raimondii HOM05D002975 ORTHO05D047339 4.5e-08 61.2 53 64.2
SHI09429 Sapria himalayana HOM05D000883 ORTHO05D008274 1.0e-07 60.1 48 58.3
Mapoly0033s0136 Marchantia polymorpha HOM05D001639 ORTHO05D008274 1.7e-07 59.3 63 44.4
Gohir.D10G012350 Gossypium hirsutum HOM05D002975 ORTHO05D047339 3.8e-07 58.2 53 62.3
CsaV3_6G030840 Cucumis sativus L. HOM05D001639 ORTHO05D008274 5.0e-07 57.8 39 69.2
CBR_g32177 Chara braunii HOM05D001639 ORTHO05D008274 9.4e-06 53.5 73 37.0


User provided reference genes

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