Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 0.0e+00 2234.9 1123 100.0
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 0.0e+00 1743.0 1136 79.1
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 0.0e+00 1697.6 1137 77.3
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 0.0e+00 1655.6 932 90.3
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 3.3e-257 892.5 1161 45.0
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 5.5e-252 875.2 1163 44.6
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 4.7e-251 872.1 1163 44.4
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 1.8e-239 833.6 1162 42.3
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 5.0e-229 798.9 1167 41.3
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 6.6e-229 798.5 1171 42.5
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 1.6e-227 793.9 1151 41.1
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 6.2e-227 792.0 1173 42.1
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 1.4e-226 790.8 1171 42.5
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 3.4e-225 786.2 1170 41.2
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 7.5e-225 785.0 1169 40.9
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 9.5e-220 768.1 1164 40.9
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.2e-217 761.1 1158 40.2
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 8.3e-216 755.0 1159 40.7
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 1.7e-213 747.3 1141 40.1
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.1e-212 744.6 1192 39.4
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 1.6e-211 740.7 1191 39.3
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 8.1e-211 738.4 1144 39.9
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 8.1e-211 738.4 1160 40.5
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 1.8e-210 737.3 1153 40.1
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 5.8e-209 732.3 1156 39.5
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 7.6e-209 731.9 1153 39.9
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 4.1e-207 726.1 1151 39.0
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 9.2e-207 724.9 1156 38.8
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 3.9e-205 719.5 1159 39.3
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 1.5e-204 717.6 1154 38.9
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.8e-202 710.7 1169 38.7
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 1.7e-197 694.1 1091 39.2
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 2.3e-197 693.7 1163 39.6
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 3.9e-197 693.0 1161 39.7
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 1.6e-195 687.6 1183 39.3
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 3.6e-195 686.4 1167 38.2
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 5.3e-194 682.6 1101 39.7
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 9.0e-194 681.8 1152 38.5
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.2e-193 681.4 1147 38.1
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 2.6e-193 680.2 1194 38.6
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 9.3e-191 671.8 1163 35.5
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 7.9e-190 668.7 1157 36.9
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 2.3e-189 667.2 978 41.2
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 2.5e-188 663.7 1184 37.8
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.4e-186 657.1 1164 35.2
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 2.9e-184 650.2 1156 37.2
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 3.8e-184 649.8 1163 36.8
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 1.4e-183 647.9 1180 36.1
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.9e-183 647.5 1150 37.4
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 7.1e-183 645.6 1160 36.3
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 2.7e-182 643.7 1177 36.2
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 7.9e-182 642.1 1165 36.6
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 7.9e-182 642.1 1172 36.0
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 2.5e-180 637.1 1154 36.3
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 5.3e-178 629.4 1175 36.4
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 9.0e-178 628.6 1173 36.1
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 1.2e-177 628.2 1158 36.0
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 1.2e-177 628.2 1175 36.4
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 1.2e-177 628.2 1175 36.4
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 1.5e-177 627.9 1157 35.7
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 2.0e-177 627.5 1263 34.8
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 3.4e-177 626.7 1175 35.4
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 4.9e-176 622.9 1164 36.1
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 3.2e-175 620.2 1154 35.3
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 4.6e-174 616.3 1164 36.3
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 4.6e-174 616.3 1148 35.1
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 1.3e-173 614.8 1149 35.6
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 5.1e-173 612.8 1165 35.5
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 1.5e-172 611.3 1154 34.8
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 7.4e-172 609.0 1181 34.7
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 7.4e-172 609.0 1154 35.1
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 3.1e-170 603.6 931 40.2
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 2.0e-169 600.9 989 38.3
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 7.6e-169 599.0 1173 34.5
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 1.4e-167 594.7 1158 35.1
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 3.2e-167 593.6 1160 34.8
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 1.3e-165 588.2 1133 35.5
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 6.7e-165 585.9 1200 34.6
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 4.3e-164 583.2 1161 34.1
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 3.7e-163 580.1 1024 36.7
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 1.4e-157 561.6 1161 33.9
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 3.9e-157 560.1 1157 32.8
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 1.8e-154 551.2 1156 32.8
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 9.1e-154 548.9 909 37.5
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 7.7e-153 545.8 1174 33.3
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 9.4e-151 538.9 1099 33.9
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 7.4e-148 529.3 1150 33.1
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 4.2e-143 513.5 1207 30.9
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 6.3e-139 499.6 976 33.9
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 8.5e-136 489.2 1130 32.7
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.5e-124 451.8 307 78.2
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 2.2e-123 448.0 329 72.6
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 9.2e-122 442.6 1260 28.0
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.0e-121 441.4 898 35.6
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 1.0e-112 412.5 301 71.8
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 1.7e-112 411.8 307 69.1
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 3.9e-112 410.6 301 71.1
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.6e-110 405.2 301 70.8
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 6.2e-110 403.3 301 69.4
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 1.4e-109 402.1 301 69.1
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 8.3e-107 392.9 1229 26.7
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 8.6e-104 382.9 656 37.7
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 4.3e-103 380.6 896 31.2
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 5.6e-103 380.2 880 32.4
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 1.1e-95 355.9 301 63.5
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 6.2e-86 323.6 310 53.5
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 1.5e-84 318.9 310 52.6
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 1.9e-82 312.0 1258 26.2
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 2.5e-79 301.6 448 40.6
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 4.0e-77 294.3 805 29.8
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 6.9e-77 293.5 174 84.5
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 2.4e-74 285.0 1254 23.0
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 2.0e-68 265.4 175 76.6
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 9.3e-66 256.5 1131 25.3
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 4.8e-62 244.2 264 50.0
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 4.5e-60 237.7 360 42.5
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 2.2e-59 235.3 434 35.3
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 2.5e-58 231.9 167 73.7
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 9.7e-55 219.9 265 49.4
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 2.6e-52 211.8 983 25.5
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.7e-51 209.1 236 47.5
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 7.2e-50 203.8 175 62.3
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 1.1e-47 196.4 184 53.3
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 5.7e-47 194.1 414 33.3
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 1.4e-45 189.5 175 55.4
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 1.8e-45 189.1 291 38.1
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 1.3e-43 183.0 181 55.2
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 8.5e-43 180.3 198 54.0
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 4.4e-31 141.4 404 27.2
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.3e-30 139.8 124 63.7
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 4.1e-29 134.8 125 60.8
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 7.0e-29 134.0 502 25.9
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 3.6e-25 121.7 107 62.6
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 1.5e-23 116.3 280 28.9
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.3e-22 113.2 91 67.0
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 2.2e-19 102.4 223 30.9
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 5.5e-18 97.8 415 25.8
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 6.3e-14 84.3 241 27.0
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 2.1e-09 69.3 87 37.9
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 2.8e-09 68.9 86 38.4
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 3.0e-08 65.5 49 63.3
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 5.2e-08 64.7 45 66.7
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 1.2e-07 63.5 97 38.1
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 4.4e-07 61.6 45 64.4
BcaB03g11656 Brassica carinata HOM05D004959 ORTHO05D005961 4.9e-06 58.2 155 29.7


User provided reference genes

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