Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G030600 Glycine max HOM05D007605 ORTHO05D009572 6.5e-31 136.7 68 100.0
Glyma.08G364500 Glycine max HOM05D007605 ORTHO05D009572 2.2e-26 121.7 69 89.9
Glyma.18G297600 Glycine max HOM05D007605 ORTHO05D009572 3.1e-25 117.9 69 87.0
Glyma.19G073500 Glycine max HOM05D007605 ORTHO05D009572 2.0e-24 115.2 69 85.5
VMungo1383G0010 Vigna mungo HOM05D003647 ORTHO05D004182 1.1e-22 109.4 67 82.1
Phvul.008G005000 Phaseolus vulgaris HOM05D007605 ORTHO05D009572 3.6e-21 104.4 69 78.3
Ca_14651_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 1.8e-20 102.1 69 73.9
Lj6g0016727 Lotus japonicus HOM05D007605 ORTHO05D009572 1.8e-20 102.1 69 73.9
Lj1g0002800 Lotus japonicus HOM05D007605 ORTHO05D009572 2.3e-20 101.7 69 73.9
Lj6g0006319 Lotus japonicus HOM05D007605 ORTHO05D009572 2.3e-20 101.7 69 73.9
Ca_08431_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 4.0e-20 100.9 69 72.5
Lj1g0021920 Lotus japonicus HOM05D007605 ORTHO05D009572 8.8e-20 99.8 69 72.5
arahy.Tifrunner.gnm1.ann1.FBG7WK Arachis hypogaea HOM05D007605 ORTHO05D009572 1.2e-19 99.4 70 74.3
arahy.Tifrunner.gnm1.ann1.MPL0H7 Arachis hypogaea HOM05D007605 ORTHO05D009572 5.7e-19 97.1 68 73.5
Medtr7g091060 Medicago truncatula HOM05D007605 ORTHO05D009572 4.8e-18 94.0 69 66.7
TPR.G18242 Trifolium pratense HOM05D007605 ORTHO05D009572 1.4e-17 92.4 70 68.6
RcHm_v2.0_Chr4g0405791 Rosa chinensis HOM05D007605 ORTHO05D009572 2.4e-17 91.7 69 68.1
Haze_00851 Corylus avellana HOM05D007605 ORTHO05D009572 3.1e-17 91.3 69 68.1
CANSAT01G0287 Cannabis sativa HOM05D007605 ORTHO05D009572 4.1e-17 90.9 69 68.1
Cfa015674 Carpinus fangiana HOM05D007605 ORTHO05D009572 4.1e-17 90.9 69 68.1
Psat3g074320 Pisum sativum HOM05D007605 ORTHO05D009572 7.0e-17 90.1 69 65.2
SGA_v2.0_scaffold25G11005 Striga asiatica HOM05D000384 ORTHO05D009572 9.1e-17 89.7 69 65.2
FAN05G3507 Fragaria x ananassa HOM05D007605 ORTHO05D009572 1.2e-16 89.4 69 66.7
Rhsim09G0008600 Rhododendron simsii HOM05D007605 ORTHO05D009572 1.2e-16 89.4 64 70.3
RcHm_v2.0_Chr7g0232231 Rosa chinensis HOM05D007605 ORTHO05D009572 1.2e-16 89.4 69 66.7
Prupe.4G204500 Prunus persica HOM05D007605 ORTHO05D009572 1.6e-16 89.0 69 65.2
MD11G1225700 Malus domestica HOM05D007605 ORTHO05D009572 2.7e-16 88.2 69 66.7
FAN05G0946 Fragaria x ananassa HOM05D007605 ORTHO05D009572 3.5e-16 87.8 68 64.7
FAN14G0446 Fragaria x ananassa HOM05D007605 ORTHO05D009572 3.5e-16 87.8 69 65.2
Thecc.04G164300 Theobroma cacao HOM05D007605 ORTHO05D009572 4.5e-16 87.4 69 71.0
TWI63G1406 Tripterygium wilfordii HOM05D007605 ORTHO05D009572 7.7e-16 86.7 67 67.2
MD03G1210800 Malus domestica HOM05D007605 ORTHO05D009572 1.0e-15 86.3 69 63.8
Potri.019G096700 Populus trichocarpa HOM05D007605 ORTHO05D009572 1.0e-15 86.3 64 68.8
SalBow6G4154 Salvia bowleyana HOM05D007605 ORTHO05D009572 1.0e-15 86.3 69 65.2
Cpa.g.sc9.378 Carica papaya HOM05D007605 ORTHO05D009572 1.3e-15 85.9 69 68.1
CiPaw.01G168900 Carya illinoinensis HOM05D007605 ORTHO05D009572 1.3e-15 85.9 61 72.1
Potri.019G096500 Populus trichocarpa HOM05D007605 ORTHO05D009572 1.3e-15 85.9 62 69.4
FvH4_6g21131 Fragaria vesca HOM05D007605 ORTHO05D009572 1.7e-15 85.5 67 64.2
Sabra19G0108500 Salix brachista HOM05D000005 ORTHO05D000012 3.8e-15 84.3 64 67.2
CSS0027032 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 6.5e-15 83.6 58 74.1
CSS0028313 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 6.5e-15 83.6 58 74.1
Migut.N03059 Erythranthe guttata HOM05D007605 ORTHO05D009572 6.5e-15 83.6 69 60.9
Lalb_Chr04g0257371 Lupinus albus HOM05D007605 ORTHO05D009572 1.1e-14 82.8 57 73.7
Sabra13G0106700 Salix brachista HOM05D007605 ORTHO05D009572 1.1e-14 82.8 67 61.2
THA.LOC104802329 Tarenaya hassleriana HOM05D007605 ORTHO05D009572 1.1e-14 82.8 69 66.7
Duzib212G0337 Durio zibethinus HOM05D007605 ORTHO05D009572 1.5e-14 82.4 69 66.7
PGR142G0642 Punica granatum HOM05D007605 ORTHO05D009572 1.5e-14 82.4 64 64.1
Atru.chr4.1455 Acer truncatum HOM05D007605 ORTHO05D009572 1.9e-14 82.0 57 73.7
COL.COLO4_38114 Corchorus olitorius HOM05D007605 ORTHO05D009572 1.9e-14 82.0 59 72.9
Nn1g09550 Nelumbo nucifera HOM05D007605 ORTHO05D009572 4.2e-14 80.9 67 59.7
Sed0018718 Sechium edule HOM05D007605 ORTHO05D009572 5.5e-14 80.5 62 64.5
Sc13g0006890 Simmondsia chinensis HOM05D007605 ORTHO05D009572 5.5e-14 80.5 63 65.1
MELO3C011854.2 Cucumis melo HOM05D007605 ORTHO05D009572 7.2e-14 80.1 56 71.4
Nitab4.5_0007474g0060 Nicotiana tabacum HOM05D007605 ORTHO05D009572 7.2e-14 80.1 67 61.2
Carub.0004s2631 Capsella rubella HOM05D007605 ORTHO05D009572 9.4e-14 79.7 69 65.2
DCAR_030842 Daucus carota HOM05D007605 ORTHO05D009572 9.4e-14 79.7 58 67.2
AT2G43780 Arabidopsis thaliana HOM05D007605 ORTHO05D009572 1.2e-13 79.3 69 65.2
Ciclev10023247m.g Citrus clementina HOM05D007605 ORTHO05D009572 1.2e-13 79.3 57 68.4
Manes.05G136900 Manihot esculenta HOM05D007605 ORTHO05D009572 1.6e-13 79.0 57 71.9
Manes.08G010900 Manihot esculenta HOM05D007605 ORTHO05D009572 1.6e-13 79.0 57 71.9
AL4G42650 Arabidopsis lyrata HOM05D007605 ORTHO05D009572 2.1e-13 78.6 69 65.2
Glyma.17G205632 Glycine max HOM05D007605 ORTHO05D009572 2.1e-13 78.6 61 70.5
Eucgr.H04449 Eucalyptus grandis HOM05D007605 ORTHO05D009572 2.7e-13 78.2 57 71.9
Nitab4.5_0004700g0030 Nicotiana tabacum HOM05D001130 ORTHO05D001052 2.7e-13 78.2 67 59.7
Os12g0611700 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 2.7e-13 78.2 61 63.9
Peaxi162Scf00579g00018 Petunia axillaris HOM05D007605 ORTHO05D009572 3.6e-13 77.8 67 59.7
Gohir.A10G144600 Gossypium hirsutum HOM05D007605 ORTHO05D009572 4.7e-13 77.4 52 75.0
Sopen06g018580 Solanum pennellii HOM05D007605 ORTHO05D009572 6.1e-13 77.0 67 58.2
Atru.chr12.2308 Acer truncatum HOM05D007605 ORTHO05D009572 8.0e-13 76.6 57 70.2
AUR62002411 Chenopodium quinoa HOM05D007605 ORTHO05D009572 8.0e-13 76.6 60 61.7
PGSC0003DMG400016297 Solanum tuberosum HOM05D007605 ORTHO05D009572 8.0e-13 76.6 67 58.2
ECA248G2718 Erigeron canadensis HOM05D007605 ORTHO05D009572 1.0e-12 76.3 55 69.1
Ah.07g202920 Amaranthus hybridus HOM05D007605 ORTHO05D009572 1.8e-12 75.5 59 64.4
Os05g0103800 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 1.8e-12 75.5 61 62.3
MBI07_g11492_MAGBIO Magnolia biondii HOM05D007605 ORTHO05D009572 2.3e-12 75.1 57 66.7
Sp4g25850 Schrenkiella parvula HOM05D007605 ORTHO05D009572 2.3e-12 75.1 69 60.9
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 4.0e-12 74.3 55 70.9
Aqoxy4G02871 Aquilegia oxysepala HOM05D007605 ORTHO05D009572 4.0e-12 74.3 56 64.3
Thhalv10001711m.g Eutrema salsugineum HOM05D007605 ORTHO05D009572 4.0e-12 74.3 69 62.3
CARHR138960 Cardamine hirsuta HOM05D007605 ORTHO05D009572 5.2e-12 73.9 69 60.9
PSO573G0041 Papaver somniferum HOM05D007605 ORTHO05D009572 6.8e-12 73.6 58 65.5
vmacro23387 Vaccinium macrocarpon HOM05D007605 ORTHO05D009572 6.8e-12 73.6 47 74.5
Lsat_1_v5_gn_1_21060 Lactuca sativa HOM05D007605 ORTHO05D009572 8.8e-12 73.2 53 67.9
BcaB05g23281 Brassica carinata HOM05D007605 ORTHO05D009572 1.2e-11 72.8 69 58.0
EL10Ac3g06103 Beta vulgaris HOM05D007605 ORTHO05D009572 1.5e-11 72.4 63 58.7
BcaB01g03362 Brassica carinata HOM05D007605 ORTHO05D009572 2.6e-11 71.6 69 59.4
Gohir.D10G122400 Gossypium hirsutum HOM05D007605 ORTHO05D009572 2.6e-11 71.6 46 78.3
Gorai.011G134700 Gossypium raimondii HOM05D007605 ORTHO05D009572 2.6e-11 71.6 46 78.3
BcaC01g05214 Brassica carinata HOM05D007605 ORTHO05D009572 5.7e-11 70.5 69 58.0
C03p29150 Brassica napus HOM05D007605 ORTHO05D009572 5.7e-11 70.5 69 58.0
BolC3t15267H Brassica oleracea HOM05D007605 ORTHO05D009572 5.7e-11 70.5 69 58.0
ATR0743G065 Amborella trichopoda HOM05D007605 ORTHO05D009572 7.5e-11 70.1 61 55.7
A03p24460 Brassica napus HOM05D007605 ORTHO05D009572 7.5e-11 70.1 69 58.0
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 9.8e-11 69.7 55 65.5
QL10p056550 Quercus lobata HOM05D007605 ORTHO05D009572 9.8e-11 69.7 66 57.6
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 1.7e-10 68.9 56 64.3
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 1.7e-10 68.9 56 64.3
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 1.7e-10 68.9 56 64.3
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 2.2e-10 68.6 55 65.5
BraA03t11655Z Brassica rapa HOM05D007605 ORTHO05D009572 2.2e-10 68.6 55 65.5
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 2.2e-10 68.6 55 65.5
ClCG11G013540 Citrullus lanatus HOM05D007605 ORTHO05D009572 3.7e-10 67.8 49 69.4
GSVIVG01038176001 Vitis vinifera HOM05D007605 ORTHO05D009572 1.1e-09 66.2 50 64.0
Lj6C218G0 Lonicera japonica HOM05D000384 ORTHO05D000468 1.6e-08 62.4 41 73.2
CsaV3_5G030160 Cucumis sativus L. HOM05D007605 ORTHO05D009572 2.0e-08 62.0 41 75.6
Lsat_1_v5_gn_1_74540 Lactuca sativa HOM05D007605 ORTHO05D009572 4.5e-08 60.8 47 61.7


User provided reference genes

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