Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G028900 Glycine max HOM05D003117 ORTHO05D003612 3.8e-41 171.0 84 100.0
Glyma.10G001100 Glycine max HOM05D003117 ORTHO05D003612 9.2e-19 96.7 47 93.6
Phvul.007G279900 Phaseolus vulgaris HOM05D003117 ORTHO05D003612 6.0e-18 94.0 47 87.2
VMungo0720G0420 Vigna mungo HOM05D003117 ORTHO05D003612 1.3e-17 92.8 47 85.1
Lj6g0000554 Lotus japonicus HOM05D003117 ORTHO05D003612 1.7e-17 92.4 47 85.1
Lalb_Chr03g0037631 Lupinus albus HOM05D003117 ORTHO05D003612 2.3e-17 92.0 47 85.1
Lj6C653G15 Lonicera japonica HOM05D003117 ORTHO05D003612 3.0e-17 91.7 47 85.1
TAR633G0296 Trochodendron aralioides HOM05D003117 ORTHO05D003612 3.0e-17 91.7 47 85.1
arahy.Tifrunner.gnm1.ann1.7J7E83 Arachis hypogaea HOM05D003117 ORTHO05D003612 3.9e-17 91.3 47 83.0
arahy.Tifrunner.gnm1.ann1.EG5LEH Arachis hypogaea HOM05D003117 ORTHO05D003612 3.9e-17 91.3 47 83.0
Ciclev10004325m.g Citrus clementina HOM05D003117 ORTHO05D003612 6.6e-17 90.5 47 83.0
TWI09G1508 Tripterygium wilfordii HOM05D003117 ORTHO05D003612 6.6e-17 90.5 47 83.0
Dinv44609 Davidia involucrata HOM05D003117 ORTHO05D003612 1.5e-16 89.4 47 80.9
Cfa008401 Carpinus fangiana HOM05D003117 ORTHO05D003612 1.9e-16 89.0 47 83.0
CiPaw.01G192600 Carya illinoinensis HOM05D003117 ORTHO05D003612 1.9e-16 89.0 47 83.0
Ca_12210_v3 Cicer arietinum L. HOM05D003117 ORTHO05D003612 1.9e-16 89.0 47 80.9
Lalb_Chr01g0020821 Lupinus albus HOM05D003117 ORTHO05D003612 1.9e-16 89.0 47 83.0
Sabra08G0122300 Salix brachista HOM05D003117 ORTHO05D003612 1.9e-16 89.0 47 74.5
TPR.G22486 Trifolium pratense HOM05D003117 ORTHO05D003612 1.9e-16 89.0 47 80.9
Medtr5g042400 Medicago truncatula HOM05D003117 ORTHO05D003612 4.3e-16 87.8 47 78.7
vmacro08397 Vaccinium macrocarpon HOM05D003117 ORTHO05D003612 4.3e-16 87.8 47 83.0
COL.COLO4_15764 Corchorus olitorius HOM05D003117 ORTHO05D003612 5.6e-16 87.4 47 74.5
ATR0665G110 Amborella trichopoda HOM05D003117 ORTHO05D003612 7.3e-16 87.0 47 78.7
Migut.G00413 Erythranthe guttata HOM05D003117 ORTHO05D003612 7.3e-16 87.0 47 78.7
CSS0037722 Camellia sinensis var. sinensis HOM05D003117 ORTHO05D003612 1.2e-15 86.3 47 78.7
Potri.008G160400 Populus trichocarpa HOM05D003117 ORTHO05D003612 1.2e-15 86.3 47 74.5
Actinidia04495 Actinidia chinensis HOM05D003117 ORTHO05D003612 2.1e-15 85.5 47 76.6
CANSAT78G2141 Cannabis sativa HOM05D003117 ORTHO05D003612 2.1e-15 85.5 47 74.5
Rhsim04G0195100 Rhododendron simsii HOM05D003117 ORTHO05D003612 2.1e-15 85.5 47 78.7
GSVIVG01018091001 Vitis vinifera HOM05D003117 ORTHO05D003612 2.1e-15 85.5 82 56.1
CDE06G0682 Ceratophyllum demersum HOM05D003117 ORTHO05D003612 2.8e-15 85.1 47 72.3
Haze_11267 Corylus avellana HOM05D003117 ORTHO05D003612 3.6e-15 84.7 47 80.9
Eucgr.H00222 Eucalyptus grandis HOM05D003117 ORTHO05D003612 3.6e-15 84.7 81 55.6
Nn1g02533 Nelumbo nucifera HOM05D003117 ORTHO05D003612 3.6e-15 84.7 47 76.6
DCAR_027265 Daucus carota HOM05D003117 ORTHO05D003612 4.7e-15 84.3 47 78.7
Duzib151G0985 Durio zibethinus HOM05D003117 ORTHO05D003612 4.7e-15 84.3 47 72.3
MBI11_g15904_MAGBIO Magnolia biondii HOM05D003117 ORTHO05D003612 4.7e-15 84.3 47 74.5
Aqoxy5G00365 Aquilegia oxysepala HOM05D003117 ORTHO05D003612 6.2e-15 84.0 47 76.6
CSS0025557 Camellia sinensis var. sinensis HOM05D003117 ORTHO05D003612 6.2e-15 84.0 45 77.8
DCAR_030706 Daucus carota HOM05D003117 ORTHO05D003612 8.1e-15 83.6 45 75.6
Gohir.A09G221900 Gossypium hirsutum HOM05D003117 ORTHO05D003612 8.1e-15 83.6 47 70.2
Gohir.D09G224000 Gossypium hirsutum HOM05D003117 ORTHO05D003612 8.1e-15 83.6 47 70.2
Gorai.006G245500 Gossypium raimondii HOM05D003117 ORTHO05D003612 8.1e-15 83.6 47 70.2
Oeu064216.1 Olea europaea HOM05D003117 ORTHO05D003612 8.1e-15 83.6 47 72.3
Psat6g136360 Pisum sativum HOM05D003117 ORTHO05D003612 8.1e-15 83.6 47 78.7
arahy.Tifrunner.gnm1.ann1.6YLS1K Arachis hypogaea HOM05D003117 ORTHO05D003612 1.4e-14 82.8 80 52.5
Nitab4.5_0013033g0020 Nicotiana tabacum HOM05D003117 ORTHO05D003612 1.4e-14 82.8 46 73.9
Sabra08G0122200 Salix brachista HOM05D003117 ORTHO05D003612 1.4e-14 82.8 47 70.2
Cc03_g04630 Coffea canephora HOM05D003117 ORTHO05D003612 2.4e-14 82.0 47 74.5
BcaNung00363 Brassica carinata HOM05D003117 ORTHO05D003612 3.1e-14 81.6 46 67.4
BolC6t36899H Brassica oleracea HOM05D003117 ORTHO05D003612 3.1e-14 81.6 46 69.6
MELO3C014268.2 Cucumis melo HOM05D003117 ORTHO05D003612 3.1e-14 81.6 83 50.6
Manes.15G035400 Manihot esculenta HOM05D003117 ORTHO05D003612 3.1e-14 81.6 47 68.1
SGA_v2.0_scaffold88G27334 Striga asiatica HOM05D003117 ORTHO05D003612 3.1e-14 81.6 45 73.3
AT4G14570 Arabidopsis thaliana HOM05D003117 ORTHO05D003612 4.0e-14 81.3 46 67.4
BcaC08g44280 Brassica carinata HOM05D003117 ORTHO05D003612 4.0e-14 81.3 46 67.4
A05p16700 Brassica napus HOM05D003117 ORTHO05D003612 4.0e-14 81.3 46 67.4
C06p16990 Brassica napus HOM05D003117 ORTHO05D003612 4.0e-14 81.3 46 67.4
BraA05t20573Z Brassica rapa HOM05D003117 ORTHO05D003612 4.0e-14 81.3 46 67.4
CARHR220780 Cardamine hirsuta HOM05D003117 ORTHO05D003612 4.0e-14 81.3 46 67.4
Lj6C653G14 Lonicera japonica HOM05D003117 ORTHO05D003612 4.0e-14 81.3 47 72.3
Sp7g12660 Schrenkiella parvula HOM05D003117 ORTHO05D003612 4.0e-14 81.3 46 67.4
HPP92_024855 Vanilla planifolia HOM05D003117 ORTHO05D003612 4.0e-14 81.3 44 77.3
BcaB04g18243 Brassica carinata HOM05D003117 ORTHO05D003612 5.2e-14 80.9 46 67.4
ClCG06G006600 Citrullus lanatus HOM05D003117 ORTHO05D003612 5.2e-14 80.9 47 70.2
Lalb_Chr03g0037941 Lupinus albus HOM05D003117 ORTHO05D003612 5.2e-14 80.9 47 72.3
Peaxi162Scf00019g03119 Petunia axillaris HOM05D003117 ORTHO05D003612 5.2e-14 80.9 47 70.2
Phvul.007G280000 Phaseolus vulgaris HOM05D003117 ORTHO05D003612 5.2e-14 80.9 46 69.6
BcaC07g37831 Brassica carinata HOM05D003117 ORTHO05D003612 6.8e-14 80.5 46 65.2
BolC8t48215H Brassica oleracea HOM05D003117 ORTHO05D003612 6.8e-14 80.5 46 65.2
AUR62013049 Chenopodium quinoa HOM05D003117 ORTHO05D003612 8.9e-14 80.1 47 66.0
Peaxi162Scf00578g00525 Petunia axillaris HOM05D003117 ORTHO05D003612 8.9e-14 80.1 47 70.2
QL06p014983 Quercus lobata HOM05D003117 ORTHO05D003612 8.9e-14 80.1 46 78.3
AL7G41570 Arabidopsis lyrata HOM05D003117 ORTHO05D003612 1.2e-13 79.7 46 65.2
A08p11210 Brassica napus HOM05D003117 ORTHO05D003612 1.2e-13 79.7 46 67.4
BraA08t33117Z Brassica rapa HOM05D003117 ORTHO05D003612 1.2e-13 79.7 46 67.4
CsaV3_2G013240 Cucumis sativus L. HOM05D003117 ORTHO05D003612 1.2e-13 79.7 83 47.0
SalBow2G0949 Salvia bowleyana HOM05D003117 ORTHO05D003612 1.2e-13 79.7 81 49.4
unitig_748.g8319 Utricularia gibba HOM05D003117 ORTHO05D003612 1.2e-13 79.7 82 51.2
Lsat_1_v5_gn_5_67900 Lactuca sativa HOM05D003117 ORTHO05D003612 1.5e-13 79.3 46 69.6
MD16G1205300 Malus domestica HOM05D003117 ORTHO05D003612 1.5e-13 79.3 44 77.3
SalBow2G2395 Salvia bowleyana HOM05D003117 ORTHO05D003612 1.5e-13 79.3 46 71.7
BcaC09g50117 Brassica carinata HOM05D003117 ORTHO05D003612 2.0e-13 79.0 46 65.2
C01p28830 Brassica napus HOM05D003117 ORTHO05D003612 2.0e-13 79.0 46 65.2
BolC1t02811H Brassica oleracea HOM05D003117 ORTHO05D003612 2.0e-13 79.0 46 65.2
BraA01t02227Z Brassica rapa HOM05D003117 ORTHO05D003612 2.0e-13 79.0 46 65.2
Eucgr.H00221 Eucalyptus grandis HOM05D003117 ORTHO05D003612 2.0e-13 79.0 82 52.4
PSO210G5858 Papaver somniferum HOM05D003117 ORTHO05D003612 2.0e-13 79.0 79 57.0
Thecc.04G243500 Theobroma cacao HOM05D003117 ORTHO05D003612 2.0e-13 79.0 83 50.6
Ah.01g008550 Amaranthus hybridus HOM05D003117 ORTHO05D003612 2.6e-13 78.6 47 66.0
MSTRG.9934 Avicennia marina HOM05D003117 ORTHO05D003612 2.6e-13 78.6 47 66.0
Medtr1g040725 Medicago truncatula HOM05D003117 ORTHO05D003612 2.6e-13 78.6 42 78.6
PSO832G4175 Papaver somniferum HOM05D003117 ORTHO05D003612 2.6e-13 78.6 79 55.7
Psat0s4097g0040 Pisum sativum HOM05D003117 ORTHO05D003612 2.6e-13 78.6 43 79.1
RcHm_v2.0_Chr4g0389431 Rosa chinensis HOM05D003117 ORTHO05D003612 2.6e-13 78.6 44 75.0
Thhalv10024477m.g Eutrema salsugineum HOM05D003117 ORTHO05D003612 3.4e-13 78.2 46 65.2
PSO210G4691 Papaver somniferum HOM05D003117 ORTHO05D003612 3.4e-13 78.2 79 50.6
Prupe.1G026800 Prunus persica HOM05D003117 ORTHO05D003612 3.4e-13 78.2 44 75.0
PGSC0003DMG400006106 Solanum tuberosum HOM05D003117 ORTHO05D003612 3.4e-13 78.2 81 49.4
EL10Ac9g21398 Beta vulgaris HOM05D003117 ORTHO05D003612 4.4e-13 77.8 47 63.8
Sopen09g032010 Solanum pennellii HOM05D003117 ORTHO05D003612 4.4e-13 77.8 81 48.1
Carub.0007s2764 Capsella rubella HOM05D003117 ORTHO05D003612 5.8e-13 77.4 46 65.2
Glyma.10G001000 Glycine max HOM05D003117 ORTHO05D003612 5.8e-13 77.4 47 66.0
PGR142G3261 Punica granatum HOM05D003117 ORTHO05D003612 5.8e-13 77.4 45 66.7
VMungo0720G0109 Vigna mungo HOM05D003117 ORTHO05D003612 5.8e-13 77.4 81 49.4
Carub.0003s2319 Capsella rubella HOM05D003117 ORTHO05D003612 7.6e-13 77.0 46 65.2
HanXRQChr12g0363751 Helianthus annuus HOM05D003117 ORTHO05D003612 7.6e-13 77.0 47 68.1
MD16G1205600 Malus domestica HOM05D003117 ORTHO05D003612 9.9e-13 76.6 79 50.6
Psat6g102200 Pisum sativum HOM05D003117 ORTHO05D003612 9.9e-13 76.6 47 68.1
Sopen03g001380 Solanum pennellii HOM05D003117 ORTHO05D003612 9.9e-13 76.6 48 68.8
PGSC0003DMG400013444 Solanum tuberosum HOM05D003117 ORTHO05D003612 9.9e-13 76.6 48 68.8
AUR62010057 Chenopodium quinoa HOM05D003117 ORTHO05D003612 1.3e-12 76.3 47 63.8
FvH4_4g02060 Fragaria vesca HOM05D003117 ORTHO05D003612 1.3e-12 76.3 44 70.5
Peaxi162Scf00788g00312 Petunia axillaris HOM05D003117 ORTHO05D003612 1.3e-12 76.3 47 61.7
Sc25g0004180 Simmondsia chinensis HOM05D003117 ORTHO05D003612 1.3e-12 76.3 82 51.2
Solyc09g083130.3 Solanum lycopersicum HOM05D003117 ORTHO05D003612 1.3e-12 76.3 81 48.1
CAN.G638.79 Capsicum annuum HOM05D003117 ORTHO05D003612 1.7e-12 75.9 47 63.8
Medtr5g042410 Medicago truncatula HOM05D003117 ORTHO05D003612 1.7e-12 75.9 47 66.0
Aa31LG9G2760 Aethionema arabicum HOM05D003117 ORTHO05D003612 2.2e-12 75.5 46 63.0
QL06p015015 Quercus lobata HOM05D003117 ORTHO05D003612 2.2e-12 75.5 85 50.6
PGR142G2368 Punica granatum HOM05D003117 ORTHO05D003612 2.9e-12 75.1 45 64.4
Hund06426 Selenicereus undatus HOM05D003117 ORTHO05D003612 2.9e-12 75.1 47 61.7
TPR.G39892 Trifolium pratense HOM05D003117 ORTHO05D003612 2.9e-12 75.1 47 66.0
Nitab4.5_0001497g0060 Nicotiana tabacum HOM05D003117 ORTHO05D003612 3.8e-12 74.7 49 61.2
Solyc03g005340.4 Solanum lycopersicum HOM05D003117 ORTHO05D003612 3.8e-12 74.7 48 66.7
AUR62007946 Chenopodium quinoa HOM05D003117 ORTHO05D003612 4.9e-12 74.3 82 50.0
FAN12G3229 Fragaria x ananassa HOM05D003117 ORTHO05D003612 4.9e-12 74.3 44 68.2
Sopen09g032000 Solanum pennellii HOM05D003117 ORTHO05D003612 4.9e-12 74.3 47 59.6
FAN12G3237 Fragaria x ananassa HOM05D003117 ORTHO05D003612 6.4e-12 73.9 44 72.7
MD13G1203600 Malus domestica HOM05D003117 ORTHO05D003612 6.4e-12 73.9 44 72.7
MD16G1205500 Malus domestica HOM05D003117 ORTHO05D003612 6.4e-12 73.9 44 70.5
RcHm_v2.0_Chr4g0389461 Rosa chinensis HOM05D003117 ORTHO05D003612 6.4e-12 73.9 44 70.5
THA.LOC104822254 Tarenaya hassleriana HOM05D003117 ORTHO05D003612 6.4e-12 73.9 47 63.8
AUR62027936 Chenopodium quinoa HOM05D003117 ORTHO05D003612 8.4e-12 73.6 44 63.6
Zm00001eb048000 Zea mays HOM05D003117 ORTHO05D003612 8.4e-12 73.6 44 65.9
PSO210G4228 Papaver somniferum HOM05D003117 ORTHO05D003612 1.1e-11 73.2 79 48.1
Sed0002710 Sechium edule HOM05D003117 ORTHO05D003612 1.1e-11 73.2 46 58.7
Solyc09g083120.3 Solanum lycopersicum HOM05D003117 ORTHO05D003612 1.1e-11 73.2 47 59.6
AUR62003125 Chenopodium quinoa HOM05D003117 ORTHO05D003612 1.9e-11 72.4 82 48.8
Lsat_1_v5_gn_5_67880 Lactuca sativa HOM05D003117 ORTHO05D003612 1.9e-11 72.4 81 45.7
FAN22G1146 Fragaria x ananassa HOM05D003117 ORTHO05D003612 3.2e-11 71.6 44 68.2
MD16G1205200 Malus domestica HOM05D003117 ORTHO05D003612 3.2e-11 71.6 44 68.2
PSO210G0990 Papaver somniferum HOM05D003117 ORTHO05D003612 3.2e-11 71.6 91 51.6
CAN.G749.36 Capsicum annuum HOM05D003117 ORTHO05D003612 7.1e-11 70.5 81 45.7
FAN12G0712 Fragaria x ananassa HOM05D003117 ORTHO05D003612 7.1e-11 70.5 41 75.6
Carub.0210s0001 Capsella rubella HOM05D003117 ORTHO05D003612 2.1e-10 68.9 44 61.4
ECA233G5632 Erigeron canadensis HOM05D003117 ORTHO05D003612 2.1e-10 68.9 77 46.8
SMO347G0435 Selaginella moellendorffii HOM05D003117 ORTHO05D003612 6.0e-10 67.4 44 59.1
Pp3c2_30720 Physcomitrium patens HOM05D003117 ORTHO05D003612 1.0e-09 66.6 47 59.6
Mapoly0111s0036 Marchantia polymorpha HOM05D003117 ORTHO05D003612 1.3e-09 66.2 44 56.8
FAN17G1347 Fragaria x ananassa HOM05D003117 ORTHO05D003612 2.3e-09 65.5 47 57.4
Os10g0415800 Oryza sativa ssp. japonica HOM05D003117 ORTHO05D003612 3.0e-09 65.1 44 56.8
Pp3c7_25140 Physcomitrium patens HOM05D003117 ORTHO05D003612 3.9e-09 64.7 44 59.1
AagrBONN_evm.TU.Sc2ySwM_368.3180 Anthoceros agrestis HOM05D003117 ORTHO05D003612 6.6e-09 63.9 44 54.5
Nitab4.5_0001856g0040 Nicotiana tabacum HOM05D003117 ORTHO05D003612 5.6e-08 60.8 71 46.5
Zm00001eb223050 Zea mays HOM05D003117 ORTHO05D003612 7.3e-08 60.5 44 56.8
Psat4g201840 Pisum sativum HOM05D003117 ORTHO05D003612 4.7e-07 57.8 37 64.9
FAN22G0079 Fragaria x ananassa HOM05D000013 ORTHO05D000011 8.1e-07 57.0 42 57.1


User provided reference genes

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