Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 4370.5 2186 100.0
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 3748.7 2190 87.1
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 3727.2 2190 86.5
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 3417.1 2231 78.8
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 3310.0 2212 76.0
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 3308.1 2220 76.5
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 3271.5 2235 75.9
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 3264.9 2216 75.6
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 3257.2 2234 75.7
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 3244.9 2211 75.6
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 3229.5 2239 74.5
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2731.4 2237 64.1
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2727.2 2223 64.3
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2718.7 2234 64.0
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2640.5 2236 62.3
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2615.9 2243 62.3
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2591.6 2240 61.7
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2585.4 2228 61.3
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2583.9 2242 61.2
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2577.4 2244 61.0
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2565.8 2247 61.1
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2561.9 2244 60.5
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2546.5 2245 60.4
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2546.2 2246 60.4
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2543.1 2242 60.4
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2541.5 2252 60.7
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2529.6 2220 60.3
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2529.6 2234 59.9
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2521.5 2239 60.0
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2518.4 2259 59.6
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2511.1 2221 60.4
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2502.2 2244 59.6
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2494.5 2246 59.9
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2489.5 2241 59.0
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2487.2 2227 58.8
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2486.1 2241 58.9
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2476.4 2249 59.5
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2473.4 2235 58.3
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2448.7 2221 58.7
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2417.1 2213 58.3
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2412.9 2227 57.9
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2400.9 2220 57.0
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2400.5 2234 57.2
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2397.9 2235 57.4
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2380.9 2218 57.4
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2371.7 2241 56.8
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2369.7 2236 57.0
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2360.9 2237 57.2
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2353.2 2246 57.0
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2343.5 2245 56.9
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2338.5 2228 56.3
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2335.8 2239 56.8
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2334.7 2221 56.6
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2327.0 2225 56.5
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2321.6 2249 56.4
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2317.0 2234 55.7
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2305.0 2243 56.0
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2292.3 2269 55.5
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2290.8 2228 56.9
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2281.1 2239 55.0
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2281.1 2214 55.2
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2281.1 2274 55.3
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2280.4 2243 55.6
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2280.0 2226 56.7
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2275.7 2212 55.7
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2266.1 2225 56.0
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2263.4 2211 55.3
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2262.6 2210 55.3
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2262.6 2216 55.1
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2259.6 2211 55.1
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2259.6 2211 55.1
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2248.4 1835 63.9
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2245.7 2213 55.0
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2239.2 2213 54.9
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2239.2 2213 54.9
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2239.2 2221 54.8
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2238.8 2233 55.0
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2235.7 1892 61.7
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2229.5 1830 63.2
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2210.3 1823 63.0
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2136.7 2211 53.2
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2129.4 2230 54.0
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2100.5 2282 51.7
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2076.2 2045 55.4
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2068.1 1718 62.8
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 1987.6 2326 48.9
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 1957.6 2231 50.1
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 1947.6 2220 50.4
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1821.6 1104 85.3
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1795.4 2199 47.6
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1694.1 2404 43.1
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1674.1 1428 63.2
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1516.9 1705 49.9
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1458.4 1367 57.6
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1399.0 2328 39.2
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1382.1 2365 38.7
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1281.5 2174 38.8
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1257.7 2249 36.3
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1248.8 1200 55.5
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1158.3 1029 59.9
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1075.8 949 61.4
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 7.3e-309 1065.1 1062 54.5
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 1.7e-297 1027.3 1432 43.8
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 2.2e-252 877.5 2459 29.9
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 5.4e-243 846.3 981 50.1
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 1.2e-239 835.1 803 57.5
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 2.7e-234 817.4 858 50.6
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 2.6e-205 721.1 1320 37.3
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 3.6e-199 700.7 708 54.4
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 3.7e-175 620.9 997 40.3
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 4.1e-150 537.7 2153 26.8
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 1.1e-134 486.5 453 54.1
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 4.7e-82 311.6 385 49.6
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 5.8e-72 278.1 288 55.2
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 2.3e-68 266.2 322 47.8
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 8.1e-66 257.7 753 29.6
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.2e-61 243.8 312 45.8
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 4.8e-58 231.9 308 44.5
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 9.0e-57 227.6 138 82.6
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 2.1e-53 216.5 182 63.2
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 8.7e-52 211.1 240 47.5
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 6.3e-50 204.9 226 47.8
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 3.0e-44 186.0 114 86.0
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 4.3e-43 182.2 266 40.2
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 3.4e-40 172.6 99 86.9
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 1.6e-37 163.7 105 80.0
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 1.2e-32 147.5 284 35.6
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 5.0e-31 142.1 230 38.3
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.6e-29 137.1 479 27.1
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 2.1e-29 136.7 112 62.5
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 2.6e-24 119.8 166 43.4
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.1e-14 87.8 106 43.4
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 1.7e-10 73.9 413 23.2


User provided reference genes

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