Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G019400 Glycine max HOM05D007552 ORTHO05D009397 2.3e-241 839.0 600 100.0
Glyma.17G219900 Glycine max HOM05D007552 ORTHO05D009397 1.4e-217 760.0 595 91.1
VMungo1080G1651 Vigna mungo HOM05D007552 ORTHO05D009397 1.0e-143 514.6 587 72.7
Phvul.005G185300 Phaseolus vulgaris HOM05D007552 ORTHO05D009397 2.3e-140 503.4 582 76.5
Lj5g0015623 Lotus japonicus HOM05D007552 ORTHO05D009397 3.9e-87 326.6 554 63.4
Lalb_Chr03g0029771 Lupinus albus HOM05D007552 ORTHO05D009397 1.3e-79 301.6 568 64.4
Ca_25555_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 2.2e-61 241.1 479 53.0
Psat3g178720 Pisum sativum HOM05D007552 ORTHO05D009397 4.5e-59 233.4 570 46.7
Ca_26412_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 1.5e-57 228.4 468 53.2
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 3.9e-55 220.3 578 43.4
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 9.7e-54 215.7 562 34.9
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 9.1e-52 209.1 565 42.7
QL07p010391 Quercus lobata HOM05D007552 ORTHO05D009397 1.7e-50 204.9 569 54.3
Sed0018321 Sechium edule HOM05D007552 ORTHO05D009397 2.7e-48 197.6 569 50.6
Sopen01g032250 Solanum pennellii HOM05D007552 ORTHO05D009397 6.1e-48 196.4 554 53.8
TPR.G37558 Trifolium pratense HOM05D007552 ORTHO05D009397 8.0e-48 196.1 544 39.5
Solyc01g080450.4 Solanum lycopersicum HOM05D007552 ORTHO05D009397 4.0e-47 193.7 564 52.8
MSTRG.22501 Avicennia marina HOM05D007552 ORTHO05D009397 1.7e-45 188.3 401 52.9
CSS0020938 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 9.1e-44 182.6 559 52.6
GSVIVG01029542001 Vitis vinifera HOM05D007552 ORTHO05D009397 3.5e-43 180.6 552 53.4
Dinv11901 Davidia involucrata HOM05D007552 ORTHO05D009397 4.5e-43 180.3 571 52.4
MD09G1165000 Malus domestica HOM05D007552 ORTHO05D009397 1.0e-42 179.1 561 53.8
Manes.13G083600 Manihot esculenta HOM05D007552 ORTHO05D009397 1.0e-42 179.1 558 42.7
Gorai.012G013300 Gossypium raimondii HOM05D007552 ORTHO05D009397 2.9e-42 177.6 394 52.5
Gohir.A05G404600 Gossypium hirsutum HOM05D007552 ORTHO05D009397 1.5e-41 175.3 394 44.2
Gohir.D04G011100 Gossypium hirsutum HOM05D007552 ORTHO05D009397 1.5e-41 175.3 394 51.8
Sed0019272 Sechium edule HOM05D007552 ORTHO05D009397 1.5e-41 175.3 569 49.4
Duzib114G0042 Durio zibethinus HOM05D007552 ORTHO05D009397 3.2e-41 174.1 415 49.6
COL.COLO4_19487 Corchorus olitorius HOM05D007552 ORTHO05D009397 4.2e-41 173.7 585 49.4
Prupe.3G022400 Prunus persica HOM05D007552 ORTHO05D009397 7.2e-41 172.9 559 54.0
Hma1.2p1_0517F.1_g170780 Hydrangea macrophylla HOM05D007552 ORTHO05D009397 9.4e-41 172.6 396 49.7
Actinidia38807 Actinidia chinensis HOM05D007552 ORTHO05D009397 1.6e-40 171.8 552 53.8
Lj5P680T20 Lonicera japonica HOM05D007552 ORTHO05D009397 2.3e-39 167.9 402 51.7
Haze_13567 Corylus avellana HOM05D007552 ORTHO05D009397 1.5e-38 165.2 500 47.4
CsaV3_1G037150 Cucumis sativus L. HOM05D007552 ORTHO05D009397 2.6e-38 164.5 560 53.0
Nitab4.5_0000059g0200 Nicotiana tabacum HOM05D007552 ORTHO05D009397 9.8e-38 162.5 560 51.2
Nitab4.5_0007324g0010 Nicotiana tabacum HOM05D007552 ORTHO05D009397 4.9e-37 160.2 560 50.4
TAR626G0934 Trochodendron aralioides HOM05D007552 ORTHO05D009397 1.8e-36 158.3 396 48.0
PGSC0003DMG400032099 Solanum tuberosum HOM05D007552 ORTHO05D009397 2.4e-36 157.9 559 51.2
CAN.G889.11 Capsicum annuum HOM05D007552 ORTHO05D009397 3.1e-36 157.5 554 50.9
Eucgr.F04004 Eucalyptus grandis HOM05D007552 ORTHO05D009397 3.5e-35 154.1 392 52.8
Actinidia35910 Actinidia chinensis HOM05D007552 ORTHO05D009397 7.7e-35 152.9 558 52.3
QL08p045079 Quercus lobata HOM05D007552 ORTHO05D009397 7.7e-35 152.9 396 53.0
QL93p2016_0066 Quercus lobata HOM05D007552 ORTHO05D009397 1.5e-33 148.7 396 52.3
SalBow3G0468 Salvia bowleyana HOM05D007552 ORTHO05D009397 4.7e-32 143.7 402 49.3
TWI75G0828 Tripterygium wilfordii HOM05D007552 ORTHO05D009397 1.4e-31 142.1 548 40.1
Sc01g0005200 Simmondsia chinensis HOM05D007552 ORTHO05D009397 4.0e-31 140.6 396 50.0
CAN.G497.96 Capsicum annuum HOM05D007552 ORTHO05D009397 2.0e-30 138.3 469 29.6
Nitab4.5_0007324g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 2.6e-30 137.9 560 39.1
Ciclev10033582m.g Citrus clementina HOM05D007552 ORTHO05D009397 9.8e-30 136.0 478 49.4
Rhsim08G0249900 Rhododendron simsii HOM05D007552 ORTHO05D009397 1.7e-29 135.2 396 50.8
Ciclev10033432m.g Citrus clementina HOM05D007552 ORTHO05D009397 2.9e-29 134.4 478 47.5
PGR102G1581 Punica granatum HOM05D007552 ORTHO05D009397 1.8e-28 131.7 558 52.2
Migut.I01195 Erythranthe guttata HOM05D007552 ORTHO05D009397 2.4e-28 131.3 382 49.5
Peaxi162Scf00095g00416 Petunia axillaris HOM05D007552 ORTHO05D009397 3.2e-28 131.0 525 51.8
QL08p045116 Quercus lobata HOM05D007552 ORTHO05D009397 1.2e-27 129.0 380 51.6
Oeu058208.1 Olea europaea HOM05D007552 ORTHO05D009397 2.0e-27 128.3 505 48.1
Cc02_g21230 Coffea canephora HOM05D007552 ORTHO05D009397 4.6e-27 127.1 391 49.4
CANSAT54G1473 Cannabis sativa HOM05D007552 ORTHO05D009397 1.7e-26 125.2 561 48.3
MELO3C002831.2 Cucumis melo HOM05D007552 ORTHO05D009397 1.7e-26 125.2 402 48.5
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 1.9e-25 121.7 261 32.6
Carub.0001s1657 Capsella rubella HOM05D007552 ORTHO05D009397 1.9e-25 121.7 523 45.5
Os10g0578500 Oryza sativa ssp. japonica HOM05D007552 ORTHO05D009397 5.6e-25 120.2 394 43.1
MD17G1163100 Malus domestica HOM05D007552 ORTHO05D009397 9.5e-25 119.4 176 40.9
Nn1g09670 Nelumbo nucifera HOM05D007552 ORTHO05D009397 1.6e-24 118.6 208 38.5
SalBow3G2744 Salvia bowleyana HOM05D007552 ORTHO05D009397 6.1e-24 116.7 369 49.9
Aa31LG7G1270 Aethionema arabicum HOM05D007552 ORTHO05D009397 1.0e-23 115.9 554 38.1
Cpa.g.sc155.17 Carica papaya HOM05D007552 ORTHO05D009397 1.4e-23 115.5 106 59.4
MBI04_g20974_MAGBIO Magnolia biondii HOM05D007552 ORTHO05D009397 3.1e-23 114.4 152 42.8
THA.LOC104812327 Tarenaya hassleriana HOM05D007552 ORTHO05D009397 3.4e-22 110.9 553 36.9
vmacro06800 Vaccinium macrocarpon HOM05D007552 ORTHO05D009397 2.2e-21 108.2 176 38.6
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 3.2e-20 104.4 538 29.9
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 2.0e-19 101.7 519 23.5
AT1G16830 Arabidopsis thaliana HOM05D007552 ORTHO05D009397 1.3e-18 99.0 523 44.6
HPP92_024564 Vanilla planifolia HOM05D007552 ORTHO05D009397 5.6e-17 93.6 186 34.9
Zm00001eb025110 Zea mays HOM05D007552 ORTHO05D009397 5.6e-17 93.6 394 45.2
MD17G1163200 Malus domestica HOM05D007552 ORTHO05D009397 7.3e-17 93.2 242 56.2
Hund18597 Selenicereus undatus HOM05D007552 ORTHO05D009397 7.3e-17 93.2 212 31.6
BcaC05g25539 Brassica carinata HOM05D007552 ORTHO05D009397 2.8e-16 91.3 519 25.6
BolC5t30220H Brassica oleracea HOM05D007552 ORTHO05D009397 2.8e-16 91.3 519 25.6
CARHR017300 Cardamine hirsuta HOM05D007552 ORTHO05D009397 8.1e-16 89.7 538 35.7
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 8.1e-16 89.7 525 23.8
ATR0776G035 Amborella trichopoda HOM05D007552 ORTHO05D009397 4.0e-15 87.4 184 31.5
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 4.4e-14 84.0 518 20.3
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 4.4e-14 84.0 518 20.3
Medtr4g007150 Medicago truncatula HOM05D067157 ORTHO05D009397 5.4e-12 77.0 80 51.2
Sp1g14970 Schrenkiella parvula HOM05D007552 ORTHO05D009397 2.7e-11 74.7 526 34.0
TAR626G0440 Trochodendron aralioides HOM05D007552 ORTHO05D009397 2.7e-11 74.7 140 36.4
Actinidia21884 Actinidia chinensis HOM05D007552 ORTHO05D009397 1.0e-10 72.8 176 65.9
BcaB02g06673 Brassica carinata HOM05D007552 ORTHO05D009397 5.1e-10 70.5 525 33.9
TPR.G20566 Trifolium pratense HOM05D007552 ORTHO05D009397 1.9e-09 68.6 326 50.0
SEGI_35089 Sequoiadendron giganteum HOM05D007552 ORTHO05D009397 4.0e-07 60.8 86 34.9
TAR362G0754 Trochodendron aralioides HOM05D007552 ORTHO05D009397 4.0e-07 60.8 122 33.6


User provided reference genes

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