Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 3.0e-115 418.7 237 100.0
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 5.9e-63 245.0 185 77.8
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 1.3e-62 243.8 151 90.7
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 2.4e-48 196.4 185 64.3
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 1.9e-45 186.8 118 87.3
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 3.7e-41 172.6 199 57.8
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 3.0e-38 162.9 188 55.3
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 8.6e-38 161.4 189 56.1
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 3.4e-34 149.4 149 57.0
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 9.8e-34 147.9 99 77.8
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 4.9e-33 145.6 128 62.5
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 8.3e-33 144.8 128 61.7
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 1.1e-32 144.4 99 75.8
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 1.4e-32 144.1 95 78.9
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 1.4e-32 144.1 95 78.9
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 4.1e-32 142.5 151 55.6
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 5.4e-32 142.1 155 54.8
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 7.1e-32 141.7 125 62.4
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 2.1e-31 140.2 118 61.9
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.7e-31 139.8 130 58.5
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 2.7e-31 139.8 94 75.5
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 3.5e-31 139.4 128 59.4
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 4.6e-31 139.0 147 59.2
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 6.0e-31 138.7 131 61.1
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 7.8e-31 138.3 138 57.2
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 7.8e-31 138.3 138 57.2
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 7.8e-31 138.3 191 50.3
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 1.0e-30 137.9 110 68.2
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 2.3e-30 136.7 123 64.2
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 2.3e-30 136.7 122 64.8
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 2.3e-30 136.7 123 60.2
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 2.3e-30 136.7 133 59.4
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 3.0e-30 136.3 121 61.2
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.0e-30 136.3 123 62.6
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 3.9e-30 136.0 181 49.2
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 3.9e-30 136.0 92 73.9
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.9e-30 136.0 123 62.6
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 3.9e-30 136.0 122 64.8
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 3.9e-30 136.0 136 59.6
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 3.9e-30 136.0 136 60.3
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 6.6e-30 135.2 99 70.7
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 6.6e-30 135.2 92 73.9
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 6.6e-30 135.2 137 56.2
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 6.6e-30 135.2 130 58.5
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 8.6e-30 134.8 90 74.4
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 8.6e-30 134.8 90 74.4
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 8.6e-30 134.8 90 74.4
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 8.6e-30 134.8 92 76.1
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 8.6e-30 134.8 123 64.2
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 8.6e-30 134.8 122 62.3
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 8.6e-30 134.8 136 59.6
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 1.1e-29 134.4 132 61.4
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 1.5e-29 134.0 92 72.8
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 1.9e-29 133.7 119 62.2
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 1.9e-29 133.7 125 60.0
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 1.9e-29 133.7 126 57.9
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 2.5e-29 133.3 126 60.3
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 2.5e-29 133.3 92 76.1
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 2.5e-29 133.3 151 54.3
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 3.3e-29 132.9 92 72.8
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 4.3e-29 132.5 127 61.4
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 4.3e-29 132.5 156 51.3
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 4.3e-29 132.5 133 58.6
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 5.6e-29 132.1 133 60.2
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 7.3e-29 131.7 134 57.5
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 9.5e-29 131.3 129 58.1
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 9.5e-29 131.3 139 55.4
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.2e-28 131.0 198 47.5
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 1.2e-28 131.0 123 61.8
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.2e-28 131.0 184 48.4
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 1.6e-28 130.6 122 61.5
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 2.8e-28 129.8 126 59.5
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 3.6e-28 129.4 115 61.7
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 4.7e-28 129.0 139 55.4
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 6.2e-28 128.6 181 45.9
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 6.2e-28 128.6 92 70.7
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 6.2e-28 128.6 143 55.2
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 8.1e-28 128.3 181 45.3
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 8.1e-28 128.3 181 45.3
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 1.1e-27 127.9 86 73.3
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.1e-27 127.9 136 55.9
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.8e-27 127.1 160 50.6
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 3.1e-27 126.3 96 68.8
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 3.1e-27 126.3 122 58.2
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 4.0e-27 125.9 135 57.0
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 6.8e-27 125.2 160 50.0
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 8.9e-27 124.8 92 67.4
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 8.9e-27 124.8 92 68.5
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.2e-26 124.4 97 66.0
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 1.2e-26 124.4 80 78.8
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 1.5e-26 124.0 106 65.1
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.5e-26 124.0 126 56.3
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 2.0e-26 123.6 138 55.1
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 2.6e-26 123.2 91 69.2
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 2.6e-26 123.2 131 56.5
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 4.4e-26 122.5 117 59.8
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 4.4e-26 122.5 146 53.4
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 5.8e-26 122.1 122 59.0
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 7.6e-26 121.7 117 59.8
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 9.9e-26 121.3 149 50.3
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 7.1e-24 115.2 80 71.2
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 9.2e-24 114.8 155 47.7
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 9.2e-24 114.8 126 53.2
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 9.2e-24 114.8 126 54.0
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 2.1e-23 113.6 171 46.8
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 2.1e-23 113.6 123 55.3
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 3.5e-23 112.8 86 72.1
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 1.1e-21 107.8 77 68.8
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 4.0e-19 99.4 77 67.5
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 5.2e-19 99.0 100 54.0
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 5.2e-19 99.0 87 57.5
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 3.4e-18 96.3 72 66.7
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 8.4e-17 91.7 86 51.2
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.4e-16 90.9 106 46.2
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 9.3e-16 88.2 118 45.8
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 9.3e-16 88.2 86 51.2
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 4.6e-15 85.9 73 65.8
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 1.1e-11 74.7 74 55.4
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 5.3e-11 72.4 59 67.8
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 6.9e-11 72.0 62 61.3
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 6.9e-11 72.0 125 42.4
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 2.2e-09 67.0 117 32.5
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 3.8e-09 66.2 44 72.7
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 1.1e-08 64.7 55 58.2
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 7.1e-08 62.0 87 48.3
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 1.6e-07 60.8 72 52.8
AagrBONN_evm.TU.Sc2ySwM_368.656 Anthoceros agrestis HOM05D005889 ORTHO05D007495 3.9e-06 56.2 85 41.2
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 3.9e-06 56.2 70 48.6
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 8.7e-06 55.1 77 49.4


User provided reference genes

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