Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G012500 Glycine max HOM05D007350 ORTHO05D009323 1.1e-81 306.6 157 100.0
Glyma.13G070400 Glycine max HOM05D007350 ORTHO05D009323 7.6e-75 283.9 157 93.6
Phvul.004G019500 Phaseolus vulgaris HOM05D007350 ORTHO05D009323 6.3e-61 237.7 157 77.7
VMungo0464G1538 Vigna mungo HOM05D007350 ORTHO05D009323 5.9e-59 231.1 157 73.9
Lj2g0024385 Lotus japonicus HOM05D007350 ORTHO05D009323 5.1e-55 218.0 157 72.0
TPR.G2262 Trifolium pratense HOM05D007350 ORTHO05D009323 1.8e-52 209.5 156 71.2
Lalb_Chr02g0159761 Lupinus albus HOM05D007350 ORTHO05D009323 5.9e-51 204.5 154 69.5
Medtr6g007793 Medicago truncatula HOM05D007350 ORTHO05D009323 5.1e-47 191.4 155 65.2
arahy.Tifrunner.gnm1.ann1.7M0RFB Arachis hypogaea HOM05D007350 ORTHO05D009323 2.0e-43 179.5 159 63.5
Psat1g060320 Pisum sativum HOM05D007350 ORTHO05D009323 5.9e-43 177.9 156 62.8
TWI79G1045 Tripterygium wilfordii HOM05D007350 ORTHO05D009323 2.7e-32 142.5 165 50.9
Ca_04216_v3 Cicer arietinum L. HOM05D007350 ORTHO05D009323 8.0e-32 141.0 113 66.4
Gohir.D02G227300 Gossypium hirsutum HOM05D007350 ORTHO05D009323 1.0e-31 140.6 161 52.2
Prupe.8G169100 Prunus persica HOM05D007350 ORTHO05D009323 4.0e-31 138.7 130 55.4
Gorai.005G255200 Gossypium raimondii HOM05D007350 ORTHO05D009323 5.2e-31 138.3 161 51.6
RcHm_v2.0_Chr6g0278921 Rosa chinensis HOM05D007350 ORTHO05D009323 1.5e-30 136.7 138 54.3
Gohir.A03G205900 Gossypium hirsutum HOM05D007350 ORTHO05D009323 3.3e-30 135.6 160 51.2
Sabra04G0119700 Salix brachista HOM05D007350 ORTHO05D009323 7.5e-30 134.4 129 57.4
Haze_02104 Corylus avellana HOM05D007350 ORTHO05D009323 9.7e-30 134.0 175 47.4
Potri.004G177800 Populus trichocarpa HOM05D007350 ORTHO05D009323 9.7e-30 134.0 129 56.6
Manes.04G071000 Manihot esculenta HOM05D007350 ORTHO05D009323 2.2e-29 132.9 120 56.7
FvH4_2g15660 Fragaria vesca HOM05D007350 ORTHO05D009323 2.8e-29 132.5 129 55.0
FAN15G0854 Fragaria x ananassa HOM05D007350 ORTHO05D009323 3.7e-29 132.1 129 55.0
RcHm_v2.0_Chr6g0278901 Rosa chinensis HOM05D007350 ORTHO05D009323 3.7e-29 132.1 129 55.0
FAN24G2045 Fragaria x ananassa HOM05D007350 ORTHO05D009323 8.2e-29 131.0 129 54.3
COL.COLO4_17379 Corchorus olitorius HOM05D007350 ORTHO05D009323 1.4e-28 130.2 158 49.4
Duzib052G1005 Durio zibethinus HOM05D007350 ORTHO05D009323 1.4e-28 130.2 99 66.7
Thecc.02G055300 Theobroma cacao HOM05D007350 ORTHO05D009323 1.4e-28 130.2 97 66.0
FAN27G1653 Fragaria x ananassa HOM05D007350 ORTHO05D009323 3.1e-28 129.0 99 63.6
Cpa.g.sc20.115 Carica papaya HOM05D007350 ORTHO05D009323 7.0e-28 127.9 93 73.1
Actinidia18040 Actinidia chinensis HOM05D007350 ORTHO05D009323 1.6e-27 126.7 141 56.0
ClCG02G003950 Citrullus lanatus HOM05D007350 ORTHO05D009323 2.7e-27 125.9 161 49.1
Ciclev10029452m.g Citrus clementina HOM05D007350 ORTHO05D009323 3.5e-27 125.6 105 60.0
CiPaw.05G085400 Carya illinoinensis HOM05D007350 ORTHO05D009323 5.9e-27 124.8 131 51.9
Eucgr.G01372 Eucalyptus grandis HOM05D007350 ORTHO05D009323 5.9e-27 124.8 94 69.1
GSVIVG01023973001 Vitis vinifera HOM05D007350 ORTHO05D009323 1.3e-26 123.6 110 60.0
CANSAT78G0569 Cannabis sativa HOM05D007350 ORTHO05D009323 2.2e-26 122.9 118 55.9
Hma1.2p1_0032F.1_g019200 Hydrangea macrophylla HOM05D007350 ORTHO05D009323 2.2e-26 122.9 99 63.6
MD10G1127900 Malus domestica HOM05D007350 ORTHO05D009323 2.9e-26 122.5 95 66.3
QL11p052353 Quercus lobata HOM05D007350 ORTHO05D009323 2.9e-26 122.5 165 48.5
Actinidia20526 Actinidia chinensis HOM05D007350 ORTHO05D009323 6.5e-26 121.3 137 50.4
CsaV3_7G001160 Cucumis sativus L. HOM05D007350 ORTHO05D009323 3.2e-25 119.0 150 48.7
Rhsim03G0180300 Rhododendron simsii HOM05D007350 ORTHO05D009323 5.5e-25 118.2 100 65.0
MELO3C013337.2 Cucumis melo HOM05D007350 ORTHO05D009323 9.4e-25 117.5 92 63.0
Sc08g0002720 Simmondsia chinensis HOM05D007350 ORTHO05D009323 1.2e-24 117.1 154 44.8
THA.LOC104807801 Tarenaya hassleriana HOM05D007350 ORTHO05D009323 1.2e-24 117.1 153 46.4
Nn4g24553 Nelumbo nucifera HOM05D007350 ORTHO05D009323 6.1e-24 114.8 107 58.9
TAR374G1157 Trochodendron aralioides HOM05D007350 ORTHO05D009323 1.4e-23 113.6 99 59.6
Aqoxy3G04007 Aquilegia oxysepala HOM05D007350 ORTHO05D009323 1.8e-23 113.2 113 57.5
PGR042G2321 Punica granatum HOM05D007350 ORTHO05D009323 2.3e-23 112.8 110 58.2
Migut.B01238 Erythranthe guttata HOM05D007350 ORTHO05D009323 3.0e-23 112.5 95 64.2
Thhalv10026464m.g Eutrema salsugineum HOM05D007350 ORTHO05D009323 5.2e-23 111.7 162 42.6
MBI19_g01918_MAGBIO Magnolia biondii HOM05D007350 ORTHO05D009323 8.8e-23 110.9 130 48.5
Sed0025246 Sechium edule HOM05D007350 ORTHO05D009323 2.6e-22 109.4 93 58.1
Oeu025102.1 Olea europaea HOM05D007350 ORTHO05D009323 3.4e-22 109.0 106 55.7
SGA_v2.0_scaffold124G33608 Striga asiatica HOM05D007350 ORTHO05D009323 4.4e-22 108.6 104 57.7
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 5.7e-22 108.2 109 56.9
MSTRG.20506 Avicennia marina HOM05D007350 ORTHO05D009323 5.7e-22 108.2 97 61.9
Hund16245 Selenicereus undatus HOM05D007350 ORTHO05D009323 5.7e-22 108.2 128 51.6
PSO782G4816 Papaver somniferum HOM05D007350 ORTHO05D009323 9.8e-22 107.5 160 40.6
PSO063G0872 Papaver somniferum HOM05D007350 ORTHO05D009323 1.7e-21 106.7 86 59.3
Cc09_g10330 Coffea canephora HOM05D007350 ORTHO05D009323 2.8e-21 105.9 98 57.1
Sp7g37290 Schrenkiella parvula HOM05D007350 ORTHO05D009323 2.4e-20 102.8 83 61.4
Dinv09314 Davidia involucrata HOM05D007350 ORTHO05D009323 9.1e-20 100.9 124 43.5
AT4G38490 Arabidopsis thaliana HOM05D007350 ORTHO05D009323 1.2e-19 100.5 112 51.8
Atru.chr5.3441 Acer truncatum HOM05D007350 ORTHO05D009323 1.6e-19 100.1 108 53.7
AUR62013001 Chenopodium quinoa HOM05D007350 ORTHO05D009323 1.6e-19 100.1 83 60.2
ATR0598G093 Amborella trichopoda HOM05D007350 ORTHO05D009323 2.0e-19 99.8 95 56.8
CARHR294210 Cardamine hirsuta HOM05D007350 ORTHO05D009323 2.0e-19 99.8 85 61.2
Carub.0007s0037 Capsella rubella HOM05D007350 ORTHO05D009323 4.5e-19 98.6 76 64.5
Lsat_1_v5_gn_4_72021 Lactuca sativa HOM05D007350 ORTHO05D009323 4.5e-19 98.6 96 58.3
AL7G10350 Arabidopsis lyrata HOM05D007350 ORTHO05D009323 7.7e-19 97.8 79 62.0
HanXRQChr10g0298081 Helianthus annuus HOM05D007350 ORTHO05D009323 7.7e-19 97.8 97 56.7
AUR62010011 Chenopodium quinoa HOM05D007350 ORTHO05D009323 1.7e-18 96.7 84 58.3
BcaC01g00233 Brassica carinata HOM05D007350 ORTHO05D009323 3.8e-18 95.5 76 61.8
CAN.G112.14 Capsicum annuum HOM05D007350 ORTHO05D009323 3.8e-18 95.5 76 63.2
Nitab4.5_0005221g0020 Nicotiana tabacum HOM05D007350 ORTHO05D009323 3.3e-17 92.4 98 51.0
unitig_749.g14334 Utricularia gibba HOM05D000730 ORTHO05D000578 3.3e-17 92.4 100 55.0
A08p24200 Brassica napus HOM05D007350 ORTHO05D009323 7.2e-17 91.3 79 59.5
CDE05G3477 Ceratophyllum demersum HOM05D007350 ORTHO05D009323 2.1e-16 89.7 80 58.8
Os09g0450200 Oryza sativa ssp. japonica HOM05D007350 ORTHO05D009323 2.1e-16 89.7 76 61.8
Atru.chr6.83 Acer truncatum HOM05D007350 ORTHO05D009323 2.8e-16 89.4 115 48.7
BraA08t34374Z Brassica rapa HOM05D007350 ORTHO05D009323 2.8e-16 89.4 79 59.5
CSS0005535 Camellia sinensis var. sinensis HOM05D007350 ORTHO05D009323 2.8e-16 89.4 120 43.3
BolC3t19964H Brassica oleracea HOM05D007350 ORTHO05D009323 3.6e-16 89.0 79 58.2
BcaC01g00225 Brassica carinata HOM05D007350 ORTHO05D009323 4.7e-16 88.6 79 58.2
Hma1.2p1_0032F.1_g019210 Hydrangea macrophylla HOM05D007350 ORTHO05D009323 6.1e-16 88.2 63 73.0
Nitab4.5_0002598g0070 Nicotiana tabacum HOM05D007350 ORTHO05D009323 8.0e-16 87.8 98 51.0
Solyc05g050720.4 Solanum lycopersicum HOM05D007350 ORTHO05D009323 8.0e-16 87.8 98 50.0
Sopen05g029130 Solanum pennellii HOM05D007350 ORTHO05D009323 8.0e-16 87.8 98 50.0
C03p77120 Brassica napus HOM05D007350 ORTHO05D009323 1.0e-15 87.4 79 57.0
RcHm_v2.0_Chr6g0278961 Rosa chinensis HOM05D007350 ORTHO05D009323 8.9e-15 84.3 62 56.5
ECA234G1892 Erigeron canadensis HOM05D007350 ORTHO05D009323 1.5e-14 83.6 163 38.0
MD10G1128000 Malus domestica HOM05D007350 ORTHO05D009323 1.7e-13 80.1 69 66.7
CDE11G0403 Ceratophyllum demersum HOM05D007350 ORTHO05D009323 2.2e-13 79.7 62 67.7
SalBow5G3345 Salvia bowleyana HOM05D007350 ORTHO05D009323 5.0e-10 68.6 69 47.8
DCAR_004401 Daucus carota HOM05D000250 ORTHO05D000625 1.5e-09 67.0 63 47.6
Pp3c6_16710 Physcomitrium patens HOM05D007350 ORTHO05D009323 2.8e-08 62.8 79 43.0
Mapoly0060s0112 Marchantia polymorpha HOM05D007350 ORTHO05D009323 1.4e-07 60.5 58 51.7
SEGI_00987 Sequoiadendron giganteum HOM05D007350 ORTHO05D009323 1.8e-07 60.1 84 40.5
HPP92_012658 Vanilla planifolia HOM05D007350 ORTHO05D009323 3.0e-07 59.3 90 40.0


User provided reference genes

Program Settings