Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 1.2e-86 323.2 167 100.0
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 1.3e-61 240.0 164 76.2
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 6.7e-29 131.3 140 50.0
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 2.0e-28 129.8 149 53.0
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 1.1e-26 124.0 156 48.1
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 2.4e-26 122.9 142 48.6
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 8.5e-24 114.4 166 43.4
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 1.6e-22 110.2 136 45.6
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 2.1e-22 109.8 166 43.4
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 2.1e-22 109.8 137 49.6
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 2.1e-22 109.8 115 52.2
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 3.6e-22 109.0 134 47.0
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 8.0e-22 107.8 162 40.1
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 3.0e-21 105.9 166 40.4
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 1.1e-20 104.0 139 43.2
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 9.7e-20 100.9 145 40.7
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 9.7e-20 100.9 147 42.2
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 1.7e-19 100.1 147 43.5
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 2.8e-19 99.4 145 40.7
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 3.7e-19 99.0 176 38.6
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 3.7e-19 99.0 128 43.0
Phvul.004G012300 Phaseolus vulgaris HOM05D005169 ORTHO05D006436 6.3e-19 98.2 158 46.2
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 8.2e-19 97.8 179 38.5
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 1.1e-18 97.4 159 39.0
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 1.4e-18 97.1 149 43.6
VMungo0464G1178 Vigna mungo HOM05D005169 ORTHO05D006436 1.8e-18 96.7 171 42.7
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 3.1e-18 95.9 177 36.7
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 5.3e-18 95.1 140 37.9
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 5.3e-18 95.1 151 39.1
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 7.0e-18 94.7 151 39.1
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.2e-17 94.0 160 37.5
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.2e-17 94.0 148 41.2
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 1.2e-17 94.0 166 36.7
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 1.2e-17 94.0 168 38.7
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 1.6e-17 93.6 133 38.3
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 1.6e-17 93.6 156 39.1
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 1.6e-17 93.6 148 38.5
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.0e-17 93.2 158 38.0
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 2.6e-17 92.8 159 37.1
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 2.6e-17 92.8 148 39.9
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 2.6e-17 92.8 147 40.8
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 7.7e-17 91.3 140 39.3
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 7.7e-17 91.3 141 37.6
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 7.7e-17 91.3 142 39.4
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 7.7e-17 91.3 160 40.6
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 1.0e-16 90.9 151 37.1
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 1.0e-16 90.9 158 39.2
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 1.7e-16 90.1 155 40.0
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 2.2e-16 89.7 152 40.8
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 2.2e-16 89.7 158 35.4
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 2.2e-16 89.7 175 35.4
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 2.2e-16 89.7 166 37.3
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 2.9e-16 89.4 157 35.7
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 2.9e-16 89.4 147 42.2
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 3.8e-16 89.0 129 38.8
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 3.8e-16 89.0 147 37.4
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 3.8e-16 89.0 168 36.3
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 6.5e-16 88.2 158 36.7
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 6.5e-16 88.2 158 36.7
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 6.5e-16 88.2 143 39.9
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 8.5e-16 87.8 157 35.0
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 1.5e-15 87.0 160 37.5
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 1.9e-15 86.7 180 36.7
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 2.5e-15 86.3 157 34.4
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 2.5e-15 86.3 175 34.3
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 4.2e-15 85.5 133 42.1
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 9.4e-15 84.3 165 35.8
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 1.2e-14 84.0 171 30.4
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.2e-14 84.0 156 37.8
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.2e-14 84.0 167 34.7
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.6e-14 83.6 160 32.5
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 2.1e-14 83.2 178 33.7
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 2.1e-14 83.2 140 39.3
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 2.7e-14 82.8 141 37.6
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 3.6e-14 82.4 198 33.8
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 3.6e-14 82.4 153 35.3
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 8.0e-14 81.3 151 37.7
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 8.0e-14 81.3 179 36.9
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 1.4e-13 80.5 150 38.7
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 1.8e-13 80.1 158 37.3
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 1.8e-13 80.1 144 35.4
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 2.3e-13 79.7 152 38.8
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 3.0e-13 79.3 176 36.9
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 3.0e-13 79.3 176 36.9
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 3.0e-13 79.3 150 36.0
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 4.0e-13 79.0 134 36.6
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 5.2e-13 78.6 168 32.1
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 5.2e-13 78.6 156 38.5
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 6.7e-13 78.2 175 36.6
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 6.7e-13 78.2 175 36.6
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 6.7e-13 78.2 147 34.0
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 6.7e-13 78.2 127 37.0
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 6.7e-13 78.2 76 52.6
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 8.8e-13 77.8 175 36.6
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 8.8e-13 77.8 140 36.4
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 1.2e-12 77.4 177 35.0
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 1.2e-12 77.4 131 39.7
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 2.0e-12 76.6 151 36.4
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 2.6e-12 76.3 148 34.5
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 3.3e-12 75.9 176 31.8
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 4.4e-12 75.5 144 34.0
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 7.5e-12 74.7 127 38.6
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 1.7e-11 73.6 121 42.1
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 3.7e-11 72.4 159 34.6
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 4.8e-11 72.0 148 35.8
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 8.2e-11 71.2 56 60.7
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.1e-10 70.9 171 33.3
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 1.1e-10 70.9 143 35.0
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 1.4e-10 70.5 127 37.0
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 1.8e-10 70.1 145 37.2
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 2.4e-10 69.7 188 33.0
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 3.1e-10 69.3 201 29.9
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 5.3e-10 68.6 161 31.1
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 9.1e-10 67.8 174 32.2
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 2.0e-09 66.6 188 30.9
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 3.5e-09 65.9 175 31.4
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 4.5e-09 65.5 148 33.1
HPP92_008039 Vanilla planifolia HOM05D005169 ORTHO05D006436 4.5e-09 65.5 151 31.1
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 5.9e-09 65.1 163 31.9
SEGI_19138 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 2.9e-08 62.8 119 35.3
arahy.Tifrunner.gnm1.ann1.SA5TEJ Arachis hypogaea HOM05D005169 ORTHO05D006436 3.8e-08 62.4 187 31.0
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 6.5e-08 61.6 94 42.6
TPR.G35379 Trifolium pratense HOM05D005169 ORTHO05D006436 6.5e-08 61.6 86 46.5
arahy.Tifrunner.gnm1.ann1.HH7AL9 Arachis hypogaea HOM05D005169 ORTHO05D006436 1.9e-07 60.1 168 33.3
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 2.5e-07 59.7 212 27.4
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 2.5e-07 59.7 190 30.0
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 7.2e-07 58.2 69 43.5
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 1.6e-06 57.0 187 28.9
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 2.1e-06 56.6 161 27.3
Zm00001eb157680 Zea mays HOM05D005169 ORTHO05D006436 2.7e-06 56.2 138 28.3
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 3.6e-06 55.8 177 31.1
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 6.1e-06 55.1 143 30.1


User provided reference genes

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