Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G004600 Glycine max HOM05D005666 ORTHO05D007183 0.0e+00 1286.2 642 100.0
Glyma.05G003600 Glycine max HOM05D005666 ORTHO05D007183 0.0e+00 1206.8 642 94.1
Phvul.004G006900 Phaseolus vulgaris HOM05D005666 ORTHO05D007183 0.0e+00 1140.9 642 88.2
VMungo0464G0315 Vigna mungo HOM05D005666 ORTHO05D007183 0.0e+00 1116.7 642 87.4
TPR.G14074 Trifolium pratense HOM05D005666 ORTHO05D007183 3.4e-307 1057.7 642 82.2
Medtr8g094170 Medicago truncatula HOM05D005666 ORTHO05D007183 4.5e-299 1030.8 642 81.2
Lj2g0025454 Lotus japonicus HOM05D005666 ORTHO05D007183 3.2e-297 1024.6 642 80.8
Ca_04159_v3 Cicer arietinum L. HOM05D005666 ORTHO05D007183 3.9e-295 1017.7 627 81.5
Lalb_Chr12g0199101 Lupinus albus HOM05D005666 ORTHO05D007183 3.8e-290 1001.1 643 78.5
Lalb_Chr13g0300491 Lupinus albus HOM05D005666 ORTHO05D007183 1.1e-284 983.0 643 76.8
arahy.Tifrunner.gnm1.ann1.XQUA9L Arachis hypogaea HOM05D005666 ORTHO05D007183 1.2e-278 963.0 640 74.5
Psat1g054440 Pisum sativum HOM05D005666 ORTHO05D007183 5.7e-278 960.7 606 79.7
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 8.6e-266 920.2 622 74.0
QL02p074714 Quercus lobata HOM05D005666 ORTHO05D007183 2.6e-254 882.1 650 67.1
Prupe.3G291700 Prunus persica HOM05D005666 ORTHO05D007183 1.2e-251 873.2 652 66.3
MD17G1027000 Malus domestica HOM05D005666 ORTHO05D007183 9.8e-246 853.6 646 65.2
Gorai.012G064300 Gossypium raimondii HOM05D005666 ORTHO05D007183 8.3e-245 850.5 652 65.8
Gohir.D04G057600 Gossypium hirsutum HOM05D005666 ORTHO05D007183 2.4e-244 849.0 652 65.6
CANSAT64G2468 Cannabis sativa HOM05D005666 ORTHO05D007183 2.3e-242 842.4 650 64.3
Haze_10618 Corylus avellana HOM05D005666 ORTHO05D007183 8.6e-242 840.5 635 66.3
MD09G1027000 Malus domestica HOM05D005666 ORTHO05D007183 1.9e-241 839.3 646 64.2
Atru.chr6.2394 Acer truncatum HOM05D005666 ORTHO05D007183 2.6e-238 828.9 649 63.6
Cpa.g.sc130.81 Carica papaya HOM05D005666 ORTHO05D007183 9.9e-238 827.0 652 63.7
Duzib147G1248 Durio zibethinus HOM05D005666 ORTHO05D007183 1.3e-237 826.6 652 63.7
RcHm_v2.0_Chr2g0172791 Rosa chinensis HOM05D005666 ORTHO05D007183 4.9e-237 824.7 676 62.0
FvH4_6g51190 Fragaria vesca HOM05D005666 ORTHO05D007183 1.2e-235 820.1 676 61.1
FAN05G0542 Fragaria x ananassa HOM05D005666 ORTHO05D007183 1.2e-235 820.1 673 61.1
Manes.17G112200 Manihot esculenta HOM05D005666 ORTHO05D007183 2.7e-235 818.9 651 63.4
FAN14G3607 Fragaria x ananassa HOM05D005666 ORTHO05D007183 3.5e-235 818.5 676 61.1
Thecc.04G017300 Theobroma cacao HOM05D005666 ORTHO05D007183 3.5e-235 818.5 643 63.1
FAN09G4801 Fragaria x ananassa HOM05D005666 ORTHO05D007183 2.3e-234 815.8 676 60.8
Gohir.A05G355700 Gossypium hirsutum HOM05D005666 ORTHO05D007183 5.1e-234 814.7 632 65.5
Potri.001G345200 Populus trichocarpa HOM05D005666 ORTHO05D007183 5.1e-234 814.7 653 62.2
FAN02G4175 Fragaria x ananassa HOM05D005666 ORTHO05D007183 1.5e-233 813.1 685 60.3
CiPaw.03G043800 Carya illinoinensis HOM05D005666 ORTHO05D007183 3.3e-233 812.0 651 62.1
GSVIVG01032407001 Vitis vinifera HOM05D005666 ORTHO05D007183 2.8e-232 808.9 644 63.8
CsaV3_5G027130 Cucumis sativus L. HOM05D005666 ORTHO05D007183 1.1e-231 807.0 651 59.8
TWI56G0621 Tripterygium wilfordii HOM05D005666 ORTHO05D007183 1.1e-231 807.0 653 62.5
Sabra16G0224200 Salix brachista HOM05D005666 ORTHO05D007183 3.1e-231 805.4 651 62.5
Actinidia35772 Actinidia chinensis HOM05D005666 ORTHO05D007183 2.0e-230 802.7 652 62.6
Ciclev10014455m.g Citrus clementina HOM05D005666 ORTHO05D007183 2.0e-230 802.7 648 63.1
COL.COLO4_29116 Corchorus olitorius HOM05D005666 ORTHO05D007183 3.4e-230 802.0 675 61.2
CSS0006540 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 7.6e-230 800.8 652 62.7
Hma1.2p1_0999F.1_g246210 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 9.9e-230 800.4 643 62.2
MELO3C021580.2 Cucumis melo HOM05D005666 ORTHO05D007183 1.7e-229 799.7 651 59.4
ClCG09G019260 Citrullus lanatus HOM05D005666 ORTHO05D007183 1.9e-228 796.2 651 60.2
TAR371G0349 Trochodendron aralioides HOM05D005666 ORTHO05D007183 2.5e-225 785.8 652 61.0
Sed0018750 Sechium edule HOM05D005666 ORTHO05D007183 2.1e-224 782.7 651 59.4
vmacro18287 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 2.4e-223 779.2 650 61.5
Rhsim10G0213300 Rhododendron simsii HOM05D005666 ORTHO05D007183 2.4e-220 769.2 647 60.1
PGR083G1531 Punica granatum HOM05D005666 ORTHO05D007183 1.0e-218 763.8 641 59.9
Eucgr.L01920 Eucalyptus grandis HOM05D005666 ORTHO05D007183 3.3e-217 758.8 649 58.1
Hma1.2p1_0999F.1_g246220 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 2.8e-216 755.7 593 63.7
Sc03g0007440 Simmondsia chinensis HOM05D005666 ORTHO05D007183 1.8e-215 753.1 642 59.5
Migut.K01395 Erythranthe guttata HOM05D005666 ORTHO05D007183 1.2e-214 750.4 644 59.3
Lju41A42G100 Lonicera japonica HOM05D005666 ORTHO05D007183 4.5e-214 748.4 613 61.0
Rhsim08G0049000 Rhododendron simsii HOM05D005666 ORTHO05D007183 5.8e-214 748.0 630 60.5
Cc07_g01670 Coffea canephora HOM05D005666 ORTHO05D007183 9.9e-214 747.3 650 58.9
AUR62026681 Chenopodium quinoa HOM05D005666 ORTHO05D007183 3.5e-211 738.8 652 58.3
PGSC0003DMG400006959 Solanum tuberosum HOM05D005666 ORTHO05D007183 1.5e-209 733.4 651 58.8
Ah.05g168070 Amaranthus hybridus HOM05D005666 ORTHO05D007183 1.3e-208 730.3 642 56.9
CAN.G1057.3 Capsicum annuum HOM05D005666 ORTHO05D007183 4.8e-208 728.4 648 57.4
Sopen02g016930 Solanum pennellii HOM05D005666 ORTHO05D007183 6.2e-208 728.0 663 57.6
Hund22837 Selenicereus undatus HOM05D005666 ORTHO05D007183 6.9e-207 724.5 651 56.4
Nn3g16730 Nelumbo nucifera HOM05D005666 ORTHO05D007183 1.7e-205 719.9 636 58.6
Aqoxy3G01199 Aquilegia oxysepala HOM05D005666 ORTHO05D007183 3.2e-204 715.7 653 56.4
Nitab4.5_0008365g0020 Nicotiana tabacum HOM05D005666 ORTHO05D007183 9.3e-204 714.1 653 57.4
SalBow7G2092 Salvia bowleyana HOM05D005666 ORTHO05D007183 1.0e-202 710.7 647 56.1
SGA_v2.0_scaffold47G17503 Striga asiatica HOM05D005666 ORTHO05D007183 2.3e-202 709.5 641 57.4
ECA246G2761 Erigeron canadensis HOM05D005666 ORTHO05D007183 1.6e-200 703.4 647 56.3
AL6G30550 Arabidopsis lyrata HOM05D005666 ORTHO05D007183 3.7e-200 702.2 643 55.5
Thhalv10012831m.g Eutrema salsugineum HOM05D005666 ORTHO05D007183 3.7e-200 702.2 645 55.3
AT5G19130 Arabidopsis thaliana HOM05D005666 ORTHO05D007183 1.1e-199 700.7 643 56.0
MBI16_g31718_MAGBIO Magnolia biondii HOM05D005666 ORTHO05D007183 1.1e-199 700.7 647 56.6
CSS0011984 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 1.5e-198 696.8 591 62.1
BolC9t58577H Brassica oleracea HOM05D005666 ORTHO05D007183 1.7e-197 693.3 643 56.0
Aa31LG11G15280 Aethionema arabicum HOM05D005666 ORTHO05D007183 5.0e-197 691.8 643 54.9
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 6.5e-197 691.4 601 59.6
Sp6g25230 Schrenkiella parvula HOM05D005666 ORTHO05D007183 8.5e-197 691.0 643 55.4
Oeu048621.1 Olea europaea HOM05D005666 ORTHO05D007183 1.9e-196 689.9 601 59.6
BraA10t44118Z Brassica rapa HOM05D005666 ORTHO05D007183 5.5e-196 688.3 643 55.2
DCAR_027499 Daucus carota HOM05D005666 ORTHO05D007183 5.5e-196 688.3 622 56.3
C09p57110 Brassica napus HOM05D005666 ORTHO05D007183 7.2e-196 688.0 643 55.7
PSO017G6377 Papaver somniferum HOM05D005666 ORTHO05D007183 9.3e-196 687.6 652 54.4
A10p20490 Brassica napus HOM05D005666 ORTHO05D007183 1.2e-195 687.2 643 55.4
Carub.0006s1746 Capsella rubella HOM05D005666 ORTHO05D007183 1.2e-195 687.2 643 54.6
BcaC04g18594 Brassica carinata HOM05D005666 ORTHO05D007183 4.6e-195 685.3 643 55.7
PSO478G0823 Papaver somniferum HOM05D005666 ORTHO05D007183 8.7e-194 681.0 652 54.3
Lsat_1_v5_gn_0_47721 Lactuca sativa HOM05D005666 ORTHO05D007183 1.1e-193 680.6 646 56.0
BcaB08g36600 Brassica carinata HOM05D005666 ORTHO05D007183 2.5e-193 679.5 643 54.7
HanXRQChr15g0475291 Helianthus annuus HOM05D005666 ORTHO05D007183 1.3e-192 677.2 645 55.5
HanXRQChr17g0548481 Helianthus annuus HOM05D005666 ORTHO05D007183 2.2e-192 676.4 644 55.3
Nitab4.5_0002529g0030 Nicotiana tabacum HOM05D005666 ORTHO05D007183 9.1e-191 671.0 633 56.4
Solyc02g067820.4 Solanum lycopersicum HOM05D005666 ORTHO05D007183 6.7e-186 654.8 640 55.9
EL10Ac1g01578 Beta vulgaris HOM05D005666 ORTHO05D007183 1.5e-185 653.7 670 52.1
FAN05G2905 Fragaria x ananassa HOM05D005666 ORTHO05D007183 9.7e-185 651.0 572 59.1
Peaxi162Scf00080g00117 Petunia axillaris HOM05D005666 ORTHO05D007183 4.7e-179 632.1 628 53.3
DCAR_011253 Daucus carota HOM05D005666 ORTHO05D007183 2.3e-178 629.8 697 49.1
unitig_747.g21863 Utricularia gibba HOM05D005666 ORTHO05D007183 2.4e-175 619.8 571 56.2
THA.LOC104824726 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 2.9e-173 612.8 642 52.2
ATR0686G164 Amborella trichopoda HOM05D005666 ORTHO05D007183 6.1e-171 605.1 616 52.4
CDE05G2460 Ceratophyllum demersum HOM05D005666 ORTHO05D007183 3.0e-170 602.8 651 49.0
Zm00001eb156580 Zea mays HOM05D005666 ORTHO05D007183 2.0e-166 590.1 656 48.6
HPP92_013793 Vanilla planifolia HOM05D005666 ORTHO05D007183 1.9e-156 557.0 641 47.7
Eucgr.J02243 Eucalyptus grandis HOM05D005666 ORTHO05D007183 2.0e-150 537.0 459 59.5
CARHR193820 Cardamine hirsuta HOM05D005666 ORTHO05D007183 8.0e-147 525.0 497 54.9
vmacro06910 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 2.3e-146 523.5 533 55.5
Actinidia16943 Actinidia chinensis HOM05D005666 ORTHO05D007183 1.1e-127 461.5 574 47.6
CSS0008870 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 2.4e-127 460.3 359 65.7
BcaB05g23370 Brassica carinata HOM05D005666 ORTHO05D007183 3.5e-126 456.4 646 43.7
AUR62040590 Chenopodium quinoa HOM05D005666 ORTHO05D007183 1.5e-108 397.9 360 56.9
Mapoly0008s0195 Marchantia polymorpha HOM05D005666 ORTHO05D007183 4.0e-98 363.2 656 36.6
AagrBONN_evm.TU.Sc2ySwM_344.4982 Anthoceros agrestis HOM05D005666 ORTHO05D007183 2.0e-97 360.9 699 34.3
SMO134G0274 Selaginella moellendorffii HOM05D005666 ORTHO05D007183 4.2e-87 326.6 646 34.4
ATR0762G005 Amborella trichopoda HOM05D005666 ORTHO05D007183 5.1e-85 319.7 339 50.7
SEGI_39396 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 1.8e-82 311.2 326 50.6
THA.LOC109116951 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 1.1e-79 302.0 297 56.9
Pp3c22_6140 Physcomitrium patens HOM05D005666 ORTHO05D007183 1.2e-73 282.0 431 39.2
TPR.G20372 Trifolium pratense HOM05D005666 ORTHO05D007183 8.8e-69 265.8 166 79.5
SHI16418 Sapria himalayana HOM05D005666 ORTHO05D007183 3.7e-67 260.4 280 51.4
ATR0919G001 Amborella trichopoda HOM05D005666 ORTHO05D007183 7.2e-63 246.1 247 53.4
Os01g0682200 Oryza sativa ssp. japonica HOM05D005666 ORTHO05D007183 8.8e-53 212.6 252 45.6
SHI16416 Sapria himalayana HOM05D005666 ORTHO05D007183 5.9e-49 199.9 273 44.0
CBR_g49194 Chara braunii HOM05D005666 ORTHO05D007183 5.7e-36 156.8 314 32.8
Oeu030978.1 Olea europaea HOM05D005666 ORTHO05D007183 1.5e-28 132.1 129 54.3
A02p05250 Brassica napus HOM05D005666 ORTHO05D007183 3.9e-24 117.5 296 29.1
MCO10G117 Micromonas commoda HOM05D005666 ORTHO05D007183 3.6e-22 110.9 362 28.2
CiPaw.04G028500 Carya illinoinensis HOM05D005666 ORTHO05D007183 4.9e-19 100.5 64 76.6
BolC2t06938H Brassica oleracea HOM05D005666 ORTHO05D043081 9.9e-12 76.3 68 58.8
Thecc.05G064500 Theobroma cacao HOM05D005666 ORTHO05D007183 1.4e-10 72.4 87 40.2
THA.LOC104820325 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 6.0e-09 67.0 96 38.5


User provided reference genes

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