Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 4.1e-121 438.3 265 100.0
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 1.6e-64 250.4 204 67.6
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 2.5e-62 243.0 202 66.8
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.2e-56 224.2 232 65.9
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 5.1e-55 218.8 218 67.4
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 1.6e-48 197.2 201 61.2
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 2.1e-48 196.8 201 59.2
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 6.0e-48 195.3 203 64.5
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 7.8e-48 194.9 213 68.1
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 1.3e-47 194.1 206 54.9
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 3.0e-47 193.0 202 67.3
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 3.9e-47 192.6 202 66.3
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 6.6e-47 191.8 199 61.3
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 1.5e-46 190.7 214 58.4
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.3e-46 189.5 202 61.4
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 3.3e-46 189.5 200 67.5
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 5.6e-46 188.7 207 70.0
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 1.3e-45 187.6 202 71.3
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.6e-45 187.2 201 60.7
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 1.6e-45 187.2 251 60.6
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 2.1e-45 186.8 198 68.2
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 2.1e-45 186.8 198 68.2
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 4.8e-45 185.7 202 62.9
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 6.2e-45 185.3 213 63.8
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.8e-44 183.7 202 51.0
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 5.3e-44 182.2 210 63.3
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 5.3e-44 182.2 202 51.5
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 5.3e-44 182.2 210 66.2
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 9.0e-44 181.4 202 59.4
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 9.0e-44 181.4 210 55.7
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 1.2e-43 181.0 257 55.3
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 1.5e-43 180.6 204 63.7
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.5e-43 180.6 212 62.7
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 1.5e-43 180.6 205 63.4
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.0e-43 180.3 213 62.0
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 2.6e-43 179.9 204 54.9
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 3.4e-43 179.5 214 66.4
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 3.4e-43 179.5 210 60.5
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 4.5e-43 179.1 200 57.5
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 5.8e-43 178.7 218 61.0
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 5.8e-43 178.7 229 53.3
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 7.6e-43 178.3 218 61.5
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.7e-42 177.2 201 59.7
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.9e-42 176.4 202 56.9
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 2.9e-42 176.4 202 61.4
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 8.4e-42 174.9 201 61.7
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 1.1e-41 174.5 208 61.1
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 1.4e-41 174.1 202 58.4
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 2.4e-41 173.3 209 49.3
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 3.2e-41 172.9 208 51.0
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 3.2e-41 172.9 216 59.7
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 3.2e-41 172.9 195 55.9
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 9.3e-41 171.4 205 61.5
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 9.3e-41 171.4 224 49.6
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 1.0e-39 167.9 220 57.7
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 1.3e-39 167.5 208 62.5
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 5.1e-39 165.6 210 59.5
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 6.7e-39 165.2 195 52.3
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 8.7e-39 164.9 206 51.5
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.5e-38 164.1 198 57.6
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.5e-38 164.1 195 58.5
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 1.9e-38 163.7 207 65.2
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 4.3e-38 162.5 200 63.0
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 5.6e-38 162.2 221 53.4
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 7.4e-38 161.8 217 48.4
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 9.6e-38 161.4 214 57.9
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 9.6e-38 161.4 211 58.8
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.3e-37 161.0 203 59.1
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 1.3e-37 161.0 218 45.0
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.3e-37 161.0 201 51.7
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 2.1e-37 160.2 209 58.4
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 2.1e-37 160.2 198 61.6
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.8e-37 159.8 244 54.5
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 4.8e-37 159.1 214 51.9
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 2.4e-36 156.8 201 59.2
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 4.0e-36 156.0 197 49.7
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 5.3e-36 155.6 205 64.4
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-35 154.5 211 56.4
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.2e-35 154.5 197 54.3
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.6e-35 153.3 233 42.5
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 2.6e-35 153.3 199 46.2
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 3.4e-35 152.9 213 55.9
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 4.5e-35 152.5 202 59.9
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 4.5e-35 152.5 201 57.7
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 7.6e-35 151.8 198 47.0
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 7.6e-35 151.8 200 45.5
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 7.6e-35 151.8 207 50.7
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-34 151.0 203 53.7
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 1.3e-34 151.0 244 43.9
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 4.9e-34 149.1 233 55.4
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 6.5e-34 148.7 218 53.7
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 6.5e-34 148.7 218 53.7
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 1.1e-33 147.9 203 55.7
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 1.9e-33 147.1 236 50.0
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 1.9e-33 147.1 202 58.4
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 2.5e-33 146.7 196 50.5
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 2.5e-33 146.7 213 40.4
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 3.2e-33 146.4 231 54.5
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 5.5e-33 145.6 195 55.4
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 5.5e-33 145.6 195 54.4
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 7.1e-33 145.2 195 54.9
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 1.6e-32 144.1 195 54.4
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 3.5e-32 142.9 205 51.7
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 4.6e-32 142.5 212 50.5
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 4.6e-32 142.5 224 50.9
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 7.9e-32 141.7 209 52.6
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 1.0e-31 141.4 212 50.9
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.0e-31 141.4 149 57.0
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 1.8e-31 140.6 208 50.0
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 1.8e-31 140.6 210 52.4
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.3e-31 140.2 141 70.9
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 5.1e-31 139.0 211 52.1
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 6.7e-31 138.7 204 51.0
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 8.7e-31 138.3 194 49.5
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 1.1e-30 137.9 212 48.6
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.5e-30 137.5 205 53.7
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 1.9e-30 137.1 216 46.3
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 2.5e-30 136.7 199 51.3
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 4.3e-30 136.0 237 50.2
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 4.3e-30 136.0 142 50.7
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 5.7e-30 135.6 190 49.5
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 5.7e-30 135.6 205 48.8
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 1.3e-29 134.4 231 49.8
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 2.8e-29 133.3 217 51.6
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 4.8e-29 132.5 191 39.8
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 4.8e-29 132.5 222 49.1
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 6.2e-29 132.1 225 48.0
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 6.2e-29 132.1 226 56.2
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-28 131.3 191 40.8
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 1.1e-28 131.3 191 40.8
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.1e-28 131.3 205 45.9
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 1.4e-28 131.0 206 52.4
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 2.4e-28 130.2 200 51.0
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 6.9e-28 128.6 199 42.7
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 9.0e-28 128.3 197 49.2
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 3.4e-27 126.3 206 48.5
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 3.4e-27 126.3 210 43.3
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 5.8e-27 125.6 200 40.5
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 1.0e-26 124.8 202 43.1
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 1.3e-26 124.4 227 43.2
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 2.2e-26 123.6 199 42.7
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 2.9e-26 123.2 153 45.8
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 5.0e-26 122.5 217 41.9
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 6.5e-26 122.1 197 46.2
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 1.1e-25 121.3 197 43.1
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.9e-25 120.6 200 40.0
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 4.2e-25 119.4 199 41.7
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 7.1e-25 118.6 199 41.7
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.2e-24 117.9 191 44.0
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 2.7e-24 116.7 190 38.4
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 2.7e-24 116.7 190 38.4
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 2.7e-24 116.7 190 38.4
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 1.8e-23 114.0 208 39.4
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 3.9e-23 112.8 153 53.6
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 3.9e-23 112.8 153 53.6
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 8.7e-23 111.7 153 54.2
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 8.7e-23 111.7 153 54.2
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.4e-20 104.4 227 37.9
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 9.0e-20 101.7 189 35.4
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 1.0e-18 98.2 117 60.7
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 7.2e-17 92.0 144 49.3
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.2e-16 91.3 154 47.4
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.4e-15 87.8 194 45.9
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.3e-15 87.0 194 45.4
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.3e-15 87.0 164 48.2
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 3.9e-15 86.3 194 45.9
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.9e-15 86.3 123 39.8
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 6.3e-13 79.0 174 36.2
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 6.9e-12 75.5 153 43.1
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 6.9e-12 75.5 152 30.3
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 2.0e-11 73.9 142 30.3
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 7.7e-11 72.0 110 49.1
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 4.2e-09 66.2 35 77.1
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 5.5e-09 65.9 124 30.6
Lalb_Chr22g0349911 Lupinus albus HOM05D003968 ORTHO05D004077 2.7e-08 63.5 82 62.2
Atru.chr1.737 Acer truncatum HOM05D003968 ORTHO05D004077 3.6e-08 63.2 31 83.9
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 6.1e-08 62.4 136 31.6
Ca_06512_v3 Cicer arietinum L. HOM05D003968 ORTHO05D004077 1.8e-07 60.8 95 52.6
SEGI_34313 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 2.6e-06 57.0 123 29.3
MBI01_g34424_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 5.7e-06 55.8 194 25.3
CDE12G0589 Ceratophyllum demersum HOM05D001667 ORTHO05D001508 7.4e-06 55.5 129 28.7
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 9.7e-06 55.1 127 27.6


User provided reference genes

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