Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G299600 Glycine max HOM05D002976 ORTHO05D003217 8.2e-91 337.0 169 100.0
Glyma.08G362200 Glycine max HOM05D002976 ORTHO05D003217 3.8e-72 275.0 145 93.8
Thecc.04G182400 Theobroma cacao HOM05D002976 ORTHO05D003217 2.2e-64 249.2 165 75.8
Phvul.008G003000 Phaseolus vulgaris HOM05D002976 ORTHO05D003217 1.2e-62 243.4 187 69.0
VMungo1383G2368 Vigna mungo HOM05D002976 ORTHO05D003217 1.8e-61 239.6 187 67.9
Ca_25795_v3 Cicer arietinum L. HOM05D002976 ORTHO05D003217 5.7e-60 234.6 186 68.3
TPR.G15625 Trifolium pratense HOM05D002976 ORTHO05D003217 9.7e-60 233.8 186 67.2
arahy.Tifrunner.gnm1.ann1.2984HV Arachis hypogaea HOM05D002976 ORTHO05D003217 2.2e-59 232.6 183 68.3
arahy.Tifrunner.gnm1.ann1.CAZS7V Arachis hypogaea HOM05D002976 ORTHO05D003217 2.2e-59 232.6 183 68.3
QL10p046359 Quercus lobata HOM05D002976 ORTHO05D003217 2.2e-59 232.6 185 65.9
Psat3g207360 Pisum sativum HOM05D002976 ORTHO05D003217 1.1e-58 230.3 186 67.2
Haze_00704 Corylus avellana HOM05D002976 ORTHO05D003217 3.1e-58 228.8 186 66.1
Medtr7g006260 Medicago truncatula HOM05D002976 ORTHO05D003217 3.1e-58 228.8 186 65.6
Gohir.A09G210300 Gossypium hirsutum HOM05D002976 ORTHO05D003217 1.2e-57 226.9 205 59.5
Prupe.1G182700 Prunus persica HOM05D002976 ORTHO05D003217 1.6e-57 226.5 145 75.9
Sabra02G0176200 Salix brachista HOM05D002976 ORTHO05D003217 2.6e-57 225.7 186 65.1
Gohir.D09G203700 Gossypium hirsutum HOM05D002976 ORTHO05D003217 4.5e-57 224.9 205 59.5
Gorai.006G227600 Gossypium raimondii HOM05D002976 ORTHO05D003217 4.5e-57 224.9 205 59.5
Potri.002G231000 Populus trichocarpa HOM05D002976 ORTHO05D003217 4.5e-57 224.9 186 64.5
PSO017G3444 Papaver somniferum HOM05D002976 ORTHO05D003217 7.7e-57 224.2 145 73.8
TAR633G1340 Trochodendron aralioides HOM05D002976 ORTHO05D003217 7.7e-57 224.2 185 64.3
Duzib151G0937 Durio zibethinus HOM05D002976 ORTHO05D003217 1.0e-56 223.8 206 59.7
Cfa015789 Carpinus fangiana HOM05D002976 ORTHO05D003217 5.0e-56 221.5 186 64.5
Actinidia35899 Actinidia chinensis HOM05D002976 ORTHO05D003217 8.5e-56 220.7 185 62.7
Dinv44222 Davidia involucrata HOM05D002976 ORTHO05D003217 1.5e-55 219.9 194 61.9
COL.COLO4_24361 Corchorus olitorius HOM05D002976 ORTHO05D003217 2.5e-55 219.2 205 59.0
Lj6A64G34 Lonicera japonica HOM05D002976 ORTHO05D003217 3.2e-55 218.8 199 60.3
Eucgr.H00431 Eucalyptus grandis HOM05D002976 ORTHO05D003217 5.5e-55 218.0 203 58.1
CiPaw.01G105100 Carya illinoinensis HOM05D002976 ORTHO05D003217 2.1e-54 216.1 186 61.8
Atru.chr3.1642 Acer truncatum HOM05D002976 ORTHO05D003217 2.7e-54 215.7 204 57.8
MD04G1031000 Malus domestica HOM05D002976 ORTHO05D003217 2.7e-54 215.7 206 56.3
Ciclev10019835m.g Citrus clementina HOM05D002976 ORTHO05D003217 1.8e-53 213.0 186 61.8
GSVIVG01013539001 Vitis vinifera HOM05D002976 ORTHO05D003217 1.8e-53 213.0 204 57.8
PGR142G4264 Punica granatum HOM05D002976 ORTHO05D003217 3.0e-53 212.2 186 61.3
CSS0013968 Camellia sinensis var. sinensis HOM05D002976 ORTHO05D003217 4.0e-53 211.8 198 57.6
CSS0017794 Camellia sinensis var. sinensis HOM05D002976 ORTHO05D003217 4.0e-53 211.8 198 57.6
Thhalv10001429m.g Eutrema salsugineum HOM05D002976 ORTHO05D003217 5.2e-53 211.5 176 61.4
Hma1.2p1_1187F.1_g265160 Hydrangea macrophylla HOM05D002976 ORTHO05D003217 5.2e-53 211.5 186 61.3
Lsat_1_v5_gn_6_56581 Lactuca sativa HOM05D002976 ORTHO05D003217 1.5e-52 209.9 207 57.0
TWI38G0628 Tripterygium wilfordii HOM05D002976 ORTHO05D003217 3.3e-52 208.8 186 59.1
CANSAT78G1494 Cannabis sativa HOM05D002976 ORTHO05D003217 5.7e-52 208.0 190 58.4
RcHm_v2.0_Chr4g0408741 Rosa chinensis HOM05D002976 ORTHO05D003217 5.7e-52 208.0 205 55.1
HanXRQChr07g0186741 Helianthus annuus HOM05D002976 ORTHO05D003217 1.3e-51 206.8 206 55.8
BolC3t15230H Brassica oleracea HOM05D002976 ORTHO05D003217 1.7e-51 206.5 178 60.7
Lalb_Chr04g0257271 Lupinus albus HOM05D002976 ORTHO05D003217 1.7e-51 206.5 181 60.2
FAN17G1305 Fragaria x ananassa HOM05D002976 ORTHO05D003217 2.2e-51 206.1 203 54.7
AL4G41840 Arabidopsis lyrata HOM05D002976 ORTHO05D003217 2.8e-51 205.7 175 61.1
AT2G43180 Arabidopsis thaliana HOM05D002976 ORTHO05D003217 2.8e-51 205.7 175 60.6
Rhsim09G0033400 Rhododendron simsii HOM05D002976 ORTHO05D003217 2.8e-51 205.7 186 61.3
Carub.0004s2565 Capsella rubella HOM05D002976 ORTHO05D003217 3.7e-51 205.3 174 59.2
FvH4_4g11620 Fragaria vesca HOM05D002976 ORTHO05D003217 3.7e-51 205.3 203 53.7
PSO675G2488 Papaver somniferum HOM05D002976 ORTHO05D003217 3.7e-51 205.3 184 58.2
A03p24090 Brassica napus HOM05D002976 ORTHO05D003217 6.3e-51 204.5 178 60.1
BraA03t11619Z Brassica rapa HOM05D002976 ORTHO05D003217 6.3e-51 204.5 178 60.1
MBI11_g02541_MAGBIO Magnolia biondii HOM05D002976 ORTHO05D003217 1.8e-50 203.0 218 50.9
DCAR_023911 Daucus carota HOM05D002976 ORTHO05D003217 2.4e-50 202.6 179 62.0
FAN22G1163 Fragaria x ananassa HOM05D002976 ORTHO05D003217 4.1e-50 201.8 203 53.7
Aa31LG1G24980 Aethionema arabicum HOM05D002976 ORTHO05D003217 7.0e-50 201.1 177 58.2
CARHR138240 Cardamine hirsuta HOM05D002976 ORTHO05D003217 7.0e-50 201.1 197 53.3
Nn1g09744 Nelumbo nucifera HOM05D002976 ORTHO05D003217 7.0e-50 201.1 190 58.4
ClCG07G016570 Citrullus lanatus HOM05D002976 ORTHO05D003217 1.2e-49 200.3 184 56.5
MELO3C017685.2 Cucumis melo HOM05D002976 ORTHO05D003217 1.2e-49 200.3 185 56.2
CsaV3_4G003700 Cucumis sativus L. HOM05D002976 ORTHO05D003217 1.6e-49 199.9 184 57.1
Sp4g25300 Schrenkiella parvula HOM05D002976 ORTHO05D003217 2.0e-49 199.5 176 58.5
unitig_736.g22470 Utricularia gibba HOM05D002976 ORTHO05D003217 2.7e-49 199.1 197 55.8
BcaB01g03406 Brassica carinata HOM05D002976 ORTHO05D003217 5.9e-49 198.0 197 54.8
Migut.N00790 Erythranthe guttata HOM05D002976 ORTHO05D003217 5.9e-49 198.0 197 56.9
Peaxi162Scf00353g00744 Petunia axillaris HOM05D002976 ORTHO05D003217 1.3e-48 196.8 209 54.1
Sed0018165 Sechium edule HOM05D002976 ORTHO05D003217 1.7e-48 196.4 205 51.2
ECA233G0527 Erigeron canadensis HOM05D002976 ORTHO05D000419 2.2e-48 196.1 167 61.7
vmacro00578 Vaccinium macrocarpon HOM05D002976 ORTHO05D003217 1.5e-47 193.4 216 50.9
Aqoxy2G04084 Aquilegia oxysepala HOM05D002976 ORTHO05D003217 1.9e-47 193.0 208 54.8
BcaC01g05252 Brassica carinata HOM05D002976 ORTHO05D003217 3.2e-47 192.2 204 52.9
PGSC0003DMG400023455 Solanum tuberosum HOM05D002976 ORTHO05D003217 3.2e-47 192.2 209 53.1
vmacro00581 Vaccinium macrocarpon HOM05D002976 ORTHO05D003217 3.2e-47 192.2 190 55.3
C03p28680 Brassica napus HOM05D002976 ORTHO05D003217 5.5e-47 191.4 205 52.7
Solyc05g056270.3 Solanum lycopersicum HOM05D002976 ORTHO05D003217 5.5e-47 191.4 209 52.6
Sc07g0007200 Simmondsia chinensis HOM05D002976 ORTHO05D003217 1.6e-46 189.9 168 60.7
Sopen05g034660 Solanum pennellii HOM05D002976 ORTHO05D003217 2.7e-46 189.1 209 52.2
arahy.Tifrunner.gnm1.ann1.8DC0EJ Arachis hypogaea HOM05D002976 ORTHO05D003217 3.6e-46 188.7 140 67.9
arahy.Tifrunner.gnm1.ann1.FXEC3Q Arachis hypogaea HOM05D002976 ORTHO05D003217 3.6e-46 188.7 140 67.9
THA.LOC104803535 Tarenaya hassleriana HOM05D002976 ORTHO05D003217 1.0e-45 187.2 181 53.6
CAN.G1921.5 Capsicum annuum HOM05D002976 ORTHO05D003217 1.8e-45 186.4 189 54.0
Sed0020117 Sechium edule HOM05D002976 ORTHO05D003217 1.5e-44 183.3 162 63.0
ATR0743G051 Amborella trichopoda HOM05D002976 ORTHO05D003217 1.4e-42 176.8 185 53.0
EL10Ac5g11603 Beta vulgaris HOM05D002976 ORTHO05D003217 1.2e-41 173.7 206 50.0
MSTRG.9768 Avicennia marina HOM05D002976 ORTHO05D003217 3.5e-41 172.2 198 48.0
Os04g0504600 Oryza sativa ssp. japonica HOM05D002976 ORTHO05D003217 1.1e-39 167.2 188 47.9
Zm00001eb426990 Zea mays HOM05D002976 ORTHO05D003217 1.5e-39 166.8 205 47.3
HPP92_012786 Vanilla planifolia HOM05D002976 ORTHO05D003217 1.9e-39 166.4 192 49.5
SEGI_19355 Sequoiadendron giganteum HOM05D002976 ORTHO05D003217 1.2e-38 163.7 226 42.0
Nitab4.5_0000582g0050 Nicotiana tabacum HOM05D002976 ORTHO05D003217 6.1e-38 161.4 186 53.8
Lj1g0006433 Lotus japonicus HOM05D002976 ORTHO05D003217 2.3e-37 159.5 160 55.6
FAN12G2375 Fragaria x ananassa HOM05D002976 ORTHO05D003217 8.9e-37 157.5 264 37.1
Nitab4.5_0004719g0060 Nicotiana tabacum HOM05D002976 ORTHO05D003217 2.2e-35 152.9 209 48.8
FAN12G2231 Fragaria x ananassa HOM05D002976 ORTHO05D003217 8.3e-35 151.0 259 36.3
SMO347G0492 Selaginella moellendorffii HOM05D002976 ORTHO05D003217 1.6e-33 146.7 202 41.1
Cpa.g.sc71.49 Carica papaya HOM05D002976 ORTHO05D003217 6.6e-32 141.4 145 55.2
Cc03_g11220 Coffea canephora HOM05D002976 ORTHO05D003217 4.3e-31 138.7 144 54.9
Pp3c2_8330 Physcomitrium patens HOM05D002976 ORTHO05D003217 3.6e-30 135.6 197 41.6
Os04g0386600 Oryza sativa ssp. japonica HOM05D002976 ORTHO05D003217 1.4e-26 123.6 153 45.8
AagrBONN_evm.TU.Sc2ySwM_117.2144 Anthoceros agrestis HOM05D002976 ORTHO05D003217 3.2e-26 122.5 227 34.4
AL7G19660 Arabidopsis lyrata HOM05D002976 ORTHO05D003217 1.4e-18 97.1 119 47.1
CBR_g48002 Chara braunii HOM05D002976 ORTHO05D003217 3.2e-18 95.9 233 28.3
Glyma.18G299700 Glycine max HOM05D002976 ORTHO05D003217 4.1e-18 95.5 56 76.8
Manes.11G114950 Manihot esculenta HOM05D002976 ORTHO05D003217 9.2e-18 94.4 54 79.6
RcHm_v2.0_Chr4g0408751 Rosa chinensis HOM05D002976 ORTHO05D003217 1.2e-17 94.0 83 59.0
Lj1g0012299 Lotus japonicus HOM05D002976 ORTHO05D003217 1.3e-16 90.5 65 67.7
Lj1g0003603 Lotus japonicus HOM05D002976 ORTHO05D003217 1.7e-16 90.1 65 67.7
TPR.G15615 Trifolium pratense HOM05D002333 ORTHO05D002485 1.1e-15 87.4 57 73.7
VMungo1383G0832 Vigna mungo HOM05D002976 ORTHO05D003217 1.5e-15 87.0 56 69.6
Phvul.008G002900 Phaseolus vulgaris HOM05D002976 ORTHO05D003217 4.3e-15 85.5 56 71.4
AUR62043293 Chenopodium quinoa HOM05D002976 ORTHO05D003217 1.2e-14 84.0 60 71.7
Psat3g207400 Pisum sativum HOM05D002976 ORTHO05D003217 4.7e-14 82.0 57 68.4
CANSAT78G1332 Cannabis sativa HOM05D002976 ORTHO05D003217 3.4e-12 75.9 59 61.0
Zm00001eb085500 Zea mays HOM05D002976 ORTHO05D003217 4.9e-11 72.0 57 59.6
CANSAT78G1318 Cannabis sativa HOM05D002976 ORTHO05D003217 8.3e-11 71.2 62 59.7
CANSAT78G0601 Cannabis sativa HOM05D002976 ORTHO05D003217 1.2e-09 67.4 55 58.2
RcHm_v2.0_Chr4g0408761 Rosa chinensis HOM05D002976 ORTHO05D003217 6.0e-09 65.1 43 72.1
CBR_g31672 Chara braunii HOM05D002976 ORTHO05D003217 1.3e-08 63.9 49 55.1
Cpa.g.c44811 Carica papaya HOM05D002976 ORTHO05D003217 1.7e-08 63.5 33 81.8
arahy.Tifrunner.gnm1.ann1.WY7NKY Arachis hypogaea HOM05D002976 ORTHO05D003217 3.0e-08 62.8 46 67.4
Cre03.g149250 Chlamydomonas reinhardtii HOM05D002976 ORTHO05D003217 5.6e-07 58.5 53 52.8
CANSAT78G0916 Cannabis sativa HOM05D002976 ORTHO05D003217 6.2e-06 55.1 57 52.6


User provided reference genes

Program Settings